Wall clock time and date at job start Sun Mar 29 2020 22:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99922 * 2 1 4 4 H 1.09000 * 109.47164 * 25.14899 * 3 2 1 5 5 C 1.50697 * 109.47220 * 145.15208 * 3 2 1 6 6 O 1.21295 * 119.99861 * 7.70575 * 5 3 2 7 7 N 1.34773 * 120.00105 * 187.70819 * 5 3 2 8 8 C 1.37097 * 120.00142 * 184.78590 * 7 5 3 9 9 H 1.07998 * 120.00074 * 223.57351 * 8 7 5 10 10 C 1.38949 * 119.99888 * 43.57172 * 8 7 5 11 11 N 1.31409 * 120.00111 * 14.65420 * 10 8 7 12 12 Si 1.86797 * 120.00003 * 194.64988 * 10 8 7 13 13 H 1.48501 * 109.47209 * 89.99967 * 12 10 8 14 14 H 1.48498 * 109.47253 * 210.00228 * 12 10 8 15 15 H 1.48500 * 109.47263 * 330.00187 * 12 10 8 16 16 C 1.46505 * 119.99896 * 4.51481 * 7 5 3 17 17 C 1.52998 * 117.49653 * 183.41592 * 16 7 5 18 18 C 1.52999 * 117.50195 * 114.79009 * 16 7 5 19 19 C 1.53005 * 109.47141 * 265.14818 * 3 2 1 20 20 C 1.53004 * 117.49809 * 15.06807 * 19 3 2 21 21 C 1.52994 * 59.99898 * 252.51092 * 20 19 3 22 22 H 1.08995 * 109.47162 * 63.95175 * 1 2 3 23 23 H 1.09004 * 109.46642 * 183.94593 * 1 2 3 24 24 H 1.09000 * 109.46594 * 303.94634 * 1 2 3 25 25 H 0.97002 * 120.00123 * 184.98293 * 11 10 8 26 26 H 1.09002 * 115.54663 * 329.11445 * 16 7 5 27 27 H 1.08999 * 117.49986 * 359.97438 * 17 16 7 28 28 H 1.09003 * 117.50064 * 145.01780 * 17 16 7 29 29 H 1.09000 * 117.49981 * 214.97763 * 18 16 7 30 30 H 1.09006 * 117.49687 * 359.97438 * 18 16 7 31 31 H 1.09000 * 115.54942 * 160.77509 * 19 3 2 32 32 H 1.09003 * 117.49772 * 0.02562 * 20 19 3 33 33 H 1.09005 * 117.49631 * 145.01913 * 20 19 3 34 34 H 1.09008 * 117.49496 * 252.50642 * 21 20 19 35 35 H 1.09003 * 117.51602 * 107.48569 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3082 2.0158 0.4367 5 6 3.2798 1.2902 0.8118 6 8 3.7252 0.2388 1.2212 7 7 3.9202 2.4446 1.0830 8 6 5.1253 2.4229 1.7364 9 1 5.3216 3.1276 2.5309 10 6 6.0940 1.4941 1.3765 11 7 5.9851 0.8362 0.2442 12 14 7.5513 1.1806 2.5023 13 1 7.2159 0.0915 3.4545 14 1 8.7283 0.7821 1.6892 15 1 7.8682 2.4188 3.2582 16 6 3.3315 3.7224 0.6744 17 6 4.1439 4.9914 0.9394 18 6 2.9022 4.6884 1.7804 19 6 2.3291 1.7218 -1.4374 20 6 1.6864 0.9132 -2.5662 21 6 3.1817 0.7679 -2.2765 22 1 -0.3633 0.4513 -0.9232 23 1 -0.3633 -1.0253 0.0707 24 1 -0.3632 0.5739 0.8525 25 1 6.6211 0.1369 0.0264 26 1 2.7252 3.6924 -0.2311 27 1 5.1163 4.8757 1.4182 28 1 4.0724 5.7967 0.2083 29 1 2.0137 5.2943 1.6026 30 1 3.0574 4.3730 2.8123 31 1 2.4645 2.7913 -1.5980 32 1 1.0361 0.0849 -2.2847 33 1 1.3987 1.4509 -3.4697 34 1 3.8777 1.2099 -2.9895 35 1 3.5157 -0.1561 -1.8045 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573812071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:11 Heat of formation + Delta-G solvation = -24.602042 kcal Electronic energy + Delta-G solvation = -18301.777477 eV Core-core repulsion = 15495.082211 eV Total energy + Delta-G solvation = -2806.695266 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.95581 -39.08094 -37.57715 -36.63571 -34.70843 -32.84588 -29.98371 -27.38172 -26.16291 -23.48645 -23.13134 -22.92699 -21.67964 -21.16516 -18.35967 -17.82048 -17.77160 -17.08316 -16.58656 -16.05563 -15.56612 -15.36222 -15.07215 -14.69939 -14.33620 -13.81257 -13.54111 -12.98345 -12.94091 -12.80804 -12.42354 -12.24080 -12.19465 -12.12497 -12.06554 -11.66926 -11.37872 -11.30349 -10.99313 -10.67618 -10.58645 -9.71397 -8.96400 -8.12079 -5.96645 1.35981 1.43393 1.48224 2.19910 2.40804 2.66730 2.94340 3.14132 3.40028 3.43870 3.75180 3.95733 4.03469 4.12044 4.29813 4.35408 4.41091 4.46075 4.55518 4.61024 4.68795 4.80560 4.88644 4.90958 5.02158 5.08408 5.23951 5.34684 5.38655 5.47797 5.51791 6.15827 6.33661 7.06504 7.27731 7.71431 8.40294 8.91164 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022196 B = 0.010478 C = 0.008808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.166134 B = 2671.680538 C = 3178.139687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.392 6.392 3 C 0.116 3.884 4 H 0.096 0.904 5 C 0.478 3.522 6 O -0.580 6.580 7 N -0.440 5.440 8 C -0.349 4.349 9 H 0.078 0.922 10 C 0.016 3.984 11 N -0.859 5.859 12 Si 0.963 3.037 13 H -0.294 1.294 14 H -0.283 1.283 15 H -0.253 1.253 16 C 0.036 3.964 17 C -0.169 4.169 18 C -0.184 4.184 19 C -0.176 4.176 20 C -0.142 4.142 21 C -0.167 4.167 22 H 0.066 0.934 23 H 0.095 0.905 24 H 0.048 0.952 25 H 0.255 0.745 26 H 0.131 0.869 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.959 7.020 -4.346 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.310 6.310 3 C 0.055 3.945 4 H 0.113 0.887 5 C 0.267 3.733 6 O -0.460 6.460 7 N -0.162 5.162 8 C -0.476 4.476 9 H 0.095 0.905 10 C -0.190 4.190 11 N -0.494 5.494 12 Si 0.789 3.211 13 H -0.221 1.221 14 H -0.209 1.209 15 H -0.177 1.177 16 C -0.069 4.069 17 C -0.207 4.207 18 C -0.222 4.222 19 C -0.194 4.194 20 C -0.178 4.178 21 C -0.205 4.205 22 H 0.084 0.916 23 H 0.114 0.886 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.148 0.852 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.117 0.883 33 H 0.141 0.859 34 H 0.107 0.893 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.495 6.217 -4.284 12.929 hybrid contribution 1.069 -0.457 0.687 1.350 sum -9.426 5.760 -3.597 11.618 Atomic orbital electron populations 1.23145 0.79407 1.03792 1.01360 1.88007 1.21440 1.26708 1.94836 1.21342 0.93533 0.85522 0.94122 0.88668 1.20483 0.85640 0.84236 0.82944 1.90467 1.68258 1.32406 1.54911 1.42839 1.17768 1.03009 1.52545 1.19078 0.90712 1.21822 1.16029 0.90482 1.26017 0.99854 0.97430 0.95702 1.69980 1.36934 1.21229 1.21299 0.85407 0.78351 0.78693 0.78655 1.22054 1.20863 1.17654 1.22260 1.02766 0.82827 0.99051 1.23114 0.96145 0.97830 1.03567 1.23365 0.99364 1.03237 0.96259 1.22709 1.07472 0.98276 0.90969 1.23083 0.94367 1.02056 0.98332 1.22477 0.94580 1.00626 1.02781 0.91601 0.88632 0.93324 0.93610 0.85167 0.90155 0.86249 0.85468 0.90921 0.85548 0.88264 0.85859 0.89307 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.14 113.37 1.15 1.65 16 2 O -0.39 -16.00 8.73 -130.06 -1.13 -17.14 16 3 C 0.12 4.70 2.16 29.85 0.06 4.77 16 4 H 0.10 3.24 7.29 -2.39 -0.02 3.22 16 5 C 0.48 25.57 6.00 87.66 0.53 26.10 16 6 O -0.58 -37.59 14.36 15.85 0.23 -37.36 16 7 N -0.44 -22.34 2.85 -613.13 -1.75 -24.08 16 8 C -0.35 -19.57 7.94 84.04 0.67 -18.91 16 9 H 0.08 4.18 7.21 -2.91 -0.02 4.16 16 10 C 0.02 0.95 4.51 84.93 0.38 1.33 16 11 N -0.86 -53.20 11.56 21.66 0.25 -52.95 16 12 Si 0.96 46.84 29.58 68.60 2.03 48.87 16 13 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 14 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 15 H -0.25 -11.24 7.11 99.48 0.71 -10.54 16 16 C 0.04 1.35 5.57 44.99 0.25 1.60 16 17 C -0.17 -5.64 9.80 30.60 0.30 -5.34 16 18 C -0.18 -5.68 10.36 30.60 0.32 -5.36 16 19 C -0.18 -6.17 5.07 -10.79 -0.05 -6.23 16 20 C -0.14 -4.07 9.45 30.59 0.29 -3.79 16 21 C -0.17 -6.61 9.88 30.59 0.30 -6.30 16 22 H 0.07 1.41 6.84 -2.39 -0.02 1.40 16 23 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 24 H 0.05 1.19 8.01 -2.39 -0.02 1.17 16 25 H 0.25 15.48 8.32 -92.71 -0.77 14.71 16 26 H 0.13 4.23 4.77 -2.39 -0.01 4.22 16 27 H 0.08 3.14 6.71 -2.39 -0.02 3.12 16 28 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 31 H 0.13 3.91 6.06 -2.39 -0.01 3.90 16 32 H 0.10 2.82 5.77 -2.39 -0.01 2.80 16 33 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 34 H 0.09 3.35 8.14 -2.38 -0.02 3.33 16 35 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -77.43 287.22 4.90 -72.52 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.08 Total: 20.62 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 4.19 Total: -10.48 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -1.50 Total: -77.03 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.91 Total: -54.50 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -77.43 4.90 -72.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573812071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.922 kcal (2) G-P(sol) polarization free energy of solvation -77.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds