Wall clock time and date at job start Sun Mar 29 2020 22:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46998 * 2 1 4 4 N 1.31130 * 126.54839 * 89.71456 * 3 2 1 5 5 C 1.34494 * 105.61514 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.28872 * 180.13132 * 5 4 3 7 7 N 1.46900 * 109.46688 * 270.27799 * 6 5 4 8 8 C 1.46899 * 110.99770 * 174.83817 * 7 6 5 9 9 H 1.08997 * 109.47380 * 325.90208 * 8 7 6 10 10 C 1.50705 * 109.47211 * 205.90183 * 8 7 6 11 11 H 1.08003 * 119.99828 * 0.02562 * 10 8 7 12 12 C 1.37877 * 120.00354 * 179.97438 * 10 8 7 13 13 N 1.31518 * 119.99634 * 0.02562 * 12 10 8 14 14 Si 1.86789 * 120.00348 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47065 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47312 * 119.99818 * 14 12 10 17 17 H 1.48503 * 109.47619 * 240.00175 * 14 12 10 18 18 C 1.52996 * 109.47168 * 85.90618 * 8 7 6 19 19 C 1.52993 * 109.47571 * 65.15653 * 18 8 7 20 20 N 1.29945 * 107.42367 * 0.34599 * 5 4 3 21 21 O 1.21306 * 110.25189 * 359.77929 * 20 5 4 22 22 H 1.09004 * 109.47611 * 59.99722 * 1 2 3 23 23 H 1.09000 * 109.47158 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47595 * 299.99780 * 1 2 3 25 25 H 1.09000 * 109.47138 * 240.00413 * 2 1 3 26 26 H 1.08998 * 109.47196 * 120.00161 * 2 1 3 27 27 H 1.08996 * 109.47110 * 30.27920 * 6 5 4 28 28 H 1.09001 * 109.47340 * 150.28237 * 6 5 4 29 29 H 1.00897 * 111.00293 * 298.79463 * 7 6 5 30 30 H 0.96999 * 119.99826 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.47511 * 185.16360 * 18 8 7 32 32 H 1.09001 * 109.46956 * 305.15369 * 18 8 7 33 33 H 1.09000 * 109.47217 * 294.85189 * 19 18 8 34 34 H 1.09001 * 109.47102 * 54.84987 * 19 18 8 35 35 H 1.09000 * 109.47332 * 174.85007 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2876 2.1588 1.0534 5 6 2.7091 3.3422 0.5729 6 6 3.1304 4.5371 1.3888 7 7 1.9608 5.3851 1.6552 8 6 2.3091 6.4959 2.5511 9 1 3.0658 6.1653 3.2626 10 6 1.0790 6.9436 3.2978 11 1 0.1332 6.4518 3.1245 12 6 1.1612 7.9804 4.2031 13 7 2.3130 8.5789 4.4145 14 14 -0.3633 8.5348 5.1291 15 1 -1.5234 7.7057 4.7143 16 1 -0.1403 8.3780 6.5888 17 1 -0.6384 9.9612 4.8209 18 6 2.8584 7.6624 1.7275 19 6 1.7554 8.2098 0.8196 20 7 2.6819 3.2674 -0.7241 21 8 2.2960 2.1718 -1.0736 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.5575 4.1999 2.3332 28 1 3.8759 5.1095 0.8367 29 1 1.5584 5.7266 0.7953 30 1 2.3708 9.3085 5.0511 31 1 3.2019 8.4505 2.3977 32 1 3.6924 7.3154 1.1175 33 1 1.4759 7.4506 0.0892 34 1 0.8857 8.4720 1.4220 35 1 2.1187 9.0969 0.3007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575812222.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:17 Heat of formation + Delta-G solvation = 35.445201 kcal Electronic energy + Delta-G solvation = -17005.144237 eV Core-core repulsion = 14233.345566 eV Total energy + Delta-G solvation = -2771.798671 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.63106 -38.68241 -36.99574 -35.72955 -34.32098 -32.62803 -31.71846 -28.97161 -26.95764 -25.79394 -25.16834 -24.10433 -21.99428 -21.25579 -19.18700 -18.72992 -18.05023 -16.83696 -16.57755 -16.34754 -15.64668 -15.22104 -14.85134 -14.56497 -14.31537 -13.93268 -13.82841 -13.63150 -13.28774 -12.85518 -12.70036 -12.64305 -12.51356 -12.42727 -12.07855 -11.97830 -11.93968 -11.75122 -11.49329 -11.07040 -10.91536 -10.45945 -9.15330 -8.08263 -6.16447 0.17209 1.17269 1.41407 1.44253 1.55530 1.92331 2.44300 2.64080 3.01615 3.20976 3.68606 3.88764 4.21176 4.24881 4.29973 4.42590 4.48762 4.56003 4.59452 4.70100 4.86465 4.98081 5.00627 5.04959 5.14974 5.25680 5.35314 5.36765 5.65132 5.69538 5.75555 6.23688 6.53870 6.61052 6.92056 7.19858 7.50522 8.97725 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031273 B = 0.005434 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.137400 B = 5151.078176 C = 5650.251798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 C 0.183 3.817 4 N -0.498 5.498 5 C 0.175 3.825 6 C 0.151 3.849 7 N -0.680 5.680 8 C 0.223 3.777 9 H 0.008 0.992 10 C -0.501 4.501 11 H 0.049 0.951 12 C 0.017 3.983 13 N -0.918 5.918 14 Si 0.953 3.047 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.280 1.280 18 C -0.140 4.140 19 C -0.122 4.122 20 N -0.403 5.403 21 O 0.079 5.921 22 H 0.059 0.941 23 H 0.106 0.894 24 H 0.042 0.958 25 H 0.136 0.864 26 H 0.122 0.878 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.332 0.668 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 -15.363 -10.011 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.063 4.063 3 C -0.037 4.037 4 N -0.232 5.232 5 C -0.098 4.098 6 C 0.020 3.980 7 N -0.312 5.312 8 C 0.115 3.885 9 H 0.026 0.974 10 C -0.540 4.540 11 H 0.067 0.933 12 C -0.182 4.182 13 N -0.558 5.558 14 Si 0.780 3.220 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.205 1.205 18 C -0.179 4.179 19 C -0.180 4.180 20 N -0.111 5.111 21 O 0.019 5.981 22 H 0.078 0.922 23 H 0.125 0.875 24 H 0.061 0.939 25 H 0.154 0.846 26 H 0.140 0.860 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.951 -14.857 -9.461 17.639 hybrid contribution -0.024 1.199 0.147 1.209 sum -0.976 -13.658 -9.314 16.560 Atomic orbital electron populations 1.21807 0.92113 1.04771 1.02103 1.20572 0.97330 0.80332 1.08078 1.29961 0.94520 0.99606 0.79633 1.71894 1.18351 1.02801 1.30128 1.25830 0.99794 0.96151 0.88040 1.20051 0.92996 0.87694 0.97229 1.60661 1.27724 1.24019 1.18836 1.19039 0.94935 0.85066 0.89451 0.97422 1.21212 0.95245 1.15594 1.21934 0.93283 1.25560 0.98551 0.96478 0.97588 1.70001 1.25384 1.24398 1.36037 0.85571 0.80183 0.77923 0.78333 1.19689 1.20825 1.20539 1.21975 0.96557 1.01600 0.97788 1.21488 0.99402 0.99043 0.98024 1.74599 1.19670 1.01061 1.15780 1.85214 1.59731 1.17027 1.36100 0.92188 0.87536 0.93859 0.84592 0.86016 0.89084 0.92765 0.84956 0.93019 0.91293 0.95451 0.93967 0.93339 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.89 71.98 0.71 -1.12 16 2 C -0.02 -0.31 6.56 29.85 0.20 -0.11 16 3 C 0.18 4.59 7.77 88.38 0.69 5.27 16 4 N -0.50 -16.85 11.55 -303.18 -3.50 -20.35 16 5 C 0.17 6.42 7.77 138.46 1.08 7.50 16 6 C 0.15 5.96 6.13 85.56 0.52 6.48 16 7 N -0.68 -30.52 6.19 -499.47 -3.09 -33.62 16 8 C 0.22 11.32 2.33 44.17 0.10 11.42 16 9 H 0.01 0.44 7.70 -2.39 -0.02 0.42 16 10 C -0.50 -27.74 7.25 25.60 0.19 -27.55 16 11 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 12 C 0.02 0.92 5.28 84.65 0.45 1.37 16 13 N -0.92 -52.23 11.38 21.45 0.24 -51.99 16 14 Si 0.95 44.15 29.54 68.60 2.03 46.17 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 18 C -0.14 -6.60 5.51 30.59 0.17 -6.43 16 19 C -0.12 -5.24 9.40 71.98 0.68 -4.56 16 20 N -0.40 -13.88 12.16 -60.31 -0.73 -14.61 16 21 O 0.08 2.23 11.31 74.86 0.85 3.08 16 22 H 0.06 0.77 8.14 -2.38 -0.02 0.76 16 23 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 27 H 0.09 3.64 7.93 -2.39 -0.02 3.62 16 28 H 0.05 2.04 7.54 -2.39 -0.02 2.02 16 29 H 0.33 14.49 6.69 -89.70 -0.60 13.89 16 30 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.07 3.66 6.23 -2.39 -0.01 3.64 16 32 H 0.03 1.18 7.50 -2.39 -0.02 1.16 16 33 H 0.04 1.65 6.63 -2.39 -0.02 1.63 16 34 H 0.05 2.28 6.86 -2.39 -0.02 2.26 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -65.28 293.40 1.05 -64.23 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.49 Total: 14.82 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 4.78 Total: -7.74 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -7.09 Total: -120.56 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.85 Total: 3.08 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -65.28 1.05 -64.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575812222.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.672 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds