Wall clock time and date at job start Sun Mar 29 2020 22:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47114 * 2 1 4 4 H 1.09003 * 109.47196 * 305.28589 * 3 2 1 5 5 C 1.50698 * 109.47102 * 185.28912 * 3 2 1 6 6 H 1.07999 * 119.99808 * 239.72759 * 5 3 2 7 7 C 1.37883 * 119.99839 * 59.99864 * 5 3 2 8 8 N 1.31512 * 119.99923 * 359.72641 * 7 5 3 9 9 Si 1.86804 * 119.99694 * 179.72547 * 7 5 3 10 10 H 1.48495 * 109.46878 * 90.00002 * 9 7 5 11 11 H 1.48498 * 109.46759 * 209.99790 * 9 7 5 12 12 H 1.48495 * 109.47013 * 330.00122 * 9 7 5 13 13 N 1.46898 * 109.47013 * 65.28872 * 3 2 1 14 14 C 1.46904 * 110.99732 * 205.81884 * 13 3 2 15 15 H 1.08998 * 109.47122 * 328.22573 * 14 13 3 16 16 C 1.53001 * 109.47184 * 88.22855 * 14 13 3 17 17 C 1.50707 * 109.46978 * 208.23037 * 14 13 3 18 18 N 1.30278 * 126.27928 * 315.02408 * 17 14 13 19 19 N 1.28664 * 109.37997 * 179.97438 * 18 17 14 20 20 C 1.30277 * 109.38113 * 0.02562 * 19 18 17 21 21 C 1.50699 * 126.28416 * 180.02562 * 20 19 18 22 22 O 1.34349 * 126.28196 * 134.71286 * 17 14 13 23 23 H 1.08992 * 109.47234 * 178.69346 * 1 2 3 24 24 H 1.08999 * 109.47572 * 298.69855 * 1 2 3 25 25 H 1.09004 * 109.47098 * 58.69648 * 1 2 3 26 26 H 1.08995 * 109.47022 * 239.99864 * 2 1 3 27 27 H 1.08996 * 109.46668 * 119.99519 * 2 1 3 28 28 H 0.97005 * 119.99867 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00404 * 329.76957 * 13 3 2 30 30 H 1.08997 * 109.46628 * 183.70365 * 16 14 13 31 31 H 1.08995 * 109.46827 * 303.70755 * 16 14 13 32 32 H 1.08999 * 109.46719 * 63.71157 * 16 14 13 33 33 H 1.09001 * 109.47108 * 89.96780 * 21 20 19 34 34 H 1.08998 * 109.47020 * 209.96923 * 21 20 19 35 35 H 1.08998 * 109.46810 * 329.96889 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9830 -0.8389 5 6 3.5413 1.4445 -0.1310 6 1 4.1500 1.8917 0.6409 7 6 4.1374 0.8804 -1.2390 8 7 3.3960 0.3359 -2.1788 9 14 5.9980 0.8898 -1.4049 10 1 6.5562 -0.3395 -0.7866 11 1 6.3664 0.9318 -2.8429 12 1 6.5503 2.0844 -0.7172 13 7 1.6573 2.0972 1.2582 14 6 1.5588 3.5527 1.0855 15 1 2.2779 3.8789 0.3342 16 6 0.1445 3.9177 0.6302 17 6 1.8567 4.2353 2.3957 18 7 1.3937 3.8950 3.5649 19 7 1.8566 4.6978 4.4575 20 6 2.6302 5.5778 3.8880 21 6 3.3697 6.6947 4.5784 22 8 2.6530 5.3027 2.5730 23 1 -0.3633 -1.0273 -0.0234 24 1 -0.3634 0.4935 0.9014 25 1 -0.3633 0.5340 -0.8781 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5137 0.8900 28 1 3.8154 -0.0607 -2.9585 29 1 0.7942 1.7163 1.6161 30 1 0.0897 4.9893 0.4387 31 1 -0.0953 3.3727 -0.2828 32 1 -0.5685 3.6511 1.4104 33 1 4.3553 6.3436 4.8839 34 1 3.4796 7.5355 3.8935 35 1 2.8089 7.0129 5.4573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565548981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:44 Heat of formation + Delta-G solvation = 4.248495 kcal Electronic energy + Delta-G solvation = -17391.013487 eV Core-core repulsion = 14617.862025 eV Total energy + Delta-G solvation = -2773.151462 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.17238 -38.85589 -37.13864 -35.60271 -33.82493 -33.00160 -30.44723 -28.83210 -28.08520 -25.64246 -24.63178 -23.44430 -22.28882 -21.49894 -18.46628 -18.37347 -18.07201 -16.88054 -16.67691 -16.02498 -15.51699 -15.39567 -14.55479 -14.37952 -14.16818 -13.72724 -13.62339 -13.47779 -13.36134 -13.14977 -13.01821 -12.84829 -12.76505 -12.57458 -12.50411 -12.00541 -11.87313 -11.62761 -11.48767 -11.11192 -10.44761 -10.40603 -9.18255 -8.08951 -6.20664 0.21154 1.28679 1.39420 1.41442 1.41603 1.50545 2.42217 2.94593 3.16410 3.45016 3.60929 3.89526 4.08226 4.23708 4.42221 4.48066 4.53848 4.58530 4.60070 4.69911 4.76196 4.80378 4.83768 5.04931 5.07921 5.15509 5.24345 5.36261 5.57278 5.72065 5.87158 6.28590 6.40357 6.85585 6.90203 7.34292 7.48034 8.93690 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.021969 B = 0.007526 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.188414 B = 3719.401254 C = 4623.414275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.231 3.769 4 H -0.007 1.007 5 C -0.518 4.518 6 H 0.041 0.959 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.949 3.051 10 H -0.279 1.279 11 H -0.279 1.279 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.183 3.817 15 H 0.094 0.906 16 C -0.161 4.161 17 C 0.187 3.813 18 N -0.305 5.305 19 N -0.328 5.328 20 C 0.155 3.845 21 C -0.053 4.053 22 O -0.237 6.237 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.341 0.659 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 10.932 6.808 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.124 3.876 4 H 0.011 0.989 5 C -0.557 4.557 6 H 0.059 0.941 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.205 1.205 12 H -0.201 1.201 13 N -0.314 5.314 14 C 0.070 3.930 15 H 0.113 0.887 16 C -0.220 4.220 17 C -0.026 4.026 18 N -0.150 5.150 19 N -0.175 5.175 20 C -0.056 4.056 21 C -0.110 4.110 22 O -0.116 6.116 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.186 10.206 7.801 13.235 hybrid contribution 0.965 0.285 -1.588 1.880 sum -2.221 10.491 6.213 12.393 Atomic orbital electron populations 1.21767 0.95971 1.01357 1.00711 1.21607 0.94483 0.98649 1.01285 1.18988 0.93850 0.90811 0.83981 0.98935 1.21414 0.92879 1.37063 1.04308 0.94077 1.25554 1.01843 0.95189 0.95518 1.69959 1.36072 1.39226 1.09924 0.85693 0.81318 0.78238 0.77171 1.20543 1.20466 1.20074 1.60172 1.38484 1.00426 1.32345 1.19772 0.98964 0.89003 0.85257 0.88748 1.22369 0.93734 1.03413 1.02500 1.28404 0.89328 0.85373 0.99507 1.74229 1.23033 1.20757 0.96983 1.74265 1.12847 1.04023 1.26370 1.29152 0.98294 1.00431 0.77745 1.20689 0.99719 0.90351 1.00281 1.84790 1.55096 1.41798 1.29935 0.92493 0.92663 0.93551 0.90827 0.95015 0.92848 0.83868 0.90289 0.90364 0.91107 0.86859 0.86751 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.73 71.98 0.70 -4.35 16 2 C -0.12 -5.59 5.36 30.60 0.16 -5.42 16 3 C 0.23 11.12 1.83 44.17 0.08 11.20 16 4 H -0.01 -0.35 7.35 -2.39 -0.02 -0.37 16 5 C -0.52 -28.43 8.56 25.60 0.22 -28.21 16 6 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -50.68 11.28 21.45 0.24 -50.44 16 9 Si 0.95 43.74 29.54 68.60 2.03 45.76 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 N -0.68 -28.78 6.04 -477.13 -2.88 -31.66 16 14 C 0.18 6.84 2.92 44.17 0.13 6.97 16 15 H 0.09 3.84 7.64 -2.39 -0.02 3.82 16 16 C -0.16 -4.73 9.13 71.98 0.66 -4.07 16 17 C 0.19 7.05 7.32 88.34 0.65 7.70 16 18 N -0.30 -12.03 12.22 -165.51 -2.02 -14.05 16 19 N -0.33 -11.74 12.22 -165.49 -2.02 -13.76 16 20 C 0.15 4.51 8.48 88.34 0.75 5.26 16 21 C -0.05 -0.77 10.51 71.24 0.75 -0.02 16 22 O -0.24 -8.12 10.87 -3.58 -0.04 -8.16 16 23 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.05 1.78 6.48 -2.39 -0.02 1.76 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 3.83 5.94 -2.39 -0.01 3.81 16 27 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 29 H 0.34 13.27 6.20 -89.69 -0.56 12.71 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 31 H 0.08 2.30 7.66 -2.39 -0.02 2.28 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -65.85 295.14 0.38 -65.47 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.53 Total: 16.35 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 4.54 Total: -9.51 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -6.68 Total: -109.91 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.04 Total: -8.16 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -65.85 0.38 -65.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565548981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.719 kcal (2) G-P(sol) polarization free energy of solvation -65.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds