Wall clock time and date at job start Sun Mar 29 2020 22:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47150 * 2 1 4 4 N 1.31124 * 126.55213 * 90.24955 * 3 2 1 5 5 C 1.34497 * 105.61533 * 180.12201 * 4 3 2 6 6 C 1.50698 * 126.28457 * 179.90495 * 5 4 3 7 7 N 1.46896 * 109.47416 * 269.71196 * 6 5 4 8 8 C 1.46897 * 111.00396 * 176.19838 * 7 6 5 9 9 H 1.09000 * 109.46917 * 35.79002 * 8 7 6 10 10 C 1.50702 * 109.47292 * 155.78647 * 8 7 6 11 11 H 1.08005 * 119.99978 * 0.02562 * 10 8 7 12 12 C 1.37872 * 119.99807 * 179.97438 * 10 8 7 13 13 N 1.31509 * 120.00502 * 0.02562 * 12 10 8 14 14 Si 1.86810 * 119.99837 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.46758 * 60.00468 * 14 12 10 16 16 H 1.48498 * 109.46992 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47045 * 300.00589 * 14 12 10 18 18 C 1.52997 * 109.47201 * 275.78823 * 8 7 6 19 19 C 1.53004 * 109.47237 * 294.08819 * 18 8 7 20 20 N 1.29943 * 107.42253 * 359.64107 * 5 4 3 21 21 O 1.21297 * 110.25041 * 0.22804 * 20 5 4 22 22 H 1.09000 * 109.46827 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47014 * 300.00089 * 1 2 3 24 24 H 1.08993 * 109.46761 * 60.00239 * 1 2 3 25 25 H 1.09000 * 109.47014 * 239.99911 * 2 1 3 26 26 H 1.09005 * 109.46793 * 120.00202 * 2 1 3 27 27 H 1.09006 * 109.46762 * 149.71716 * 6 5 4 28 28 H 1.08996 * 109.47764 * 29.71912 * 6 5 4 29 29 H 1.00905 * 111.00026 * 52.24048 * 7 6 5 30 30 H 0.96996 * 120.00470 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.47042 * 174.08859 * 18 8 7 32 32 H 1.09000 * 109.47079 * 54.08763 * 18 8 7 33 33 H 1.08995 * 109.46842 * 178.55278 * 19 18 8 34 34 H 1.08996 * 109.46829 * 58.55624 * 19 18 8 35 35 H 1.08994 * 109.46569 * 298.55914 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2970 2.1555 1.0533 5 6 2.7112 3.3415 0.5727 6 6 3.1339 4.5359 1.3886 7 7 1.9658 5.3862 1.6535 8 6 2.3225 6.5149 2.5235 9 1 3.3301 6.8544 2.2833 10 6 1.3474 7.6434 2.3075 11 1 0.5428 7.5331 1.5956 12 6 1.4818 8.8163 3.0196 13 7 2.4612 8.9505 3.8869 14 14 0.2735 10.2155 2.7515 15 1 -1.0995 9.7531 3.0777 16 1 0.6341 11.3564 3.6310 17 1 0.3256 10.6493 1.3322 18 6 2.2699 6.0682 3.9858 19 6 0.8263 5.7314 4.3646 20 7 2.6852 3.2662 -0.7242 21 8 2.2982 2.1710 -1.0736 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8811 5.1066 0.8370 28 1 3.5594 4.1983 2.3336 29 1 1.2097 4.8486 2.0505 30 1 2.5556 9.7756 4.3882 31 1 2.6350 6.8723 4.6247 32 1 2.8958 5.1857 4.1189 33 1 0.7926 5.3886 5.3987 34 1 0.4527 4.9450 3.7089 35 1 0.2054 6.6206 4.2560 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575812221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:16 Heat of formation + Delta-G solvation = 35.372479 kcal Electronic energy + Delta-G solvation = -17037.892558 eV Core-core repulsion = 14266.090733 eV Total energy + Delta-G solvation = -2771.801825 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.65897 -38.70484 -37.00531 -35.72924 -34.31679 -32.61374 -31.72080 -28.99005 -26.95122 -25.79416 -25.16688 -24.09856 -22.04306 -21.28080 -19.20376 -18.62438 -18.09651 -16.89768 -16.76137 -16.06385 -15.68368 -15.18581 -14.91080 -14.57793 -14.30390 -13.93108 -13.78527 -13.55337 -13.39838 -12.82208 -12.73738 -12.63867 -12.51956 -12.46269 -12.13759 -11.97287 -11.92504 -11.76955 -11.46909 -11.08318 -10.91727 -10.45619 -9.14768 -8.08196 -6.16809 0.18850 1.13271 1.43512 1.44543 1.52187 1.93055 2.43900 2.60436 3.03237 3.20978 3.64531 3.94357 4.22121 4.24070 4.29621 4.42905 4.49643 4.58239 4.59322 4.70311 4.84921 4.94786 5.00662 5.07452 5.13905 5.25695 5.36658 5.36791 5.64610 5.70338 5.75416 6.23653 6.53835 6.61853 6.91335 7.20772 7.50204 8.97458 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036584 B = 0.005118 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.183985 B = 5469.045808 C = 5525.602131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 C 0.183 3.817 4 N -0.502 5.502 5 C 0.169 3.831 6 C 0.152 3.848 7 N -0.681 5.681 8 C 0.223 3.777 9 H 0.006 0.994 10 C -0.505 4.505 11 H 0.049 0.951 12 C 0.018 3.982 13 N -0.917 5.917 14 Si 0.953 3.047 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.278 1.278 18 C -0.138 4.138 19 C -0.118 4.118 20 N -0.395 5.395 21 O 0.081 5.919 22 H 0.106 0.894 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.134 0.866 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.334 0.666 30 H 0.261 0.739 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 -18.624 -5.430 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.063 4.063 3 C -0.037 4.037 4 N -0.236 5.236 5 C -0.104 4.104 6 C 0.021 3.979 7 N -0.314 5.314 8 C 0.115 3.885 9 H 0.024 0.976 10 C -0.544 4.544 11 H 0.067 0.933 12 C -0.181 4.181 13 N -0.557 5.557 14 Si 0.779 3.221 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.203 1.203 18 C -0.178 4.178 19 C -0.175 4.175 20 N -0.102 5.102 21 O 0.020 5.980 22 H 0.124 0.876 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.152 0.848 26 H 0.142 0.858 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.152 0.848 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.942 -17.352 -5.967 18.452 hybrid contribution -0.233 0.696 0.829 1.107 sum -2.176 -16.656 -5.138 17.566 Atomic orbital electron populations 1.21811 0.92012 1.04800 1.02187 1.20582 0.97405 0.80246 1.08098 1.29946 0.94408 0.99619 0.79709 1.71871 1.19024 1.02503 1.30181 1.25787 1.00522 0.95741 0.88363 1.20064 0.94489 0.87150 0.96219 1.60815 1.07270 1.10868 1.52430 1.19016 0.95066 0.87321 0.87137 0.97567 1.21153 1.12735 0.98794 1.21732 0.93295 1.25550 0.97200 1.00343 0.94958 1.69983 1.32299 1.27112 1.26324 0.85692 0.79656 0.78938 0.77803 1.19681 1.20887 1.20332 1.21955 0.96393 0.98592 1.00848 1.21436 0.97137 1.00040 0.98906 1.74639 1.18861 1.00563 1.16122 1.85249 1.59449 1.17111 1.36197 0.87574 0.93545 0.92309 0.84776 0.85847 0.89694 0.92306 0.84764 0.92985 0.91402 0.95333 0.93487 0.93979 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.90 71.98 0.71 -0.92 16 2 C -0.02 -0.28 6.56 29.85 0.20 -0.09 16 3 C 0.18 4.42 7.77 88.38 0.69 5.10 16 4 N -0.50 -15.93 11.55 -303.24 -3.50 -19.43 16 5 C 0.17 6.16 7.69 138.46 1.06 7.22 16 6 C 0.15 5.99 6.11 85.56 0.52 6.51 16 7 N -0.68 -30.68 6.24 -499.48 -3.12 -33.80 16 8 C 0.22 11.35 2.33 44.17 0.10 11.45 16 9 H 0.01 0.36 7.86 -2.39 -0.02 0.34 16 10 C -0.51 -28.07 7.35 25.60 0.19 -27.89 16 11 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 12 C 0.02 1.01 5.22 84.65 0.44 1.45 16 13 N -0.92 -52.31 11.39 21.44 0.24 -52.06 16 14 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 C -0.14 -6.54 5.50 30.59 0.17 -6.37 16 19 C -0.12 -5.04 9.39 71.98 0.68 -4.37 16 20 N -0.39 -14.16 12.16 -60.35 -0.73 -14.89 16 21 O 0.08 2.31 11.31 74.88 0.85 3.15 16 22 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.12 1.10 8.14 -2.38 -0.02 1.09 16 27 H 0.08 3.41 8.13 -2.38 -0.02 3.39 16 28 H 0.06 2.24 7.23 -2.39 -0.02 2.22 16 29 H 0.33 14.59 6.55 -89.69 -0.59 14.00 16 30 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.07 3.60 6.25 -2.39 -0.01 3.58 16 32 H 0.03 1.23 7.24 -2.39 -0.02 1.21 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.66 6.42 -2.39 -0.02 1.65 16 35 H 0.04 2.06 7.04 -2.39 -0.02 2.04 16 Total: -1.00 -65.41 293.01 1.03 -64.39 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.50 Total: 14.31 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 4.76 Total: -7.90 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -7.11 Total: -120.19 kcal Atomic # 8 Polarization: 2.31 SS G_CDS: 0.85 Total: 3.15 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -65.41 1.03 -64.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575812221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.759 kcal (2) G-P(sol) polarization free energy of solvation -65.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds