Wall clock time and date at job start Sun Mar 29 2020 22:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99967 * 2 1 4 4 C 1.47206 * 109.46934 * 179.97438 * 3 2 1 5 5 C 3.40055 * 161.18934 * 0.02562 * 2 1 3 6 6 C 4.78780 * 168.18629 * 0.02562 * 2 1 3 7 7 N 1.46905 * 109.47036 * 229.74074 * 6 5 4 8 8 C 1.47908 * 111.00068 * 69.87089 * 7 6 5 9 9 C 1.53990 * 107.05890 * 214.15762 * 8 7 6 10 10 C 1.54596 * 105.14026 * 1.22730 * 9 8 7 11 11 O 1.42900 * 110.72329 * 263.42001 * 10 9 8 12 12 C 1.50698 * 110.72634 * 140.31607 * 10 9 8 13 13 H 1.08000 * 120.00212 * 241.45715 * 12 10 9 14 14 C 1.37881 * 120.00128 * 61.45224 * 12 10 9 15 15 N 1.31521 * 119.99787 * 0.02562 * 14 12 10 16 16 Si 1.86791 * 120.00197 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46931 * 90.00061 * 16 14 12 18 18 H 1.48501 * 109.47388 * 209.99617 * 16 14 12 19 19 H 1.48502 * 109.47494 * 330.00288 * 16 14 12 20 20 C 1.48537 * 110.99866 * 312.47664 * 7 6 5 21 21 H 1.08995 * 109.47308 * 300.00295 * 1 2 3 22 22 H 1.09006 * 109.46986 * 60.00726 * 1 2 3 23 23 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47405 * 59.99323 * 3 2 1 25 25 H 1.09000 * 109.47075 * 299.99499 * 3 2 1 26 26 H 1.08996 * 109.47170 * 349.73467 * 6 5 4 27 27 H 1.08992 * 109.47449 * 109.74243 * 6 5 4 28 28 H 1.09003 * 109.91700 * 333.51111 * 8 7 6 29 29 H 1.08999 * 109.91128 * 94.80268 * 8 7 6 30 30 H 1.08999 * 110.30981 * 120.14123 * 9 8 7 31 31 H 1.09000 * 110.31026 * 242.21211 * 9 8 7 32 32 H 0.96695 * 114.00396 * 298.55008 * 11 10 9 33 33 H 0.96992 * 120.00080 * 180.02562 * 15 14 12 34 34 H 1.08996 * 110.66748 * 278.15589 * 20 7 6 35 35 H 1.09000 * 110.66605 * 41.28826 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4776 1.1892 0.0006 5 6 4.6479 1.0965 0.0005 6 6 6.1154 0.9802 0.0004 7 7 6.6742 1.8338 1.0574 8 6 6.3592 1.2929 2.3975 9 6 6.1600 2.4978 3.3355 10 6 6.3497 3.7430 2.4392 11 8 7.6850 4.2415 2.5422 12 6 5.3533 4.8152 2.7979 13 1 4.6359 5.1529 2.0647 14 6 5.3574 5.3650 4.0624 15 7 6.2313 4.9541 4.9552 16 14 4.1219 6.6934 4.5073 17 1 2.8937 6.0636 5.0550 18 1 4.7121 7.5968 5.5275 19 1 3.7775 7.4760 3.2930 20 6 6.0742 3.1920 1.0176 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.6885 1.8464 0.8899 25 1 1.6886 1.8463 -0.8900 26 1 6.3977 -0.0565 0.1836 27 1 6.5050 1.2975 -0.9667 28 1 5.4448 0.7013 2.3536 29 1 7.1859 0.6780 2.7533 30 1 5.1555 2.4858 3.7587 31 1 6.9051 2.4853 4.1310 32 1 7.9305 4.5276 3.4326 33 1 6.2340 5.3406 5.8448 34 1 6.5656 3.8078 0.2644 35 1 5.0022 3.1336 0.8288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:18 Heat of formation + Delta-G solvation = -36.100998 kcal Electronic energy + Delta-G solvation = -17178.925646 eV Core-core repulsion = 14371.731748 eV Total energy + Delta-G solvation = -2807.193898 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.56669 -37.97119 -35.17661 -32.91240 -32.09217 -30.32188 -28.02143 -27.92044 -26.12852 -25.12786 -23.65943 -20.24800 -19.52837 -17.25315 -16.99997 -16.49899 -15.99664 -15.41194 -14.95657 -14.68555 -14.53090 -13.66944 -13.54236 -13.00951 -12.83606 -12.61767 -12.27253 -11.67679 -11.63019 -11.32096 -11.24337 -10.91085 -10.64738 -10.45301 -10.38696 -10.18246 -9.77905 -9.75369 -9.38765 -9.12513 -8.57685 -8.09767 -7.87038 -6.19115 -4.26994 2.61118 2.89818 3.21496 3.29122 3.32773 3.92695 4.30161 4.52426 4.84070 5.08927 5.09881 5.17266 5.27942 5.43837 5.48793 5.58686 5.73831 5.84991 5.93913 6.03944 6.09477 6.23703 6.51447 6.62833 6.90645 6.98775 7.07972 7.39801 7.53136 7.55291 7.64503 7.82027 7.83699 8.20885 8.75138 9.41501 9.58129 10.88095 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.019201 B = 0.007408 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.893828 B = 3778.850335 C = 4835.449106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.181 3.819 4 C -0.200 4.200 5 C -0.162 4.162 6 C 0.148 3.852 7 N -0.503 5.503 8 C 0.031 3.969 9 C -0.128 4.128 10 C 0.256 3.744 11 O -0.580 6.580 12 C -0.536 4.536 13 H 0.059 0.941 14 C 0.071 3.929 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.048 3.952 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.033 0.967 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.377 0.623 33 H 0.266 0.734 34 H 0.072 0.928 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.042 -7.324 -6.841 12.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.106 3.894 4 C -0.201 4.201 5 C -0.164 4.164 6 C 0.020 3.980 7 N -0.225 5.225 8 C -0.096 4.096 9 C -0.167 4.167 10 C 0.216 3.784 11 O -0.388 6.388 12 C -0.574 4.574 13 H 0.077 0.923 14 C -0.131 4.131 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.079 4.079 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.226 0.774 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.268 -7.586 -7.376 12.298 hybrid contribution -1.920 0.972 1.108 2.420 sum -8.187 -6.615 -6.268 12.250 Atomic orbital electron populations 1.22763 0.80580 1.02902 1.00262 1.87948 1.19861 1.27467 1.95529 1.19026 0.84068 0.84884 1.01437 1.21667 0.92859 1.03943 1.01674 1.23748 0.94927 0.96937 1.00822 1.19772 0.80923 0.99253 0.98028 1.65159 1.52294 1.02861 1.02143 1.22981 0.98333 0.98463 0.89865 1.22912 1.01560 0.94264 0.97915 1.19327 0.81478 0.89594 0.87995 1.86135 1.31891 1.84956 1.35820 1.21590 1.16811 1.21395 0.97641 0.92259 1.24995 0.95632 0.96468 0.96046 1.69734 1.35676 1.42756 1.05195 0.86504 0.81097 0.81571 0.78293 1.20640 1.20988 1.19782 1.23320 0.96771 0.87886 0.99920 0.93691 0.93880 0.89482 0.90648 0.91089 0.88870 0.88615 0.94820 0.91581 0.92202 0.91446 0.77379 0.92379 0.90916 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.48 10.66 -35.23 -0.38 -5.86 16 3 C 0.18 2.54 6.41 34.37 0.22 2.76 16 4 C -0.20 -3.48 13.49 -37.12 -0.50 -3.98 16 5 C -0.16 -2.89 10.32 -37.12 -0.38 -3.27 16 6 C 0.15 2.44 6.00 -6.61 -0.04 2.40 16 7 N -0.50 -10.15 5.54 -233.94 -1.30 -11.45 16 8 C 0.03 0.64 6.45 -2.75 -0.02 0.62 16 9 C -0.13 -3.05 5.26 -25.38 -0.13 -3.19 16 10 C 0.26 6.55 0.95 -89.91 -0.09 6.46 16 11 O -0.58 -15.56 13.10 -35.23 -0.46 -16.02 16 12 C -0.54 -14.61 8.14 -34.44 -0.28 -14.89 16 13 H 0.06 1.61 7.78 -52.49 -0.41 1.20 16 14 C 0.07 1.90 5.28 -17.82 -0.09 1.80 16 15 N -0.89 -24.16 11.00 55.43 0.61 -23.55 16 16 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.05 1.09 5.45 -1.90 -0.01 1.08 16 21 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 23 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 27 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.03 0.67 7.01 -51.93 -0.36 0.30 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.50 7.84 -51.93 -0.41 1.10 16 31 H 0.07 1.67 7.99 -51.93 -0.41 1.26 16 32 H 0.38 10.14 7.46 45.56 0.34 10.48 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.05 1.22 5.99 -51.93 -0.31 0.91 16 LS Contribution 295.50 15.07 4.45 4.45 Total: -1.00 -29.83 295.50 -6.80 -36.63 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.50 Total: 8.80 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -0.21 Total: -8.78 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.69 Total: -34.99 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.84 Total: -21.88 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.83 -6.80 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.532 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds