Wall clock time and date at job start Sun Mar 29 2020 22:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47472 * 2 1 4 4 H 1.08998 * 109.47250 * 55.00571 * 3 2 1 5 5 C 1.50703 * 109.47440 * 175.00912 * 3 2 1 6 6 H 1.07997 * 120.00055 * 120.00098 * 5 3 2 7 7 C 1.37876 * 119.99749 * 300.00119 * 5 3 2 8 8 N 1.31514 * 120.00123 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99943 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46798 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47383 * 119.99500 * 9 7 5 12 12 H 1.48500 * 109.46888 * 239.99889 * 9 7 5 13 13 N 1.46899 * 109.46950 * 295.00961 * 3 2 1 14 14 C 1.46904 * 111.00252 * 156.15997 * 13 3 2 15 15 H 1.09003 * 109.46726 * 34.68940 * 14 13 3 16 16 C 1.52997 * 109.46815 * 274.69639 * 14 13 3 17 17 C 1.50691 * 109.47410 * 154.69384 * 14 13 3 18 18 N 1.30280 * 126.28391 * 44.68578 * 17 14 13 19 19 N 1.28666 * 109.38102 * 179.82799 * 18 17 14 20 20 C 1.30279 * 109.38356 * 0.44499 * 19 18 17 21 21 C 1.50697 * 126.28529 * 179.73063 * 20 19 18 22 22 O 1.34363 * 107.43184 * 359.73099 * 20 19 18 23 23 H 1.09000 * 109.47368 * 175.42623 * 1 2 3 24 24 H 1.09000 * 109.47277 * 295.42729 * 1 2 3 25 25 H 1.09003 * 109.47069 * 55.41983 * 1 2 3 26 26 H 1.09004 * 109.46997 * 120.00055 * 2 1 3 27 27 H 1.08999 * 109.47620 * 239.99860 * 2 1 3 28 28 H 0.97001 * 120.00094 * 179.97438 * 8 7 5 29 29 H 1.00904 * 111.00151 * 280.10873 * 13 3 2 30 30 H 1.08997 * 109.47362 * 65.00130 * 16 14 13 31 31 H 1.09001 * 109.46957 * 185.00153 * 16 14 13 32 32 H 1.09006 * 109.47191 * 304.99857 * 16 14 13 33 33 H 1.09002 * 109.47149 * 270.00340 * 21 20 19 34 34 H 1.09000 * 109.46901 * 30.00352 * 21 20 19 35 35 H 1.09000 * 109.47033 * 150.00158 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1236 6 1 4.1471 1.8889 -0.6526 7 6 4.1434 0.8783 1.2276 8 7 3.4065 0.3373 2.1730 9 14 6.0051 0.8811 1.3812 10 1 6.5987 1.5462 0.1935 11 1 6.3994 1.6165 2.6096 12 1 6.4972 -0.5177 1.4623 13 7 1.6512 2.0993 -1.2551 14 6 1.5992 3.5583 -1.0917 15 1 2.3772 3.8740 -0.3966 16 6 0.2297 3.9613 -0.5415 17 6 1.8191 4.2215 -2.4269 18 7 1.2705 3.8786 -3.5577 19 7 1.6829 4.6656 -4.4883 20 6 2.5158 5.5316 -3.9847 21 6 3.2298 6.6244 -4.7376 22 8 2.6214 5.2713 -2.6707 23 1 -0.3634 -1.0244 -0.0819 24 1 -0.3634 0.4412 0.9281 25 1 -0.3633 0.5833 -0.8461 26 1 1.8932 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.8296 -0.0612 2.9496 29 1 2.2739 1.8416 -2.0061 30 1 0.1072 3.5542 0.4622 31 1 0.1588 5.0483 -0.5038 32 1 -0.5528 3.5685 -1.1909 33 1 4.1827 6.2472 -5.1088 34 1 2.6152 6.9483 -5.5775 35 1 3.4079 7.4683 -4.0710 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565548970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:40 Heat of formation + Delta-G solvation = 3.439251 kcal Electronic energy + Delta-G solvation = -17390.517551 eV Core-core repulsion = 14617.330997 eV Total energy + Delta-G solvation = -2773.186553 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.26534 -38.68081 -37.21756 -35.58858 -33.75532 -32.98236 -30.72223 -28.90248 -27.94651 -25.62634 -24.55184 -23.49942 -22.15439 -21.31937 -18.82523 -18.49885 -18.09510 -16.86749 -16.81136 -16.01269 -15.44739 -15.25688 -14.62711 -14.22687 -13.99079 -13.72561 -13.56978 -13.41907 -13.25843 -13.16354 -12.99878 -12.97750 -12.70638 -12.56008 -12.49747 -12.11122 -11.91770 -11.51088 -11.48672 -11.04728 -10.49554 -10.46867 -9.26392 -8.09666 -6.31129 0.11511 1.21577 1.32798 1.35212 1.39061 1.47607 2.37744 2.84894 3.11349 3.31060 3.57156 3.96657 4.12908 4.27982 4.38170 4.53652 4.56753 4.63366 4.73446 4.77022 4.80945 4.92353 4.97717 5.05341 5.16522 5.25616 5.46750 5.49438 5.61054 5.76035 6.04892 6.09254 6.27688 6.60243 6.89364 7.27261 7.40111 8.87771 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.007421 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.249549 B = 3772.124002 C = 4638.569925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 C 0.223 3.777 4 H 0.021 0.979 5 C -0.566 4.566 6 H 0.043 0.957 7 C 0.028 3.972 8 N -0.904 5.904 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.278 1.278 12 H -0.280 1.280 13 N -0.659 5.659 14 C 0.186 3.814 15 H 0.064 0.936 16 C -0.123 4.123 17 C 0.166 3.834 18 N -0.292 5.292 19 N -0.328 5.328 20 C 0.161 3.839 21 C -0.055 4.055 22 O -0.235 6.235 23 H 0.043 0.957 24 H 0.037 0.963 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.024 0.976 28 H 0.264 0.736 29 H 0.329 0.671 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.070 11.207 -7.780 13.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.140 4.140 3 C 0.115 3.885 4 H 0.039 0.961 5 C -0.605 4.605 6 H 0.061 0.939 7 C -0.173 4.173 8 N -0.542 5.542 9 Si 0.773 3.227 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.205 1.205 13 N -0.290 5.290 14 C 0.074 3.926 15 H 0.082 0.918 16 C -0.181 4.181 17 C -0.047 4.047 18 N -0.138 5.138 19 N -0.174 5.174 20 C -0.049 4.049 21 C -0.112 4.112 22 O -0.114 6.114 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.145 0.855 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.472 10.408 -8.365 13.579 hybrid contribution 2.755 0.429 1.178 3.027 sum 0.283 10.837 -7.187 13.007 Atomic orbital electron populations 1.21590 0.96165 1.00021 1.00749 1.21351 0.94637 0.97923 1.00110 1.19075 0.91621 0.91854 0.85962 0.96082 1.22123 0.93985 1.38772 1.05594 0.93854 1.25556 1.01776 0.94578 0.95416 1.69979 1.36240 1.38298 1.09697 0.85697 0.81383 0.77823 0.77841 1.20035 1.20362 1.20539 1.61115 1.56222 1.02868 1.08821 1.19966 1.00104 0.88667 0.83871 0.91805 1.21735 0.93633 1.01047 1.01688 1.28345 0.89730 0.86758 0.99836 1.74355 1.22157 1.20800 0.96488 1.74338 1.13092 1.04752 1.25263 1.29218 0.97175 1.00106 0.78444 1.20727 1.00423 0.91024 0.99010 1.84816 1.54584 1.42769 1.29277 0.93767 0.94387 0.92351 0.91566 0.95721 0.92649 0.85464 0.90907 0.91000 0.91368 0.86573 0.85790 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.85 71.98 0.71 -4.35 16 2 C -0.10 -4.79 5.45 30.59 0.17 -4.62 16 3 C 0.22 10.71 1.79 44.17 0.08 10.79 16 4 H 0.02 1.10 7.18 -2.39 -0.02 1.08 16 5 C -0.57 -29.94 8.21 25.60 0.21 -29.73 16 6 H 0.04 2.32 7.76 -2.91 -0.02 2.30 16 7 C 0.03 1.48 5.29 84.65 0.45 1.93 16 8 N -0.90 -49.79 11.29 21.45 0.24 -49.54 16 9 Si 0.95 42.53 29.54 68.60 2.03 44.56 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 13 N -0.66 -27.72 5.41 -477.16 -2.58 -30.30 16 14 C 0.19 6.96 2.97 44.16 0.13 7.09 16 15 H 0.06 2.58 7.59 -2.39 -0.02 2.56 16 16 C -0.12 -3.91 9.36 71.98 0.67 -3.24 16 17 C 0.17 6.05 6.97 88.34 0.62 6.66 16 18 N -0.29 -11.21 12.22 -165.50 -2.02 -13.23 16 19 N -0.33 -11.22 12.22 -165.50 -2.02 -13.24 16 20 C 0.16 4.43 8.48 88.34 0.75 5.17 16 21 C -0.05 -0.71 10.51 71.24 0.75 0.04 16 22 O -0.23 -7.67 10.87 -3.69 -0.04 -7.71 16 23 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 2.24 7.63 -2.39 -0.02 2.22 16 26 H 0.07 3.49 5.95 -2.38 -0.01 3.48 16 27 H 0.02 1.15 8.14 -2.39 -0.02 1.14 16 28 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.33 14.56 8.06 -89.69 -0.72 13.84 16 30 H 0.07 2.36 7.50 -2.39 -0.02 2.34 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -62.61 296.89 0.49 -62.11 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.36 Total: 17.61 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 4.53 Total: -10.25 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -6.39 Total: -106.32 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.04 Total: -7.71 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -62.61 0.49 -62.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565548970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.552 kcal (2) G-P(sol) polarization free energy of solvation -62.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds