Wall clock time and date at job start Sun Mar 29 2020 22:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99922 * 2 1 4 4 H 1.09000 * 109.47164 * 25.14899 * 3 2 1 5 5 C 1.50697 * 109.47220 * 145.15208 * 3 2 1 6 6 O 1.21295 * 119.99861 * 7.70575 * 5 3 2 7 7 N 1.34773 * 120.00105 * 187.70819 * 5 3 2 8 8 C 1.37097 * 120.00142 * 184.78590 * 7 5 3 9 9 H 1.07998 * 120.00074 * 223.57351 * 8 7 5 10 10 C 1.38949 * 119.99888 * 43.57172 * 8 7 5 11 11 N 1.31409 * 120.00111 * 14.65420 * 10 8 7 12 12 Si 1.86797 * 120.00003 * 194.64988 * 10 8 7 13 13 H 1.48501 * 109.47209 * 89.99967 * 12 10 8 14 14 H 1.48498 * 109.47253 * 210.00228 * 12 10 8 15 15 H 1.48500 * 109.47263 * 330.00187 * 12 10 8 16 16 C 1.46505 * 119.99896 * 4.51481 * 7 5 3 17 17 C 1.52998 * 117.49653 * 183.41592 * 16 7 5 18 18 C 1.52999 * 117.50195 * 114.79009 * 16 7 5 19 19 C 1.53005 * 109.47141 * 265.14818 * 3 2 1 20 20 C 1.53004 * 117.49809 * 15.06807 * 19 3 2 21 21 C 1.52994 * 59.99898 * 252.51092 * 20 19 3 22 22 H 1.08995 * 109.47162 * 63.95175 * 1 2 3 23 23 H 1.09004 * 109.46642 * 183.94593 * 1 2 3 24 24 H 1.09000 * 109.46594 * 303.94634 * 1 2 3 25 25 H 0.97002 * 120.00123 * 184.98293 * 11 10 8 26 26 H 1.09002 * 115.54663 * 329.11445 * 16 7 5 27 27 H 1.08999 * 117.49986 * 359.97438 * 17 16 7 28 28 H 1.09003 * 117.50064 * 145.01780 * 17 16 7 29 29 H 1.09000 * 117.49981 * 214.97763 * 18 16 7 30 30 H 1.09006 * 117.49687 * 359.97438 * 18 16 7 31 31 H 1.09000 * 115.54942 * 160.77509 * 19 3 2 32 32 H 1.09003 * 117.49772 * 0.02562 * 20 19 3 33 33 H 1.09005 * 117.49631 * 145.01913 * 20 19 3 34 34 H 1.09008 * 117.49496 * 252.50642 * 21 20 19 35 35 H 1.09003 * 117.51602 * 107.48569 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3082 2.0158 0.4367 5 6 3.2798 1.2902 0.8118 6 8 3.7252 0.2388 1.2212 7 7 3.9202 2.4446 1.0830 8 6 5.1253 2.4229 1.7364 9 1 5.3216 3.1276 2.5309 10 6 6.0940 1.4941 1.3765 11 7 5.9851 0.8362 0.2442 12 14 7.5513 1.1806 2.5023 13 1 7.2159 0.0915 3.4545 14 1 8.7283 0.7821 1.6892 15 1 7.8682 2.4188 3.2582 16 6 3.3315 3.7224 0.6744 17 6 4.1439 4.9914 0.9394 18 6 2.9022 4.6884 1.7804 19 6 2.3291 1.7218 -1.4374 20 6 1.6864 0.9132 -2.5662 21 6 3.1817 0.7679 -2.2765 22 1 -0.3633 0.4513 -0.9232 23 1 -0.3633 -1.0253 0.0707 24 1 -0.3632 0.5739 0.8525 25 1 6.6211 0.1369 0.0264 26 1 2.7252 3.6924 -0.2311 27 1 5.1163 4.8757 1.4182 28 1 4.0724 5.7967 0.2083 29 1 2.0137 5.2943 1.6026 30 1 3.0574 4.3730 2.8123 31 1 2.4645 2.7913 -1.5980 32 1 1.0361 0.0849 -2.2847 33 1 1.3987 1.4509 -3.4697 34 1 3.8777 1.2099 -2.9895 35 1 3.5157 -0.1561 -1.8045 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573812071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:11 Heat of formation + Delta-G solvation = -3.321698 kcal Electronic energy + Delta-G solvation = -18300.854692 eV Core-core repulsion = 15495.082211 eV Total energy + Delta-G solvation = -2805.772481 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.28042 -37.48767 -35.80278 -35.20662 -32.70463 -30.90726 -28.37485 -25.93748 -24.32843 -21.89143 -21.74003 -21.45663 -20.09415 -19.37028 -16.51673 -16.31723 -16.04282 -15.54832 -14.68173 -14.48403 -13.99801 -13.68448 -13.50263 -13.07423 -12.70439 -12.23457 -11.87689 -11.29887 -11.09724 -10.92263 -10.81328 -10.80475 -10.78351 -10.44623 -10.17384 -10.03021 -9.85867 -9.76712 -9.56644 -9.18662 -8.62832 -7.79411 -6.98474 -6.01332 -3.82775 3.35104 3.41225 3.44245 3.97945 4.12231 4.38738 4.45153 4.78284 5.03568 5.21309 5.34345 5.39694 5.50165 5.58263 5.65019 5.67484 5.77214 5.80466 5.89253 5.91897 6.04258 6.15665 6.18977 6.22104 6.44037 6.51083 6.63954 6.75979 6.93098 6.96032 7.60089 7.69420 8.33319 9.11830 9.25087 9.70445 10.36316 11.04246 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022196 B = 0.010478 C = 0.008808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.166134 B = 2671.680538 C = 3178.139687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.106 3.894 4 H 0.068 0.932 5 C 0.496 3.504 6 O -0.514 6.514 7 N -0.427 5.427 8 C -0.341 4.341 9 H 0.077 0.923 10 C 0.069 3.931 11 N -0.828 5.828 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.068 3.932 17 C -0.173 4.173 18 C -0.210 4.210 19 C -0.171 4.171 20 C -0.188 4.188 21 C -0.137 4.137 22 H 0.039 0.961 23 H 0.081 0.919 24 H 0.037 0.963 25 H 0.263 0.737 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 4.703 -3.554 10.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.271 6.271 3 C 0.044 3.956 4 H 0.086 0.914 5 C 0.282 3.718 6 O -0.389 6.389 7 N -0.150 5.150 8 C -0.467 4.467 9 H 0.094 0.906 10 C -0.142 4.142 11 N -0.461 5.461 12 Si 0.735 3.265 13 H -0.205 1.205 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.039 4.039 17 C -0.211 4.211 18 C -0.250 4.250 19 C -0.189 4.189 20 C -0.225 4.225 21 C -0.174 4.174 22 H 0.058 0.942 23 H 0.099 0.901 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.359 3.831 -3.494 9.837 hybrid contribution 0.491 0.232 0.390 0.669 sum -7.868 4.063 -3.104 9.384 Atomic orbital electron populations 1.22851 0.82470 1.02169 0.99531 1.88042 1.18059 1.26459 1.94588 1.21561 0.95778 0.84636 0.93652 0.91393 1.19427 0.84191 0.84932 0.83229 1.90525 1.65970 1.30104 1.52281 1.42620 1.18384 1.00998 1.52997 1.18837 0.89850 1.22209 1.15837 0.90569 1.25207 0.97205 0.97280 0.94467 1.69855 1.36032 1.20565 1.19664 0.86274 0.81059 0.78697 0.80465 1.20459 1.21329 1.19933 1.21925 1.00853 0.84539 0.96541 1.23051 0.97039 0.98153 1.02835 1.23335 0.98221 1.05183 0.98216 1.22659 1.07142 0.97508 0.91635 1.22996 0.97846 1.03128 0.98504 1.22675 0.91587 1.01807 1.01356 0.94225 0.90071 0.94436 0.92670 0.87650 0.87460 0.89863 0.89851 0.89092 0.87427 0.88612 0.89787 0.89586 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.14 101.05 1.02 1.42 16 2 O -0.35 -7.32 8.73 -55.02 -0.48 -7.80 16 3 C 0.11 2.19 2.16 -27.88 -0.06 2.13 16 4 H 0.07 1.25 7.29 -51.93 -0.38 0.87 16 5 C 0.50 12.98 6.00 -10.99 -0.07 12.91 16 6 O -0.51 -15.85 14.36 -14.25 -0.20 -16.05 16 7 N -0.43 -10.77 2.85 -107.73 -0.31 -11.08 16 8 C -0.34 -9.35 7.94 -14.93 -0.12 -9.47 16 9 H 0.08 2.03 7.21 -52.49 -0.38 1.65 16 10 C 0.07 1.95 4.51 -17.47 -0.08 1.87 16 11 N -0.83 -24.46 11.56 55.50 0.64 -23.82 16 12 Si 0.91 22.11 29.58 -169.99 -5.03 17.08 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 C 0.07 1.35 5.57 -67.93 -0.38 0.98 16 17 C -0.17 -3.11 9.80 -26.73 -0.26 -3.38 16 18 C -0.21 -3.60 10.36 -26.73 -0.28 -3.88 16 19 C -0.17 -3.17 5.07 -90.62 -0.46 -3.63 16 20 C -0.19 -2.99 9.45 -26.73 -0.25 -3.25 16 21 C -0.14 -2.69 9.88 -26.74 -0.26 -2.96 16 22 H 0.04 0.50 6.84 -51.93 -0.36 0.15 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.04 0.51 8.01 -51.93 -0.42 0.09 16 25 H 0.26 7.56 8.32 -40.82 -0.34 7.22 16 26 H 0.11 1.90 4.77 -51.93 -0.25 1.65 16 27 H 0.11 2.14 6.71 -51.93 -0.35 1.79 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.11 1.85 6.06 -51.93 -0.31 1.54 16 32 H 0.10 1.51 5.77 -51.93 -0.30 1.21 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 35 H 0.10 2.39 8.14 -51.93 -0.42 1.96 16 LS Contribution 287.22 15.07 4.33 4.33 Total: -1.00 -33.10 287.22 -7.07 -40.17 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.83 Total: 4.43 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.19 Total: -7.26 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.34 Total: -34.90 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.68 Total: -23.85 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.10 -7.07 -40.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573812071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.848 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds