Wall clock time and date at job start Sun Mar 29 2020 22:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46998 * 2 1 4 4 N 1.31130 * 126.54839 * 89.71456 * 3 2 1 5 5 C 1.34494 * 105.61514 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.28872 * 180.13132 * 5 4 3 7 7 N 1.46900 * 109.46688 * 270.27799 * 6 5 4 8 8 C 1.46899 * 110.99770 * 174.83817 * 7 6 5 9 9 H 1.08997 * 109.47380 * 325.90208 * 8 7 6 10 10 C 1.50705 * 109.47211 * 205.90183 * 8 7 6 11 11 H 1.08003 * 119.99828 * 0.02562 * 10 8 7 12 12 C 1.37877 * 120.00354 * 179.97438 * 10 8 7 13 13 N 1.31518 * 119.99634 * 0.02562 * 12 10 8 14 14 Si 1.86789 * 120.00348 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47065 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47312 * 119.99818 * 14 12 10 17 17 H 1.48503 * 109.47619 * 240.00175 * 14 12 10 18 18 C 1.52996 * 109.47168 * 85.90618 * 8 7 6 19 19 C 1.52993 * 109.47571 * 65.15653 * 18 8 7 20 20 N 1.29945 * 107.42367 * 0.34599 * 5 4 3 21 21 O 1.21306 * 110.25189 * 359.77929 * 20 5 4 22 22 H 1.09004 * 109.47611 * 59.99722 * 1 2 3 23 23 H 1.09000 * 109.47158 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47595 * 299.99780 * 1 2 3 25 25 H 1.09000 * 109.47138 * 240.00413 * 2 1 3 26 26 H 1.08998 * 109.47196 * 120.00161 * 2 1 3 27 27 H 1.08996 * 109.47110 * 30.27920 * 6 5 4 28 28 H 1.09001 * 109.47340 * 150.28237 * 6 5 4 29 29 H 1.00897 * 111.00293 * 298.79463 * 7 6 5 30 30 H 0.96999 * 119.99826 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.47511 * 185.16360 * 18 8 7 32 32 H 1.09001 * 109.46956 * 305.15369 * 18 8 7 33 33 H 1.09000 * 109.47217 * 294.85189 * 19 18 8 34 34 H 1.09001 * 109.47102 * 54.84987 * 19 18 8 35 35 H 1.09000 * 109.47332 * 174.85007 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2876 2.1588 1.0534 5 6 2.7091 3.3422 0.5729 6 6 3.1304 4.5371 1.3888 7 7 1.9608 5.3851 1.6552 8 6 2.3091 6.4959 2.5511 9 1 3.0658 6.1653 3.2626 10 6 1.0790 6.9436 3.2978 11 1 0.1332 6.4518 3.1245 12 6 1.1612 7.9804 4.2031 13 7 2.3130 8.5789 4.4145 14 14 -0.3633 8.5348 5.1291 15 1 -1.5234 7.7057 4.7143 16 1 -0.1403 8.3780 6.5888 17 1 -0.6384 9.9612 4.8209 18 6 2.8584 7.6624 1.7275 19 6 1.7554 8.2098 0.8196 20 7 2.6819 3.2674 -0.7241 21 8 2.2960 2.1718 -1.0736 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.5575 4.1999 2.3332 28 1 3.8759 5.1095 0.8367 29 1 1.5584 5.7266 0.7953 30 1 2.3708 9.3085 5.0511 31 1 3.2019 8.4505 2.3977 32 1 3.6924 7.3154 1.1175 33 1 1.4759 7.4506 0.0892 34 1 0.8857 8.4720 1.4220 35 1 2.1187 9.0969 0.3007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575812222.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:18 Heat of formation + Delta-G solvation = 57.043344 kcal Electronic energy + Delta-G solvation = -17004.207672 eV Core-core repulsion = 14233.345566 eV Total energy + Delta-G solvation = -2770.862106 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.35702 -36.92465 -35.69533 -34.62791 -32.51311 -31.08917 -30.31237 -27.15478 -25.15104 -24.90472 -23.27704 -22.86483 -20.79502 -19.36103 -17.91056 -17.34461 -16.15481 -15.41347 -14.87599 -14.78899 -14.57779 -13.81855 -13.24684 -13.00791 -12.88055 -12.56650 -12.41735 -12.01343 -11.89297 -11.74609 -11.35613 -11.21906 -10.93728 -10.77028 -10.72353 -10.52573 -10.02577 -9.95629 -9.64300 -9.57719 -9.02813 -8.35931 -7.35556 -5.98851 -4.00161 1.34241 2.49062 2.94480 3.31941 3.40061 3.45532 3.84360 4.29553 4.45601 4.83502 4.86636 4.93027 5.33119 5.37714 5.41420 5.50599 5.64409 5.79902 5.91112 5.99650 6.10050 6.29596 6.33779 6.36430 6.54383 6.87788 7.18614 7.22625 7.49094 7.65268 7.85981 8.21315 8.39910 8.44755 8.54248 9.05033 9.63205 11.08435 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031273 B = 0.005434 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.137400 B = 5151.078176 C = 5650.251798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.025 4.025 3 C 0.163 3.837 4 N -0.463 5.463 5 C 0.193 3.807 6 C 0.145 3.855 7 N -0.675 5.675 8 C 0.217 3.783 9 H 0.037 0.963 10 C -0.487 4.487 11 H 0.063 0.937 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.895 3.105 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.286 1.286 18 C -0.147 4.147 19 C -0.131 4.131 20 N -0.390 5.390 21 O 0.070 5.930 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.048 0.952 29 H 0.330 0.670 30 H 0.259 0.741 31 H 0.096 0.904 32 H 0.011 0.989 33 H 0.026 0.974 34 H 0.070 0.930 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 -13.923 -8.933 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.064 4.064 3 C -0.058 4.058 4 N -0.197 5.197 5 C -0.080 4.080 6 C 0.014 3.986 7 N -0.308 5.308 8 C 0.110 3.890 9 H 0.055 0.945 10 C -0.526 4.526 11 H 0.081 0.919 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.723 3.277 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.186 4.186 19 C -0.188 4.188 20 N -0.099 5.099 21 O 0.012 5.988 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.116 0.884 26 H 0.125 0.875 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.148 0.852 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.221 -13.410 -8.383 15.817 hybrid contribution -0.253 0.886 -0.137 0.931 sum -0.475 -12.524 -8.521 15.156 Atomic orbital electron populations 1.21795 0.92656 1.03110 1.03474 1.20115 0.97179 0.83646 1.05499 1.28881 0.97278 0.98517 0.81121 1.71916 1.16630 1.02605 1.28504 1.26099 0.98310 0.95889 0.87701 1.20207 0.93887 0.87436 0.97054 1.60811 1.26220 1.24789 1.18972 1.19280 0.96570 0.83869 0.89322 0.94507 1.21056 0.95077 1.15348 1.21134 0.91926 1.24903 0.96052 0.96463 0.96905 1.69889 1.23873 1.24136 1.35646 0.86485 0.83342 0.78257 0.79610 1.19769 1.21130 1.21212 1.22127 0.95513 1.03005 0.97973 1.21601 1.01021 0.97828 0.98365 1.74634 1.19276 0.99759 1.16206 1.85247 1.60085 1.17570 1.35892 0.91934 0.90703 0.91377 0.88386 0.87451 0.88447 0.93417 0.85182 0.93114 0.88603 0.96994 0.95490 0.91136 0.95604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.77 16 2 C -0.03 -0.20 6.56 -27.88 -0.18 -0.38 16 3 C 0.16 2.20 7.77 -13.06 -0.10 2.10 16 4 N -0.46 -7.97 11.55 -9.87 -0.11 -8.08 16 5 C 0.19 3.57 7.77 -156.37 -1.22 2.35 16 6 C 0.15 2.83 6.13 -4.98 -0.03 2.80 16 7 N -0.68 -14.98 6.19 -109.22 -0.68 -15.66 16 8 C 0.22 5.39 2.33 -68.86 -0.16 5.23 16 9 H 0.04 1.00 7.70 -51.93 -0.40 0.60 16 10 C -0.49 -13.27 7.25 -34.44 -0.25 -13.52 16 11 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 12 C 0.06 1.57 5.28 -17.82 -0.09 1.47 16 13 N -0.90 -25.17 11.38 55.43 0.63 -24.54 16 14 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 C -0.15 -3.45 5.51 -26.74 -0.15 -3.60 16 19 C -0.13 -2.85 9.40 37.15 0.35 -2.50 16 20 N -0.39 -6.89 12.16 30.90 0.38 -6.51 16 21 O 0.07 1.05 11.31 18.11 0.20 1.25 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.10 1.88 7.93 -51.93 -0.41 1.47 16 28 H 0.05 0.89 7.54 -51.93 -0.39 0.50 16 29 H 0.33 7.21 6.69 -39.29 -0.26 6.94 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.10 2.51 6.23 -51.93 -0.32 2.19 16 32 H 0.01 0.25 7.50 -51.93 -0.39 -0.14 16 33 H 0.03 0.54 6.63 -51.93 -0.34 0.19 16 34 H 0.07 1.67 6.86 -51.93 -0.36 1.31 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 293.40 15.07 4.42 4.42 Total: -1.00 -30.09 293.40 -6.60 -36.70 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.96 Total: 2.84 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.47 Total: -6.83 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.22 Total: -54.79 kcal Atomic # 8 Polarization: 1.05 SS G_CDS: 0.20 Total: 1.25 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.09 -6.60 -36.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575812222.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.739 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds