Wall clock time and date at job start Sun Mar 29 2020 22:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 120.00108 * 2 1 4 4 H 1.48499 * 109.46802 * 239.99949 * 3 2 1 5 5 H 1.48500 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47203 * 119.99762 * 3 2 1 7 7 C 1.37882 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99537 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46956 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47301 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00344 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47647 * 180.02562 * 12 11 10 14 14 H 1.09004 * 109.47256 * 59.99776 * 13 12 11 15 15 O 1.42903 * 109.47063 * 299.99964 * 13 12 11 16 16 C 1.53002 * 109.47564 * 179.97438 * 13 12 11 17 17 N 1.46500 * 109.47148 * 184.99803 * 16 13 12 18 18 C 1.34946 * 126.03644 * 124.95038 * 17 16 13 19 19 C 1.35316 * 107.74870 * 180.02562 * 18 17 16 20 20 C 1.39875 * 107.91722 * 0.02562 * 19 18 17 21 21 N 1.30829 * 108.20298 * 0.02562 * 20 19 18 22 22 H 0.96995 * 119.99470 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47400 * 59.99917 * 9 7 2 24 24 H 1.09001 * 109.47435 * 299.99832 * 9 7 2 25 25 H 1.09003 * 109.47345 * 59.99858 * 10 9 7 26 26 H 1.08997 * 109.47657 * 299.99980 * 10 9 7 27 27 H 1.00900 * 110.99888 * 56.04838 * 11 10 9 28 28 H 1.09004 * 109.46975 * 59.99785 * 12 11 10 29 29 H 1.09005 * 109.47318 * 300.00313 * 12 11 10 30 30 H 0.96700 * 113.99890 * 299.99883 * 15 13 12 31 31 H 1.08996 * 109.46833 * 64.99795 * 16 13 12 32 32 H 1.08993 * 109.46978 * 305.00271 * 16 13 12 33 33 H 1.07999 * 126.12479 * 0.04451 * 18 17 16 34 34 H 1.07999 * 126.03957 * 180.26092 * 19 18 17 35 35 H 1.08004 * 125.89587 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4351 -6.0759 0.0018 13 6 1.6352 -7.3800 0.0018 14 1 1.0075 -7.4213 -0.8885 15 8 0.8114 -7.4335 1.1683 16 6 2.5980 -8.5691 0.0018 17 7 1.8359 -9.8145 -0.1186 18 6 2.0158 -10.7678 -1.0566 19 6 1.1164 -11.7514 -0.8229 20 6 0.3606 -11.3865 0.2961 21 7 0.7905 -10.2252 0.7185 22 1 -0.4849 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6044 -0.8894 27 1 0.8741 -4.9846 -0.7800 28 1 3.0631 -6.0345 0.8918 29 1 3.0632 -6.0354 -0.8882 30 1 1.3043 -7.4011 1.9996 31 1 3.1641 -8.5781 0.9331 32 1 3.2847 -8.4805 -0.8399 33 1 2.7468 -10.7491 -1.8514 34 1 1.0047 -12.6597 -1.3965 35 1 -0.4395 -11.9636 0.7355 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578524314.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:53 Heat of formation + Delta-G solvation = -3.908935 kcal Electronic energy + Delta-G solvation = -16280.761611 eV Core-core repulsion = 13507.256417 eV Total energy + Delta-G solvation = -2773.505195 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.94979 -39.06613 -36.84126 -34.90967 -34.10587 -31.94234 -30.90974 -29.63160 -26.88175 -25.04584 -22.91024 -22.40589 -21.83565 -21.49725 -18.61007 -18.27295 -17.50385 -16.73494 -16.66807 -16.32117 -15.82145 -15.26856 -15.02834 -14.83351 -14.43745 -14.22777 -13.82191 -13.58185 -13.53146 -13.00351 -12.87598 -12.77252 -12.46835 -12.06005 -11.95933 -11.55295 -11.41525 -11.34624 -10.95667 -10.57390 -10.23414 -9.42516 -9.25155 -8.21206 -6.33703 1.08136 1.39776 1.43445 1.51469 1.68267 2.03430 2.39740 3.06928 3.12065 3.58446 3.73524 3.84190 4.03751 4.15737 4.18978 4.35015 4.41577 4.51348 4.59995 4.68767 4.79199 4.94478 5.01572 5.06333 5.20673 5.42719 5.64741 5.76668 5.81927 6.10885 6.20386 6.27745 6.47062 6.84261 6.88154 6.92437 7.36030 8.90950 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.076186 B = 0.003336 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.434955 B = 8391.210798 C = 8556.321202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.030 3.970 10 C 0.086 3.914 11 N -0.695 5.695 12 C 0.033 3.967 13 C 0.111 3.889 14 H 0.080 0.920 15 O -0.553 6.553 16 C 0.102 3.898 17 N -0.377 5.377 18 C 0.046 3.954 19 C -0.288 4.288 20 C 0.019 3.981 21 N -0.316 5.316 22 H 0.264 0.736 23 H -0.012 1.012 24 H -0.010 1.010 25 H 0.061 0.939 26 H 0.023 0.977 27 H 0.335 0.665 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.379 0.621 31 H 0.100 0.900 32 H 0.138 0.862 33 H 0.207 0.793 34 H 0.166 0.834 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.357 -22.176 -2.961 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.082 0.918 9 C -0.007 4.007 10 C -0.043 4.043 11 N -0.325 5.325 12 C -0.097 4.097 13 C 0.050 3.950 14 H 0.098 0.902 15 O -0.358 6.358 16 C -0.019 4.019 17 N -0.160 5.160 18 C -0.100 4.100 19 C -0.318 4.318 20 C -0.167 4.167 21 N -0.138 5.138 22 H 0.073 0.927 23 H 0.006 0.994 24 H 0.008 0.992 25 H 0.079 0.921 26 H 0.041 0.959 27 H 0.153 0.847 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.227 0.773 31 H 0.118 0.882 32 H 0.156 0.844 33 H 0.224 0.776 34 H 0.183 0.817 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 7.612 -21.051 -1.835 22.460 hybrid contribution 0.711 0.419 -1.093 1.370 sum 8.323 -20.631 -2.928 22.439 Atomic orbital electron populations 1.70122 1.07988 1.27923 1.51341 1.26042 0.95769 1.03604 0.94577 0.85435 0.78189 0.77724 0.79293 1.18924 1.20935 1.19034 1.21607 0.93641 0.92168 1.51058 0.91800 1.18922 0.94395 0.92617 0.94797 1.21777 0.95413 0.88104 0.98981 1.60340 1.20130 1.01733 1.50345 1.22633 0.94600 0.90014 1.02456 1.22029 0.91826 0.91360 0.89765 0.90163 1.86679 1.36965 1.96344 1.15834 1.22600 0.92924 0.79786 1.06617 1.48817 1.27325 1.17091 1.22787 1.23244 1.01649 0.89572 0.95531 1.21861 1.02400 1.04113 1.03401 1.24423 1.01123 0.93951 0.97237 1.77527 1.03624 1.14915 1.17722 0.92735 0.99367 0.99160 0.92090 0.95865 0.84747 0.89683 0.92778 0.77308 0.88213 0.84431 0.77583 0.81674 0.78730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -31.40 9.11 25.60 0.23 -31.16 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.64 5.23 29.85 0.16 1.79 16 10 C 0.09 3.55 5.62 86.30 0.49 4.03 16 11 N -0.69 -24.25 6.37 -513.90 -3.27 -27.53 16 12 C 0.03 0.78 5.35 86.30 0.46 1.24 16 13 C 0.11 2.47 3.39 30.59 0.10 2.57 16 14 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 15 O -0.55 -15.84 12.24 -148.98 -1.82 -17.67 16 16 C 0.10 1.58 6.18 86.38 0.53 2.11 16 17 N -0.38 -7.74 3.68 -348.07 -1.28 -9.02 16 18 C 0.05 0.72 11.45 83.54 0.96 1.68 16 19 C -0.29 -4.95 10.80 21.99 0.24 -4.71 16 20 C 0.02 0.40 12.03 85.24 1.03 1.42 16 21 N -0.32 -8.35 11.56 -57.02 -0.66 -9.01 16 22 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 23 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.34 11.92 8.73 -89.69 -0.78 11.13 16 28 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.38 8.84 9.05 -74.06 -0.67 8.17 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.14 1.13 8.07 -2.39 -0.02 1.11 16 33 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -75.45 303.82 -0.44 -75.89 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.37 Total: 19.43 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 4.66 Total: -20.68 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -4.93 Total: -103.35 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -1.82 Total: -17.67 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -75.45 -0.44 -75.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578524314.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.976 kcal (2) G-P(sol) polarization free energy of solvation -75.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds