Wall clock time and date at job start Sun Mar 29 2020 22:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47114 * 2 1 4 4 H 1.09003 * 109.47196 * 305.28589 * 3 2 1 5 5 C 1.50698 * 109.47102 * 185.28912 * 3 2 1 6 6 H 1.07999 * 119.99808 * 239.72759 * 5 3 2 7 7 C 1.37883 * 119.99839 * 59.99864 * 5 3 2 8 8 N 1.31512 * 119.99923 * 359.72641 * 7 5 3 9 9 Si 1.86804 * 119.99694 * 179.72547 * 7 5 3 10 10 H 1.48495 * 109.46878 * 90.00002 * 9 7 5 11 11 H 1.48498 * 109.46759 * 209.99790 * 9 7 5 12 12 H 1.48495 * 109.47013 * 330.00122 * 9 7 5 13 13 N 1.46898 * 109.47013 * 65.28872 * 3 2 1 14 14 C 1.46904 * 110.99732 * 205.81884 * 13 3 2 15 15 H 1.08998 * 109.47122 * 328.22573 * 14 13 3 16 16 C 1.53001 * 109.47184 * 88.22855 * 14 13 3 17 17 C 1.50707 * 109.46978 * 208.23037 * 14 13 3 18 18 N 1.30278 * 126.27928 * 315.02408 * 17 14 13 19 19 N 1.28664 * 109.37997 * 179.97438 * 18 17 14 20 20 C 1.30277 * 109.38113 * 0.02562 * 19 18 17 21 21 C 1.50699 * 126.28416 * 180.02562 * 20 19 18 22 22 O 1.34349 * 126.28196 * 134.71286 * 17 14 13 23 23 H 1.08992 * 109.47234 * 178.69346 * 1 2 3 24 24 H 1.08999 * 109.47572 * 298.69855 * 1 2 3 25 25 H 1.09004 * 109.47098 * 58.69648 * 1 2 3 26 26 H 1.08995 * 109.47022 * 239.99864 * 2 1 3 27 27 H 1.08996 * 109.46668 * 119.99519 * 2 1 3 28 28 H 0.97005 * 119.99867 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00404 * 329.76957 * 13 3 2 30 30 H 1.08997 * 109.46628 * 183.70365 * 16 14 13 31 31 H 1.08995 * 109.46827 * 303.70755 * 16 14 13 32 32 H 1.08999 * 109.46719 * 63.71157 * 16 14 13 33 33 H 1.09001 * 109.47108 * 89.96780 * 21 20 19 34 34 H 1.08998 * 109.47020 * 209.96923 * 21 20 19 35 35 H 1.08998 * 109.46810 * 329.96889 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9830 -0.8389 5 6 3.5413 1.4445 -0.1310 6 1 4.1500 1.8917 0.6409 7 6 4.1374 0.8804 -1.2390 8 7 3.3960 0.3359 -2.1788 9 14 5.9980 0.8898 -1.4049 10 1 6.5562 -0.3395 -0.7866 11 1 6.3664 0.9318 -2.8429 12 1 6.5503 2.0844 -0.7172 13 7 1.6573 2.0972 1.2582 14 6 1.5588 3.5527 1.0855 15 1 2.2779 3.8789 0.3342 16 6 0.1445 3.9177 0.6302 17 6 1.8567 4.2353 2.3957 18 7 1.3937 3.8950 3.5649 19 7 1.8566 4.6978 4.4575 20 6 2.6302 5.5778 3.8880 21 6 3.3697 6.6947 4.5784 22 8 2.6530 5.3027 2.5730 23 1 -0.3633 -1.0273 -0.0234 24 1 -0.3634 0.4935 0.9014 25 1 -0.3633 0.5340 -0.8781 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5137 0.8900 28 1 3.8154 -0.0607 -2.9585 29 1 0.7942 1.7163 1.6161 30 1 0.0897 4.9893 0.4387 31 1 -0.0953 3.3727 -0.2828 32 1 -0.5685 3.6511 1.4104 33 1 4.3553 6.3436 4.8839 34 1 3.4796 7.5355 3.8935 35 1 2.8089 7.0129 5.4573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565548981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:44 Heat of formation + Delta-G solvation = 28.628784 kcal Electronic energy + Delta-G solvation = -17389.956278 eV Core-core repulsion = 14617.862025 eV Total energy + Delta-G solvation = -2772.094253 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.81978 -37.19877 -35.76249 -33.93599 -32.27084 -31.49950 -28.91935 -27.67995 -26.20631 -24.22154 -22.86442 -22.18978 -20.83389 -19.68021 -17.10427 -16.77411 -16.26713 -15.20744 -15.12087 -14.49188 -14.00058 -13.93120 -13.31611 -12.93667 -12.92124 -12.65107 -12.39816 -11.98745 -11.84747 -11.74936 -11.44993 -11.25020 -11.12415 -10.91923 -10.66597 -10.46929 -10.03002 -9.89013 -9.70121 -9.26105 -9.02466 -8.41572 -7.46351 -6.03776 -4.08641 1.52021 2.56112 2.78128 3.29126 3.35743 3.39710 4.12763 4.39590 4.72595 4.95838 5.20928 5.23327 5.26521 5.34475 5.47843 5.50065 5.68669 5.78705 5.95076 6.08126 6.13411 6.14703 6.15392 6.38969 6.40378 6.80657 6.98760 7.06650 7.35804 7.71029 7.83438 8.09837 8.29456 8.60869 8.70807 8.98680 9.56929 11.01234 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.021969 B = 0.007526 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.188414 B = 3719.401254 C = 4623.414275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.222 3.778 4 H 0.010 0.990 5 C -0.500 4.500 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.672 5.672 14 C 0.182 3.818 15 H 0.113 0.887 16 C -0.173 4.173 17 C 0.201 3.799 18 N -0.285 5.285 19 N -0.293 5.293 20 C 0.136 3.864 21 C -0.052 4.052 22 O -0.228 6.228 23 H 0.039 0.961 24 H 0.037 0.963 25 H 0.043 0.957 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.261 0.739 29 H 0.333 0.667 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 9.683 6.151 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.115 3.885 4 H 0.027 0.973 5 C -0.538 4.538 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.306 5.306 14 C 0.068 3.932 15 H 0.131 0.869 16 C -0.232 4.232 17 C -0.011 4.011 18 N -0.131 5.131 19 N -0.141 5.141 20 C -0.075 4.075 21 C -0.110 4.110 22 O -0.107 6.107 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.121 0.879 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.153 0.847 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.228 8.950 7.119 11.883 hybrid contribution 0.929 0.587 -1.463 1.830 sum -2.299 9.537 5.656 11.324 Atomic orbital electron populations 1.21901 0.99405 0.99889 0.99744 1.21773 0.91403 0.99848 1.03394 1.19252 0.95580 0.90211 0.83428 0.97277 1.21201 0.91114 1.36934 1.04584 0.92181 1.24931 0.98187 0.95429 0.95716 1.69858 1.34786 1.38974 1.09703 0.86544 0.85676 0.78486 0.76989 1.20680 1.21307 1.20040 1.60351 1.37723 0.98850 1.33632 1.19810 0.97362 0.90505 0.85508 0.86918 1.22480 0.96078 1.02089 1.02559 1.28517 0.88387 0.84472 0.99696 1.74308 1.22275 1.19940 0.96531 1.74322 1.10809 1.02732 1.26216 1.27837 1.00283 1.00737 0.78635 1.20227 0.99456 0.91761 0.99547 1.84773 1.55183 1.42056 1.28641 0.94228 0.94422 0.93766 0.87936 0.93829 0.92941 0.84683 0.92322 0.90334 0.91809 0.88736 0.89314 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.73 37.16 0.36 -2.46 16 2 C -0.13 -2.86 5.36 -26.73 -0.14 -3.00 16 3 C 0.22 5.25 1.83 -68.86 -0.13 5.12 16 4 H 0.01 0.24 7.35 -51.93 -0.38 -0.14 16 5 C -0.50 -13.43 8.56 -34.44 -0.29 -13.72 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 8 N -0.89 -24.56 11.28 55.43 0.63 -23.94 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.67 -14.11 6.04 -102.16 -0.62 -14.73 16 14 C 0.18 3.38 2.92 -68.86 -0.20 3.18 16 15 H 0.11 2.23 7.64 -51.93 -0.40 1.84 16 16 C -0.17 -2.62 9.13 37.16 0.34 -2.28 16 17 C 0.20 3.82 7.32 -12.94 -0.09 3.73 16 18 N -0.28 -5.67 12.22 32.55 0.40 -5.27 16 19 N -0.29 -5.37 12.22 32.55 0.40 -4.97 16 20 C 0.14 2.10 8.48 -12.94 -0.11 1.99 16 21 C -0.05 -0.46 10.51 36.01 0.38 -0.09 16 22 O -0.23 -4.01 10.87 5.40 0.06 -3.95 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.64 6.48 -51.93 -0.34 0.30 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 29 H 0.33 6.55 6.20 -39.29 -0.24 6.30 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.19 7.66 -51.93 -0.40 0.79 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -30.19 295.14 -4.69 -34.87 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.99 Total: 3.41 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 0.02 Total: -6.05 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.80 Total: -48.91 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: 0.06 Total: -3.95 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.19 -4.69 -34.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565548981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.502 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds