Wall clock time and date at job start Sun Mar 29 2020 22:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 H 1.09003 * 109.47631 * 54.25762 * 3 2 1 5 5 C 1.50708 * 109.47080 * 174.25392 * 3 2 1 6 6 H 1.07997 * 119.99764 * 119.99692 * 5 3 2 7 7 C 1.37871 * 120.00184 * 300.00269 * 5 3 2 8 8 N 1.31519 * 119.99777 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00100 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47387 * 89.99945 * 9 7 5 11 11 H 1.48506 * 109.47198 * 209.99517 * 9 7 5 12 12 H 1.48499 * 109.47207 * 329.99869 * 9 7 5 13 13 N 1.46900 * 109.47319 * 294.25338 * 3 2 1 14 14 C 1.46897 * 111.00265 * 150.61827 * 13 3 2 15 15 H 1.09000 * 109.46927 * 327.33306 * 14 13 3 16 16 C 1.53006 * 109.46900 * 87.32811 * 14 13 3 17 17 C 1.50693 * 109.47488 * 207.33277 * 14 13 3 18 18 N 1.30280 * 126.27789 * 315.02216 * 17 14 13 19 19 N 1.28670 * 109.37890 * 179.97438 * 18 17 14 20 20 C 1.30281 * 109.38121 * 0.02562 * 19 18 17 21 21 C 1.50694 * 126.28028 * 179.97438 * 20 19 18 22 22 O 1.34360 * 126.28606 * 134.71606 * 17 14 13 23 23 H 1.09000 * 109.46998 * 296.54457 * 1 2 3 24 24 H 1.09005 * 109.47273 * 56.54192 * 1 2 3 25 25 H 1.08997 * 109.47181 * 176.54657 * 1 2 3 26 26 H 1.08994 * 109.47113 * 239.99961 * 2 1 3 27 27 H 1.08999 * 109.47322 * 119.99574 * 2 1 3 28 28 H 0.96995 * 119.99764 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99883 * 26.66442 * 13 3 2 30 30 H 1.08997 * 109.47323 * 300.00344 * 16 14 13 31 31 H 1.09000 * 109.46926 * 60.00495 * 16 14 13 32 32 H 1.09002 * 109.46856 * 179.97438 * 16 14 13 33 33 H 1.09010 * 109.46725 * 89.98325 * 21 20 19 34 34 H 1.09003 * 109.47339 * 209.97059 * 21 20 19 35 35 H 1.08997 * 109.47387 * 329.97912 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5951 1.9853 0.8341 5 6 3.5403 1.4450 0.1423 6 1 4.1550 1.8861 -0.6283 7 6 4.1281 0.8839 1.2561 8 7 3.3794 0.3469 2.1946 9 14 5.9877 0.8862 1.4320 10 1 6.4169 2.1222 2.1345 11 1 6.4123 -0.3014 2.2159 12 1 6.6124 0.8399 0.0856 13 7 1.6668 2.0939 -1.2627 14 6 1.4844 3.5394 -1.0757 15 1 1.0974 3.7303 -0.0748 16 6 2.8290 4.2493 -1.2465 17 6 0.5083 4.0593 -2.0993 18 7 0.4975 3.7717 -3.3699 19 7 -0.4743 4.3931 -3.9401 20 6 -1.1162 5.0986 -3.0527 21 6 -2.3173 5.9725 -3.3071 22 8 -0.5141 4.8998 -1.8681 23 1 -0.3633 0.4593 0.9193 24 1 -0.3634 0.5666 -0.8574 25 1 -0.3633 -1.0258 -0.0619 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.7929 -0.0475 2.9784 29 1 0.8383 1.6728 -1.6558 30 1 3.5351 3.8733 -0.5061 31 1 3.2161 4.0585 -2.2474 32 1 2.6936 5.3220 -1.1082 33 1 -3.2270 5.3848 -3.1826 34 1 -2.3204 6.8010 -2.5988 35 1 -2.2734 6.3634 -4.3236 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565548980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:42 Heat of formation + Delta-G solvation = 8.544483 kcal Electronic energy + Delta-G solvation = -17387.107725 eV Core-core repulsion = 14614.142551 eV Total energy + Delta-G solvation = -2772.965174 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.28972 -38.81301 -37.23791 -35.56502 -33.81097 -33.07543 -30.40068 -28.96183 -28.31641 -25.48162 -24.66047 -23.51585 -22.22649 -21.44005 -18.51650 -18.40890 -18.21455 -17.04061 -16.75889 -15.94372 -15.53684 -15.35421 -14.51526 -14.28845 -14.19778 -13.91242 -13.62171 -13.48255 -13.30311 -13.06847 -12.96884 -12.87782 -12.69046 -12.59391 -12.42050 -11.96699 -11.85549 -11.59317 -11.54243 -11.04304 -10.52392 -10.39330 -9.22013 -8.03516 -6.13125 0.09016 1.17610 1.30671 1.45605 1.48411 1.58058 2.47975 2.82049 3.20742 3.29722 3.55270 3.91533 4.11614 4.26272 4.36642 4.46681 4.49211 4.50144 4.57653 4.65796 4.73931 4.78487 4.98806 5.05303 5.06389 5.13733 5.28681 5.40761 5.54207 5.77303 5.86920 6.29348 6.40412 6.75934 6.97809 7.25951 7.54580 9.00597 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.035048 B = 0.006198 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.704890 B = 4516.865857 C = 4989.106643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.225 3.775 4 H -0.015 1.015 5 C -0.503 4.503 6 H 0.060 0.940 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.667 5.667 14 C 0.193 3.807 15 H 0.066 0.934 16 C -0.126 4.126 17 C 0.162 3.838 18 N -0.293 5.293 19 N -0.329 5.329 20 C 0.164 3.836 21 C -0.055 4.055 22 O -0.232 6.232 23 H 0.041 0.959 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.260 0.740 29 H 0.329 0.671 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.241 10.078 -5.722 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C 0.117 3.883 4 H 0.003 0.997 5 C -0.541 4.541 6 H 0.078 0.922 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.301 5.301 14 C 0.082 3.918 15 H 0.084 0.916 16 C -0.185 4.185 17 C -0.051 4.051 18 N -0.139 5.139 19 N -0.176 5.176 20 C -0.046 4.046 21 C -0.112 4.112 22 O -0.111 6.111 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.258 9.531 -6.920 14.981 hybrid contribution -0.067 0.145 1.864 1.870 sum -9.324 9.675 -5.056 14.357 Atomic orbital electron populations 1.21761 0.96732 1.01268 0.99998 1.21660 0.93828 0.99125 1.01669 1.19150 0.94951 0.90630 0.83539 0.99745 1.21458 0.92117 1.36415 1.04138 0.92157 1.25609 1.01827 0.95355 0.95728 1.69984 1.36133 1.40049 1.09873 0.85643 0.81215 0.77365 0.77908 1.20220 1.21369 1.19729 1.60855 1.39674 0.99521 1.30094 1.20015 0.90782 0.90193 0.90857 0.91600 1.21803 0.94660 0.98632 1.03386 1.28372 0.89699 0.91595 0.95418 1.74388 1.14974 1.19880 1.04685 1.74364 1.04624 1.10174 1.28388 1.29250 0.98938 0.98848 0.77597 1.20743 0.87267 0.96769 1.06396 1.84809 1.36499 1.52591 1.37246 0.93941 0.93828 0.92119 0.94464 0.90565 0.93118 0.85167 0.90303 0.92379 0.91266 0.86268 0.86677 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.81 71.98 0.71 -4.59 16 2 C -0.12 -5.77 5.33 30.59 0.16 -5.60 16 3 C 0.22 10.87 2.03 44.17 0.09 10.96 16 4 H -0.01 -0.78 7.32 -2.39 -0.02 -0.80 16 5 C -0.50 -26.59 7.44 25.60 0.19 -26.40 16 6 H 0.06 3.23 7.02 -2.91 -0.02 3.21 16 7 C 0.01 0.70 5.29 84.65 0.45 1.14 16 8 N -0.92 -51.13 11.29 21.45 0.24 -50.89 16 9 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 13 N -0.67 -28.45 6.15 -477.15 -2.94 -31.39 16 14 C 0.19 7.30 3.17 44.17 0.14 7.44 16 15 H 0.07 2.50 7.34 -2.39 -0.02 2.49 16 16 C -0.13 -4.54 9.11 71.98 0.66 -3.89 16 17 C 0.16 5.74 6.95 88.34 0.61 6.36 16 18 N -0.29 -11.16 12.22 -165.50 -2.02 -13.18 16 19 N -0.33 -10.94 12.22 -165.50 -2.02 -12.97 16 20 C 0.16 4.23 8.48 88.34 0.75 4.98 16 21 C -0.05 -0.62 10.51 71.23 0.75 0.13 16 22 O -0.23 -7.07 10.87 -3.62 -0.04 -7.11 16 23 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.04 1.53 6.41 -2.38 -0.02 1.51 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.08 3.99 5.94 -2.39 -0.01 3.98 16 28 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.33 13.54 6.05 -89.69 -0.54 13.00 16 30 H 0.08 3.14 6.22 -2.39 -0.01 3.12 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -63.65 291.46 0.30 -63.34 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.55 Total: 16.64 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 4.50 Total: -9.47 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -6.74 Total: -108.42 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.04 Total: -7.11 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -63.65 0.30 -63.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565548980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.888 kcal (2) G-P(sol) polarization free energy of solvation -63.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds