Wall clock time and date at job start Sun Mar 29 2020 22:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99967 * 2 1 4 4 C 1.47206 * 109.46934 * 179.97438 * 3 2 1 5 5 C 3.40055 * 161.18934 * 0.02562 * 2 1 3 6 6 C 4.78780 * 168.18629 * 0.02562 * 2 1 3 7 7 N 1.46905 * 109.47036 * 229.74074 * 6 5 4 8 8 C 1.47908 * 111.00068 * 69.87089 * 7 6 5 9 9 C 1.53990 * 107.05890 * 214.15762 * 8 7 6 10 10 C 1.54596 * 105.14026 * 1.22730 * 9 8 7 11 11 O 1.42900 * 110.72329 * 263.42001 * 10 9 8 12 12 C 1.50698 * 110.72634 * 140.31607 * 10 9 8 13 13 H 1.08000 * 120.00212 * 241.45715 * 12 10 9 14 14 C 1.37881 * 120.00128 * 61.45224 * 12 10 9 15 15 N 1.31521 * 119.99787 * 0.02562 * 14 12 10 16 16 Si 1.86791 * 120.00197 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46931 * 90.00061 * 16 14 12 18 18 H 1.48501 * 109.47388 * 209.99617 * 16 14 12 19 19 H 1.48502 * 109.47494 * 330.00288 * 16 14 12 20 20 C 1.48537 * 110.99866 * 312.47664 * 7 6 5 21 21 H 1.08995 * 109.47308 * 300.00295 * 1 2 3 22 22 H 1.09006 * 109.46986 * 60.00726 * 1 2 3 23 23 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47405 * 59.99323 * 3 2 1 25 25 H 1.09000 * 109.47075 * 299.99499 * 3 2 1 26 26 H 1.08996 * 109.47170 * 349.73467 * 6 5 4 27 27 H 1.08992 * 109.47449 * 109.74243 * 6 5 4 28 28 H 1.09003 * 109.91700 * 333.51111 * 8 7 6 29 29 H 1.08999 * 109.91128 * 94.80268 * 8 7 6 30 30 H 1.08999 * 110.30981 * 120.14123 * 9 8 7 31 31 H 1.09000 * 110.31026 * 242.21211 * 9 8 7 32 32 H 0.96695 * 114.00396 * 298.55008 * 11 10 9 33 33 H 0.96992 * 120.00080 * 180.02562 * 15 14 12 34 34 H 1.08996 * 110.66748 * 278.15589 * 20 7 6 35 35 H 1.09000 * 110.66605 * 41.28826 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4776 1.1892 0.0006 5 6 4.6479 1.0965 0.0005 6 6 6.1154 0.9802 0.0004 7 7 6.6742 1.8338 1.0574 8 6 6.3592 1.2929 2.3975 9 6 6.1600 2.4978 3.3355 10 6 6.3497 3.7430 2.4392 11 8 7.6850 4.2415 2.5422 12 6 5.3533 4.8152 2.7979 13 1 4.6359 5.1529 2.0647 14 6 5.3574 5.3650 4.0624 15 7 6.2313 4.9541 4.9552 16 14 4.1219 6.6934 4.5073 17 1 2.8937 6.0636 5.0550 18 1 4.7121 7.5968 5.5275 19 1 3.7775 7.4760 3.2930 20 6 6.0742 3.1920 1.0176 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.6885 1.8464 0.8899 25 1 1.6886 1.8463 -0.8900 26 1 6.3977 -0.0565 0.1836 27 1 6.5050 1.2975 -0.9667 28 1 5.4448 0.7013 2.3536 29 1 7.1859 0.6780 2.7533 30 1 5.1555 2.4858 3.7587 31 1 6.9051 2.4853 4.1310 32 1 7.9305 4.5276 3.4326 33 1 6.2340 5.3406 5.8448 34 1 6.5656 3.8078 0.2644 35 1 5.0022 3.1336 0.8288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:17 Heat of formation + Delta-G solvation = -58.868185 kcal Electronic energy + Delta-G solvation = -17179.912905 eV Core-core repulsion = 14371.731748 eV Total energy + Delta-G solvation = -2808.181158 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.27854 -38.96501 -36.98550 -34.34474 -34.16863 -31.90305 -29.85824 -29.13556 -27.46435 -26.48528 -25.28259 -21.93486 -21.45599 -19.06298 -18.44711 -17.46397 -17.06357 -16.96260 -16.85917 -16.28777 -16.09549 -15.43559 -15.03775 -14.42349 -14.23042 -13.87291 -13.83028 -13.41357 -13.21755 -13.03185 -12.72560 -12.51711 -12.43838 -12.33709 -12.22024 -11.70261 -11.33028 -11.14979 -10.97989 -10.61199 -10.51546 -10.11383 -9.51528 -8.22626 -6.38439 1.37190 1.38011 1.40509 1.50152 1.58048 2.36908 2.83881 3.01526 3.15894 3.55063 3.92895 4.06469 4.14981 4.19515 4.35419 4.39043 4.50252 4.55229 4.57733 4.64990 4.72274 4.75900 4.83233 4.86188 5.05942 5.20197 5.46796 5.54385 5.70705 5.84935 6.06731 6.08241 6.22088 6.51417 6.66751 7.33104 7.47167 8.83176 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.019201 B = 0.007408 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.893828 B = 3778.850335 C = 4835.449106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.177 3.823 4 C -0.210 4.210 5 C -0.189 4.189 6 C 0.148 3.852 7 N -0.506 5.506 8 C 0.040 3.960 9 C -0.119 4.119 10 C 0.239 3.761 11 O -0.588 6.588 12 C -0.562 4.562 13 H 0.052 0.948 14 C 0.030 3.970 15 N -0.910 5.910 16 Si 0.958 3.042 17 H -0.274 1.274 18 H -0.279 1.279 19 H -0.272 1.272 20 C 0.058 3.942 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.372 0.628 33 H 0.269 0.731 34 H 0.068 0.932 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.045 -7.772 -7.465 13.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.335 6.335 3 C 0.102 3.898 4 C -0.212 4.212 5 C -0.191 4.191 6 C 0.021 3.979 7 N -0.228 5.228 8 C -0.087 4.087 9 C -0.158 4.158 10 C 0.199 3.801 11 O -0.396 6.396 12 C -0.601 4.601 13 H 0.070 0.930 14 C -0.171 4.171 15 N -0.550 5.550 16 Si 0.783 3.217 17 H -0.200 1.200 18 H -0.204 1.204 19 H -0.196 1.196 20 C -0.070 4.070 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.120 0.880 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.221 0.779 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.277 -8.051 -8.011 13.489 hybrid contribution -1.646 1.083 1.289 2.354 sum -8.923 -6.968 -6.723 13.167 Atomic orbital electron populations 1.23024 0.78270 1.04371 1.01500 1.87899 1.22400 1.27394 1.95771 1.19209 0.82456 0.85394 1.02725 1.22581 0.94239 1.03360 1.01011 1.24078 0.95623 0.97712 1.01686 1.19950 0.80370 0.99914 0.97642 1.65110 1.52619 1.02265 1.02810 1.22890 0.99430 0.97012 0.89411 1.22703 0.99654 0.95505 0.97939 1.19574 0.80502 0.89859 0.90138 1.86123 1.32777 1.85154 1.35500 1.21836 1.17523 1.22642 0.98073 0.93015 1.25694 0.97242 0.98276 0.95849 1.69817 1.36462 1.43326 1.05366 0.85560 0.79066 0.79058 0.77968 1.19993 1.20399 1.19647 1.23109 0.96644 0.89290 0.97914 0.92974 0.92092 0.87981 0.90336 0.88632 0.86349 0.86532 0.94143 0.89735 0.94286 0.93037 0.77949 0.92149 0.91347 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -11.06 10.66 -148.98 -1.59 -12.65 16 3 C 0.18 4.73 6.41 70.18 0.45 5.18 16 4 C -0.21 -7.09 13.49 31.13 0.42 -6.67 16 5 C -0.19 -6.48 10.32 31.13 0.32 -6.16 16 6 C 0.15 4.57 6.00 84.50 0.51 5.08 16 7 N -0.51 -19.75 5.54 -894.06 -4.95 -24.70 16 8 C 0.04 1.60 6.45 86.44 0.56 2.16 16 9 C -0.12 -5.75 5.26 31.47 0.17 -5.58 16 10 C 0.24 12.33 0.95 -10.33 -0.01 12.32 16 11 O -0.59 -31.91 13.10 -148.98 -1.95 -33.86 16 12 C -0.56 -30.98 8.14 25.60 0.21 -30.77 16 13 H 0.05 2.84 7.78 -2.91 -0.02 2.82 16 14 C 0.03 1.62 5.28 84.65 0.45 2.06 16 15 N -0.91 -49.50 11.00 21.45 0.24 -49.27 16 16 Si 0.96 42.48 29.54 68.60 2.03 44.50 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 C 0.06 2.61 5.45 86.65 0.47 3.08 16 21 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 23 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 25 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.12 3.05 8.08 -2.39 -0.02 3.03 16 27 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.04 1.55 7.01 -2.39 -0.02 1.54 16 29 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.04 1.99 7.84 -2.39 -0.02 1.97 16 31 H 0.05 2.59 7.99 -2.39 -0.02 2.57 16 32 H 0.37 20.44 7.46 -74.06 -0.55 19.89 16 33 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.05 2.29 5.99 -2.39 -0.01 2.28 16 Total: -1.00 -63.06 295.50 -0.91 -63.97 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.53 Total: 29.66 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 4.79 Total: -17.65 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -4.71 Total: -73.96 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -3.54 Total: -46.51 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -63.06 -0.91 -63.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.100 kcal (2) G-P(sol) polarization free energy of solvation -63.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds