Wall clock time and date at job start Sun Mar 29 2020 22:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 H 1.09003 * 109.47631 * 54.25762 * 3 2 1 5 5 C 1.50708 * 109.47080 * 174.25392 * 3 2 1 6 6 H 1.07997 * 119.99764 * 119.99692 * 5 3 2 7 7 C 1.37871 * 120.00184 * 300.00269 * 5 3 2 8 8 N 1.31519 * 119.99777 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00100 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47387 * 89.99945 * 9 7 5 11 11 H 1.48506 * 109.47198 * 209.99517 * 9 7 5 12 12 H 1.48499 * 109.47207 * 329.99869 * 9 7 5 13 13 N 1.46900 * 109.47319 * 294.25338 * 3 2 1 14 14 C 1.46897 * 111.00265 * 150.61827 * 13 3 2 15 15 H 1.09000 * 109.46927 * 327.33306 * 14 13 3 16 16 C 1.53006 * 109.46900 * 87.32811 * 14 13 3 17 17 C 1.50693 * 109.47488 * 207.33277 * 14 13 3 18 18 N 1.30280 * 126.27789 * 315.02216 * 17 14 13 19 19 N 1.28670 * 109.37890 * 179.97438 * 18 17 14 20 20 C 1.30281 * 109.38121 * 0.02562 * 19 18 17 21 21 C 1.50694 * 126.28028 * 179.97438 * 20 19 18 22 22 O 1.34360 * 126.28606 * 134.71606 * 17 14 13 23 23 H 1.09000 * 109.46998 * 296.54457 * 1 2 3 24 24 H 1.09005 * 109.47273 * 56.54192 * 1 2 3 25 25 H 1.08997 * 109.47181 * 176.54657 * 1 2 3 26 26 H 1.08994 * 109.47113 * 239.99961 * 2 1 3 27 27 H 1.08999 * 109.47322 * 119.99574 * 2 1 3 28 28 H 0.96995 * 119.99764 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99883 * 26.66442 * 13 3 2 30 30 H 1.08997 * 109.47323 * 300.00344 * 16 14 13 31 31 H 1.09000 * 109.46926 * 60.00495 * 16 14 13 32 32 H 1.09002 * 109.46856 * 179.97438 * 16 14 13 33 33 H 1.09010 * 109.46725 * 89.98325 * 21 20 19 34 34 H 1.09003 * 109.47339 * 209.97059 * 21 20 19 35 35 H 1.08997 * 109.47387 * 329.97912 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5951 1.9853 0.8341 5 6 3.5403 1.4450 0.1423 6 1 4.1550 1.8861 -0.6283 7 6 4.1281 0.8839 1.2561 8 7 3.3794 0.3469 2.1946 9 14 5.9877 0.8862 1.4320 10 1 6.4169 2.1222 2.1345 11 1 6.4123 -0.3014 2.2159 12 1 6.6124 0.8399 0.0856 13 7 1.6668 2.0939 -1.2627 14 6 1.4844 3.5394 -1.0757 15 1 1.0974 3.7303 -0.0748 16 6 2.8290 4.2493 -1.2465 17 6 0.5083 4.0593 -2.0993 18 7 0.4975 3.7717 -3.3699 19 7 -0.4743 4.3931 -3.9401 20 6 -1.1162 5.0986 -3.0527 21 6 -2.3173 5.9725 -3.3071 22 8 -0.5141 4.8998 -1.8681 23 1 -0.3633 0.4593 0.9193 24 1 -0.3634 0.5666 -0.8574 25 1 -0.3633 -1.0258 -0.0619 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.7929 -0.0475 2.9784 29 1 0.8383 1.6728 -1.6558 30 1 3.5351 3.8733 -0.5061 31 1 3.2161 4.0585 -2.2474 32 1 2.6936 5.3220 -1.1082 33 1 -3.2270 5.3848 -3.1826 34 1 -2.3204 6.8010 -2.5988 35 1 -2.2734 6.3634 -4.3236 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565548980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:42 Heat of formation + Delta-G solvation = 32.151998 kcal Electronic energy + Delta-G solvation = -17386.084027 eV Core-core repulsion = 14614.142551 eV Total energy + Delta-G solvation = -2771.941475 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.01529 -37.11834 -35.94736 -33.93145 -32.27556 -31.59191 -28.86019 -27.74690 -26.50353 -24.03762 -22.87990 -22.34202 -20.75245 -19.62027 -17.24560 -16.93964 -16.39606 -15.51723 -15.02891 -14.56174 -13.99716 -13.80112 -13.39517 -13.03014 -12.75959 -12.54335 -12.43554 -12.17192 -11.74858 -11.59622 -11.32197 -11.24291 -11.13157 -10.86047 -10.71074 -10.53299 -9.95377 -9.83063 -9.71229 -9.25140 -9.13787 -8.38578 -7.46466 -6.01371 -4.05166 1.31962 2.39108 2.60010 3.30833 3.38351 3.43311 3.96983 4.41024 4.55710 4.80440 5.08272 5.18459 5.28036 5.33685 5.47401 5.55520 5.75613 5.78696 5.90097 6.09172 6.11792 6.22560 6.34457 6.51132 6.76763 6.89701 6.97170 7.06104 7.34103 7.69750 7.86414 8.10804 8.29293 8.53547 8.59392 9.02277 9.59606 11.04282 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.035048 B = 0.006198 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.704890 B = 4516.865857 C = 4989.106643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.217 3.783 4 H 0.008 0.992 5 C -0.493 4.493 6 H 0.068 0.932 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.664 5.664 14 C 0.191 3.809 15 H 0.067 0.933 16 C -0.135 4.135 17 C 0.171 3.829 18 N -0.270 5.270 19 N -0.292 5.292 20 C 0.140 3.860 21 C -0.053 4.053 22 O -0.230 6.230 23 H 0.043 0.957 24 H 0.031 0.969 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.104 0.896 28 H 0.260 0.740 29 H 0.326 0.674 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 8.820 -5.153 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.026 0.974 5 C -0.532 4.532 6 H 0.086 0.914 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.299 5.299 14 C 0.079 3.921 15 H 0.085 0.915 16 C -0.193 4.193 17 C -0.040 4.040 18 N -0.116 5.116 19 N -0.140 5.140 20 C -0.071 4.071 21 C -0.111 4.111 22 O -0.109 6.109 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.103 8.261 -6.324 13.187 hybrid contribution -0.308 0.446 1.744 1.826 sum -8.411 8.707 -4.580 12.944 Atomic orbital electron populations 1.21898 0.99672 0.99725 0.99595 1.21818 0.91165 1.00150 1.03496 1.19375 0.96108 0.90189 0.83259 0.97397 1.21239 0.90846 1.36741 1.04350 0.91367 1.24963 0.98153 0.95493 0.95876 1.69866 1.34785 1.39393 1.09539 0.86541 0.85641 0.77365 0.78144 1.20858 1.21413 1.19770 1.60983 1.39253 0.98078 1.31577 1.20153 0.89893 0.91517 0.90487 0.91500 1.21911 0.95591 0.97132 1.04645 1.28860 0.88853 0.90328 0.95964 1.74457 1.13861 1.19110 1.04159 1.74410 1.03811 1.08303 1.27474 1.27940 0.99302 1.00783 0.79050 1.20262 0.89466 0.96802 1.04576 1.84795 1.36860 1.52896 1.36317 0.93774 0.94987 0.94140 0.93715 0.87822 0.93012 0.85447 0.88324 0.91606 0.93915 0.88667 0.89189 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.81 37.16 0.36 -2.56 16 2 C -0.13 -2.94 5.33 -26.73 -0.14 -3.08 16 3 C 0.22 5.17 2.03 -68.86 -0.14 5.03 16 4 H 0.01 0.22 7.32 -51.93 -0.38 -0.16 16 5 C -0.49 -12.83 7.44 -34.44 -0.26 -13.09 16 6 H 0.07 1.80 7.02 -52.49 -0.37 1.43 16 7 C 0.06 1.48 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -24.54 11.29 55.43 0.63 -23.91 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.66 -14.05 6.15 -102.17 -0.63 -14.68 16 14 C 0.19 3.62 3.17 -68.87 -0.22 3.40 16 15 H 0.07 1.26 7.34 -51.93 -0.38 0.88 16 16 C -0.13 -2.42 9.11 37.16 0.34 -2.08 16 17 C 0.17 3.11 6.95 -12.94 -0.09 3.02 16 18 N -0.27 -5.21 12.22 32.55 0.40 -4.81 16 19 N -0.29 -5.06 12.22 32.55 0.40 -4.66 16 20 C 0.14 1.98 8.48 -12.94 -0.11 1.87 16 21 C -0.05 -0.41 10.51 36.00 0.38 -0.03 16 22 O -0.23 -3.71 10.87 5.39 0.06 -3.65 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.03 0.58 6.41 -51.93 -0.33 0.24 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.10 2.66 5.94 -51.93 -0.31 2.35 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.33 6.72 6.05 -39.29 -0.24 6.48 16 30 H 0.10 1.94 6.22 -51.93 -0.32 1.62 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 291.46 15.07 4.39 4.39 Total: -1.00 -29.27 291.46 -4.59 -33.87 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.85 Total: 3.82 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 0.03 Total: -6.14 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.79 Total: -48.06 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: 0.06 Total: -3.65 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.27 -4.59 -33.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565548980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.017 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds