Wall clock time and date at job start Sun Mar 29 2020 22:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53002 * 109.46886 * 119.99346 * 2 1 3 5 5 C 1.50706 * 109.47153 * 184.99546 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46894 * 109.47018 * 239.99269 * 2 1 3 14 14 C 1.46897 * 111.00472 * 306.04930 * 13 2 1 15 15 C 1.46900 * 111.00031 * 70.00259 * 13 2 1 16 16 C 1.50696 * 109.47618 * 169.99733 * 15 13 2 17 17 N 1.31069 * 126.66130 * 269.68909 * 16 15 13 18 18 N 1.28840 * 107.99245 * 179.88942 * 17 16 15 19 19 N 1.28738 * 109.39524 * 0.38010 * 18 17 16 20 20 N 1.29018 * 108.81142 * 359.76078 * 19 18 17 21 21 C 1.46496 * 126.44444 * 179.97438 * 20 19 18 22 22 H 1.09007 * 109.46878 * 300.00364 * 1 2 3 23 23 H 1.09001 * 109.46923 * 60.00438 * 1 2 3 24 24 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47178 * 65.00336 * 4 2 1 26 26 H 1.08993 * 109.47411 * 305.00018 * 4 2 1 27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 28 28 H 1.09004 * 109.46822 * 59.99631 * 14 13 2 29 29 H 1.08997 * 109.47606 * 180.02562 * 14 13 2 30 30 H 1.09007 * 109.46996 * 299.99993 * 14 13 2 31 31 H 1.09001 * 109.46982 * 290.00138 * 15 13 2 32 32 H 1.09005 * 109.47100 * 49.99755 * 15 13 2 33 33 H 1.09003 * 109.47457 * 270.03172 * 21 20 19 34 34 H 1.09006 * 109.46877 * 30.02281 * 21 20 19 35 35 H 1.08995 * 109.47456 * 150.02795 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0856 0.5396 7 6 4.2304 -1.1934 2.3579 8 7 3.5760 -1.8334 3.3023 9 14 6.0921 -1.0611 2.4369 10 1 6.7008 -2.2167 1.7303 11 1 6.5266 0.2014 1.7869 12 1 6.5287 -1.0628 3.8562 13 7 2.0196 -0.6926 -1.1993 14 6 1.4342 -2.0356 -1.3076 15 6 1.7529 0.0970 -2.4090 16 6 2.4774 -0.5166 -3.5793 17 7 3.6909 -0.2324 -3.9848 18 7 3.9501 -0.9674 -5.0107 19 7 2.9304 -1.7075 -5.2750 20 7 2.0017 -1.4587 -4.4147 21 6 0.6779 -2.0836 -4.3580 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.7516 -1.7714 1.2058 26 1 1.6053 -0.2616 2.1370 27 1 2.6093 -1.9019 3.2614 28 1 0.3489 -1.9549 -1.3692 29 1 1.8139 -2.5263 -2.2038 30 1 1.7058 -2.6222 -0.4299 31 1 0.6814 0.1051 -2.6087 32 1 2.1025 1.1187 -2.2604 33 1 -0.0233 -1.5047 -4.9593 34 1 0.7387 -3.0995 -4.7485 35 1 0.3332 -2.1116 -3.3244 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567989593.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:01 Heat of formation + Delta-G solvation = 99.495255 kcal Electronic energy + Delta-G solvation = -17668.942332 eV Core-core repulsion = 14932.213830 eV Total energy + Delta-G solvation = -2736.728501 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.23965 -39.72580 -36.71033 -35.53667 -34.11710 -31.91667 -29.99032 -28.88583 -28.25885 -26.29032 -24.93060 -24.38680 -22.67833 -20.67078 -18.84992 -18.52921 -18.43712 -16.97045 -16.56664 -15.97048 -15.64459 -15.18040 -14.90545 -14.65855 -14.58959 -14.27376 -13.61247 -13.48967 -13.24041 -12.99265 -12.89191 -12.72265 -12.64019 -12.39042 -12.19224 -12.03019 -11.93447 -11.85454 -11.40632 -11.08378 -10.58977 -10.45738 -9.10418 -8.54907 -6.20325 0.15063 1.06665 1.14550 1.52450 1.59417 1.77966 2.59410 2.83521 3.10625 3.22682 3.29894 3.83366 4.06373 4.11521 4.18486 4.24442 4.30593 4.34493 4.42475 4.49143 4.53624 4.61577 4.75133 4.85870 5.02427 5.10074 5.19912 5.21197 5.22987 5.52837 6.07555 6.15610 6.26958 6.37691 6.77218 7.52463 7.54546 8.86517 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024525 B = 0.007360 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.411950 B = 3803.578366 C = 4516.214050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.106 3.894 3 H 0.071 0.929 4 C 0.019 3.981 5 C -0.576 4.576 6 H 0.044 0.956 7 C -0.043 4.043 8 N -0.949 5.949 9 Si 1.107 2.893 10 H -0.285 1.285 11 H -0.274 1.274 12 H -0.283 1.283 13 N -0.540 5.540 14 C 0.022 3.978 15 C 0.137 3.863 16 C 0.203 3.797 17 N -0.327 5.327 18 N -0.114 5.114 19 N -0.106 5.106 20 N -0.295 5.295 21 C 0.054 3.946 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.061 0.939 25 H -0.003 1.003 26 H -0.006 1.006 27 H 0.255 0.745 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.963 1.468 -13.973 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.002 4.002 3 H 0.089 0.911 4 C -0.019 4.019 5 C -0.615 4.615 6 H 0.063 0.937 7 C -0.239 4.239 8 N -0.589 5.589 9 Si 0.931 3.069 10 H -0.211 1.211 11 H -0.200 1.200 12 H -0.209 1.209 13 N -0.265 5.265 14 C -0.126 4.126 15 C 0.007 3.993 16 C -0.076 4.076 17 N -0.177 5.177 18 N -0.108 5.108 19 N -0.092 5.092 20 N -0.099 5.099 21 C -0.085 4.085 22 H 0.078 0.922 23 H 0.100 0.900 24 H 0.080 0.920 25 H 0.015 0.985 26 H 0.012 0.988 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.019 0.860 -13.909 17.164 hybrid contribution -2.595 0.173 -0.158 2.605 sum -12.614 1.033 -14.067 18.922 Atomic orbital electron populations 1.22446 0.95512 1.02542 1.03131 1.21512 0.92993 0.97118 0.88574 0.91112 1.19240 0.95390 0.94492 0.92728 1.22350 0.93723 1.36023 1.09409 0.93737 1.26987 1.10229 0.93728 0.92945 1.70900 1.09472 1.43052 1.35467 0.83025 0.70841 0.76927 0.76068 1.21121 1.19951 1.20859 1.61768 1.60698 1.02984 1.01066 1.22577 0.98235 0.90367 1.01429 1.20676 0.97921 0.97577 0.83154 1.26261 0.91911 0.92364 0.97017 1.74958 1.12801 1.21943 1.08041 1.78569 1.17655 1.04429 1.10117 1.78693 0.94967 1.20657 1.14924 1.48759 1.15744 1.26849 1.18519 1.23149 0.75667 1.01815 1.07860 0.92190 0.89972 0.91985 0.98510 0.98777 0.93544 0.91441 0.92582 0.93328 0.87918 0.86880 0.85078 0.85823 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.31 8.44 71.98 0.61 -3.71 16 2 C 0.11 3.67 2.26 44.92 0.10 3.77 16 3 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 4 C 0.02 0.89 3.68 29.85 0.11 1.00 16 5 C -0.58 -32.53 8.84 25.60 0.23 -32.30 16 6 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 7 C -0.04 -2.51 5.46 84.65 0.46 -2.04 16 8 N -0.95 -59.05 13.65 21.45 0.29 -58.75 16 9 Si 1.11 53.56 29.90 68.60 2.05 55.61 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 13 N -0.54 -17.52 4.42 -901.63 -3.98 -21.50 16 14 C 0.02 0.60 7.23 127.69 0.92 1.52 16 15 C 0.14 3.31 4.76 85.56 0.41 3.71 16 16 C 0.20 5.81 6.77 138.13 0.93 6.74 16 17 N -0.33 -12.10 12.36 -50.45 -0.62 -12.73 16 18 N -0.11 -4.19 13.43 37.01 0.50 -3.69 16 19 N -0.11 -3.21 13.29 37.02 0.49 -2.72 16 20 N -0.30 -6.92 3.37 -359.65 -1.21 -8.13 16 21 C 0.05 0.54 10.30 127.77 1.32 1.86 16 22 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 23 H 0.08 1.39 6.91 -2.39 -0.02 1.37 16 24 H 0.06 1.44 6.33 -2.39 -0.02 1.42 16 25 H 0.00 -0.17 6.21 -2.39 -0.01 -0.18 16 26 H -0.01 -0.30 8.00 -2.39 -0.02 -0.32 16 27 H 0.26 15.79 7.22 -92.71 -0.67 15.12 16 28 H 0.07 1.30 5.47 -2.39 -0.01 1.29 16 29 H 0.06 1.46 5.45 -2.39 -0.01 1.44 16 30 H 0.05 1.75 6.37 -2.38 -0.02 1.74 16 31 H 0.10 1.49 6.73 -2.39 -0.02 1.48 16 32 H 0.11 2.77 7.93 -2.38 -0.02 2.75 16 33 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.12 0.98 4.70 -2.39 -0.01 0.97 16 Total: -1.00 -77.38 280.90 3.80 -73.58 By element: Atomic # 1 Polarization: -3.42 SS G_CDS: 1.20 Total: -2.22 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 5.09 Total: -19.44 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -4.54 Total: -107.52 kcal Atomic # 14 Polarization: 53.56 SS G_CDS: 2.05 Total: 55.61 kcal Total: -77.38 3.80 -73.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567989593.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.075 kcal (2) G-P(sol) polarization free energy of solvation -77.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds