Wall clock time and date at job start Sun Mar 29 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47472 * 2 1 4 4 H 1.08998 * 109.47250 * 55.00571 * 3 2 1 5 5 C 1.50703 * 109.47440 * 175.00912 * 3 2 1 6 6 H 1.07997 * 120.00055 * 120.00098 * 5 3 2 7 7 C 1.37876 * 119.99749 * 300.00119 * 5 3 2 8 8 N 1.31514 * 120.00123 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99943 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46798 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47383 * 119.99500 * 9 7 5 12 12 H 1.48500 * 109.46888 * 239.99889 * 9 7 5 13 13 N 1.46899 * 109.46950 * 295.00961 * 3 2 1 14 14 C 1.46904 * 111.00252 * 156.15997 * 13 3 2 15 15 H 1.09003 * 109.46726 * 34.68940 * 14 13 3 16 16 C 1.52997 * 109.46815 * 274.69639 * 14 13 3 17 17 C 1.50691 * 109.47410 * 154.69384 * 14 13 3 18 18 N 1.30280 * 126.28391 * 44.68578 * 17 14 13 19 19 N 1.28666 * 109.38102 * 179.82799 * 18 17 14 20 20 C 1.30279 * 109.38356 * 0.44499 * 19 18 17 21 21 C 1.50697 * 126.28529 * 179.73063 * 20 19 18 22 22 O 1.34363 * 107.43184 * 359.73099 * 20 19 18 23 23 H 1.09000 * 109.47368 * 175.42623 * 1 2 3 24 24 H 1.09000 * 109.47277 * 295.42729 * 1 2 3 25 25 H 1.09003 * 109.47069 * 55.41983 * 1 2 3 26 26 H 1.09004 * 109.46997 * 120.00055 * 2 1 3 27 27 H 1.08999 * 109.47620 * 239.99860 * 2 1 3 28 28 H 0.97001 * 120.00094 * 179.97438 * 8 7 5 29 29 H 1.00904 * 111.00151 * 280.10873 * 13 3 2 30 30 H 1.08997 * 109.47362 * 65.00130 * 16 14 13 31 31 H 1.09001 * 109.46957 * 185.00153 * 16 14 13 32 32 H 1.09006 * 109.47191 * 304.99857 * 16 14 13 33 33 H 1.09002 * 109.47149 * 270.00340 * 21 20 19 34 34 H 1.09000 * 109.46901 * 30.00352 * 21 20 19 35 35 H 1.09000 * 109.47033 * 150.00158 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1236 6 1 4.1471 1.8889 -0.6526 7 6 4.1434 0.8783 1.2276 8 7 3.4065 0.3373 2.1730 9 14 6.0051 0.8811 1.3812 10 1 6.5987 1.5462 0.1935 11 1 6.3994 1.6165 2.6096 12 1 6.4972 -0.5177 1.4623 13 7 1.6512 2.0993 -1.2551 14 6 1.5992 3.5583 -1.0917 15 1 2.3772 3.8740 -0.3966 16 6 0.2297 3.9613 -0.5415 17 6 1.8191 4.2215 -2.4269 18 7 1.2705 3.8786 -3.5577 19 7 1.6829 4.6656 -4.4883 20 6 2.5158 5.5316 -3.9847 21 6 3.2298 6.6244 -4.7376 22 8 2.6214 5.2713 -2.6707 23 1 -0.3634 -1.0244 -0.0819 24 1 -0.3634 0.4412 0.9281 25 1 -0.3633 0.5833 -0.8461 26 1 1.8932 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.8296 -0.0612 2.9496 29 1 2.2739 1.8416 -2.0061 30 1 0.1072 3.5542 0.4622 31 1 0.1588 5.0483 -0.5038 32 1 -0.5528 3.5685 -1.1909 33 1 4.1827 6.2472 -5.1088 34 1 2.6152 6.9483 -5.5775 35 1 3.4079 7.4683 -4.0710 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565548970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:41 Heat of formation + Delta-G solvation = 26.429300 kcal Electronic energy + Delta-G solvation = -17389.520627 eV Core-core repulsion = 14617.330997 eV Total energy + Delta-G solvation = -2772.189630 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.95456 -36.99472 -35.88607 -33.91589 -32.27678 -31.41136 -29.14547 -27.77900 -26.07867 -24.16431 -22.80821 -22.27555 -20.66919 -19.50404 -17.18947 -17.02510 -16.59711 -15.27928 -15.05508 -14.60714 -14.03835 -13.65191 -13.32139 -12.98930 -12.83226 -12.32884 -12.27433 -12.08248 -11.65932 -11.57791 -11.43947 -11.19342 -11.17342 -10.92987 -10.72516 -10.55857 -10.23675 -9.69274 -9.63409 -9.24519 -9.09280 -8.45710 -7.49562 -6.09004 -4.22797 1.38254 2.45548 2.65280 3.20469 3.29541 3.32504 4.02213 4.32364 4.60556 4.85524 5.13698 5.15658 5.25131 5.38180 5.49227 5.59385 5.69621 5.84057 5.94709 6.15127 6.30749 6.38079 6.51628 6.61643 6.70405 7.01944 7.18025 7.33131 7.49792 7.69317 7.93882 8.00575 8.16961 8.45959 8.60071 8.87439 9.45672 10.91165 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.007421 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.249549 B = 3772.124002 C = 4638.569925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C 0.214 3.786 4 H 0.040 0.960 5 C -0.553 4.553 6 H 0.052 0.948 7 C 0.071 3.929 8 N -0.881 5.881 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.666 5.666 14 C 0.184 3.816 15 H 0.079 0.921 16 C -0.131 4.131 17 C 0.178 3.822 18 N -0.272 5.272 19 N -0.293 5.293 20 C 0.141 3.859 21 C -0.053 4.053 22 O -0.228 6.228 23 H 0.025 0.975 24 H 0.036 0.964 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.336 0.664 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 9.862 -6.968 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C 0.107 3.893 4 H 0.058 0.942 5 C -0.592 4.592 6 H 0.071 0.929 7 C -0.132 4.132 8 N -0.519 5.519 9 Si 0.716 3.284 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.299 5.299 14 C 0.072 3.928 15 H 0.097 0.903 16 C -0.190 4.190 17 C -0.034 4.034 18 N -0.118 5.118 19 N -0.141 5.141 20 C -0.070 4.070 21 C -0.111 4.111 22 O -0.107 6.107 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.947 9.054 -7.533 12.141 hybrid contribution 2.868 0.757 1.006 3.132 sum -0.079 9.811 -6.527 11.784 Atomic orbital electron populations 1.21732 0.98744 0.98749 1.00545 1.21472 0.92361 0.98584 1.01885 1.19305 0.92967 0.91619 0.85454 0.94234 1.21875 0.92611 1.38913 1.05772 0.92935 1.24902 0.98016 0.94744 0.95573 1.69876 1.34832 1.37829 1.09354 0.86599 0.85917 0.77890 0.77967 1.19991 1.20916 1.20805 1.61177 1.57005 1.01285 1.10424 1.20013 0.99193 0.90052 0.83554 0.90302 1.21800 0.95313 0.99578 1.02296 1.28642 0.88692 0.85764 1.00253 1.74429 1.21478 1.19959 0.95969 1.74387 1.11032 1.03426 1.25252 1.27915 0.99186 1.00639 0.79298 1.20257 0.99936 0.92303 0.98622 1.84802 1.54745 1.43116 1.27996 0.95540 0.94467 0.92824 0.88935 0.94946 0.92760 0.84668 0.90519 0.93285 0.91227 0.88650 0.87901 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.85 37.15 0.37 -2.46 16 2 C -0.10 -2.44 5.45 -26.74 -0.15 -2.58 16 3 C 0.21 5.05 1.79 -68.86 -0.12 4.93 16 4 H 0.04 1.00 7.18 -51.93 -0.37 0.63 16 5 C -0.55 -14.42 8.21 -34.44 -0.28 -14.70 16 6 H 0.05 1.39 7.76 -52.49 -0.41 0.98 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -24.03 11.29 55.43 0.63 -23.40 16 9 Si 0.89 20.69 29.54 -169.99 -5.02 15.66 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -13.86 5.41 -102.17 -0.55 -14.41 16 14 C 0.18 3.43 2.97 -68.87 -0.20 3.23 16 15 H 0.08 1.57 7.59 -51.93 -0.39 1.17 16 16 C -0.13 -2.13 9.36 37.16 0.35 -1.78 16 17 C 0.18 3.27 6.97 -12.94 -0.09 3.18 16 18 N -0.27 -5.27 12.22 32.55 0.40 -4.87 16 19 N -0.29 -5.17 12.22 32.55 0.40 -4.77 16 20 C 0.14 2.07 8.48 -12.94 -0.11 1.96 16 21 C -0.05 -0.44 10.51 36.00 0.38 -0.07 16 22 O -0.23 -3.85 10.87 5.37 0.06 -3.79 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 1.05 7.63 -51.93 -0.40 0.66 16 26 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.34 7.31 8.06 -39.29 -0.32 6.99 16 30 H 0.08 1.25 7.50 -51.93 -0.39 0.86 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 296.89 15.07 4.47 4.47 Total: -1.00 -29.04 296.89 -4.68 -33.72 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.10 Total: 3.90 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 0.04 Total: -6.51 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.87 Total: -47.46 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: 0.06 Total: -3.79 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.04 -4.68 -33.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565548970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.148 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds