Wall clock time and date at job start Sun Mar 29 2020 22:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47150 * 2 1 4 4 N 1.31124 * 126.55213 * 90.24955 * 3 2 1 5 5 C 1.34497 * 105.61533 * 180.12201 * 4 3 2 6 6 C 1.50698 * 126.28457 * 179.90495 * 5 4 3 7 7 N 1.46896 * 109.47416 * 269.71196 * 6 5 4 8 8 C 1.46897 * 111.00396 * 176.19838 * 7 6 5 9 9 H 1.09000 * 109.46917 * 35.79002 * 8 7 6 10 10 C 1.50702 * 109.47292 * 155.78647 * 8 7 6 11 11 H 1.08005 * 119.99978 * 0.02562 * 10 8 7 12 12 C 1.37872 * 119.99807 * 179.97438 * 10 8 7 13 13 N 1.31509 * 120.00502 * 0.02562 * 12 10 8 14 14 Si 1.86810 * 119.99837 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.46758 * 60.00468 * 14 12 10 16 16 H 1.48498 * 109.46992 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47045 * 300.00589 * 14 12 10 18 18 C 1.52997 * 109.47201 * 275.78823 * 8 7 6 19 19 C 1.53004 * 109.47237 * 294.08819 * 18 8 7 20 20 N 1.29943 * 107.42253 * 359.64107 * 5 4 3 21 21 O 1.21297 * 110.25041 * 0.22804 * 20 5 4 22 22 H 1.09000 * 109.46827 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47014 * 300.00089 * 1 2 3 24 24 H 1.08993 * 109.46761 * 60.00239 * 1 2 3 25 25 H 1.09000 * 109.47014 * 239.99911 * 2 1 3 26 26 H 1.09005 * 109.46793 * 120.00202 * 2 1 3 27 27 H 1.09006 * 109.46762 * 149.71716 * 6 5 4 28 28 H 1.08996 * 109.47764 * 29.71912 * 6 5 4 29 29 H 1.00905 * 111.00026 * 52.24048 * 7 6 5 30 30 H 0.96996 * 120.00470 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.47042 * 174.08859 * 18 8 7 32 32 H 1.09000 * 109.47079 * 54.08763 * 18 8 7 33 33 H 1.08995 * 109.46842 * 178.55278 * 19 18 8 34 34 H 1.08996 * 109.46829 * 58.55624 * 19 18 8 35 35 H 1.08994 * 109.46569 * 298.55914 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2970 2.1555 1.0533 5 6 2.7112 3.3415 0.5727 6 6 3.1339 4.5359 1.3886 7 7 1.9658 5.3862 1.6535 8 6 2.3225 6.5149 2.5235 9 1 3.3301 6.8544 2.2833 10 6 1.3474 7.6434 2.3075 11 1 0.5428 7.5331 1.5956 12 6 1.4818 8.8163 3.0196 13 7 2.4612 8.9505 3.8869 14 14 0.2735 10.2155 2.7515 15 1 -1.0995 9.7531 3.0777 16 1 0.6341 11.3564 3.6310 17 1 0.3256 10.6493 1.3322 18 6 2.2699 6.0682 3.9858 19 6 0.8263 5.7314 4.3646 20 7 2.6852 3.2662 -0.7242 21 8 2.2982 2.1710 -1.0736 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8811 5.1066 0.8370 28 1 3.5594 4.1983 2.3336 29 1 1.2097 4.8486 2.0505 30 1 2.5556 9.7756 4.3882 31 1 2.6350 6.8723 4.6247 32 1 2.8958 5.1857 4.1189 33 1 0.7926 5.3886 5.3987 34 1 0.4527 4.9450 3.7089 35 1 0.2054 6.6206 4.2560 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575812221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:16 Heat of formation + Delta-G solvation = 57.054308 kcal Electronic energy + Delta-G solvation = -17036.952363 eV Core-core repulsion = 14266.090733 eV Total energy + Delta-G solvation = -2770.861630 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.38834 -36.95417 -35.71448 -34.65131 -32.50180 -31.11008 -30.29789 -27.16738 -25.16119 -24.92228 -23.27661 -22.85061 -20.89299 -19.35095 -17.92869 -17.28199 -16.21217 -15.50461 -14.90193 -14.78902 -14.43903 -13.86274 -13.27470 -13.07949 -12.86615 -12.55032 -12.31681 -12.09548 -11.90959 -11.75025 -11.42942 -11.27049 -10.90770 -10.83996 -10.74505 -10.53215 -10.02094 -9.95945 -9.64730 -9.55178 -9.02676 -8.35029 -7.34457 -5.98178 -3.99841 1.33419 2.43954 2.92030 3.35219 3.39225 3.42996 3.79351 4.30003 4.45738 4.79209 4.82208 4.89210 5.32161 5.33816 5.45071 5.47517 5.59773 5.77205 5.88934 5.97518 6.12737 6.21715 6.35348 6.38691 6.56054 6.90605 7.19362 7.24464 7.49396 7.66593 7.85786 8.22045 8.40383 8.44765 8.55102 9.04562 9.63510 11.09058 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036584 B = 0.005118 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.183985 B = 5469.045808 C = 5525.602131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.026 4.026 3 C 0.164 3.836 4 N -0.478 5.478 5 C 0.186 3.814 6 C 0.146 3.854 7 N -0.676 5.676 8 C 0.217 3.783 9 H 0.037 0.963 10 C -0.490 4.490 11 H 0.061 0.939 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.896 3.104 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.278 1.278 18 C -0.146 4.146 19 C -0.127 4.127 20 N -0.371 5.371 21 O 0.073 5.927 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.331 0.669 30 H 0.260 0.740 31 H 0.094 0.906 32 H 0.013 0.987 33 H 0.023 0.977 34 H 0.029 0.971 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 -16.719 -5.064 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.057 4.057 4 N -0.212 5.212 5 C -0.088 4.088 6 C 0.015 3.985 7 N -0.309 5.309 8 C 0.109 3.891 9 H 0.054 0.946 10 C -0.529 4.529 11 H 0.079 0.921 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.186 4.186 19 C -0.185 4.185 20 N -0.078 5.078 21 O 0.014 5.986 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.981 -15.433 -5.608 16.450 hybrid contribution -0.535 0.238 0.773 0.970 sum -1.517 -15.195 -4.835 16.018 Atomic orbital electron populations 1.21794 0.92657 1.03143 1.03426 1.20119 0.97170 0.83660 1.05536 1.28807 0.97197 0.98501 0.81225 1.71889 1.17609 1.02771 1.28943 1.26069 0.99151 0.95344 0.88207 1.20237 0.95661 0.86872 0.95767 1.60977 1.06080 1.10692 1.53169 1.19253 0.97310 0.86711 0.85781 0.94559 1.20969 1.12586 0.97520 1.21823 0.92074 1.24889 0.95767 0.98308 0.95242 1.69865 1.31171 1.26635 1.25850 0.86600 0.81398 0.81584 0.78051 1.20370 1.21450 1.20317 1.22115 0.94918 0.99018 1.02510 1.21555 0.99017 1.00691 0.97196 1.74666 1.18064 0.98993 1.16099 1.85288 1.59731 1.17719 1.35839 0.90673 0.91541 0.91819 0.88296 0.87519 0.89036 0.92808 0.85025 0.92994 0.88723 0.96875 0.95762 0.95246 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.90 37.16 0.37 -0.69 16 2 C -0.03 -0.19 6.56 -27.88 -0.18 -0.38 16 3 C 0.16 2.14 7.77 -13.06 -0.10 2.04 16 4 N -0.48 -7.85 11.55 -9.88 -0.11 -7.97 16 5 C 0.19 3.40 7.69 -156.37 -1.20 2.20 16 6 C 0.15 2.84 6.11 -4.98 -0.03 2.81 16 7 N -0.68 -15.05 6.24 -109.23 -0.68 -15.73 16 8 C 0.22 5.41 2.33 -68.87 -0.16 5.25 16 9 H 0.04 0.99 7.86 -51.93 -0.41 0.58 16 10 C -0.49 -13.40 7.35 -34.44 -0.25 -13.66 16 11 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 12 C 0.06 1.61 5.22 -17.82 -0.09 1.51 16 13 N -0.90 -25.21 11.39 55.43 0.63 -24.58 16 14 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C -0.15 -3.44 5.50 -26.73 -0.15 -3.59 16 19 C -0.13 -2.77 9.39 37.16 0.35 -2.42 16 20 N -0.37 -6.73 12.16 30.89 0.38 -6.35 16 21 O 0.07 1.10 11.31 18.11 0.20 1.31 16 22 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.78 8.13 -51.93 -0.42 1.35 16 28 H 0.05 1.02 7.23 -51.93 -0.38 0.64 16 29 H 0.33 7.25 6.55 -39.29 -0.26 6.99 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.09 2.48 6.25 -51.93 -0.32 2.15 16 32 H 0.01 0.28 7.24 -51.93 -0.38 -0.10 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.03 0.59 6.42 -51.93 -0.33 0.26 16 35 H 0.07 1.59 7.04 -51.93 -0.37 1.22 16 LS Contribution 293.01 15.07 4.42 4.42 Total: -1.00 -30.11 293.01 -6.59 -36.70 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.94 Total: 2.66 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.45 Total: -6.92 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.21 Total: -54.64 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: 0.20 Total: 1.31 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.11 -6.59 -36.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575812221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.752 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds