Wall clock time and date at job start Sun Mar 29 2020 22:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 120.00135 * 2 1 4 4 H 1.07999 * 120.00251 * 202.35119 * 3 2 1 5 5 C 1.38813 * 119.99962 * 22.34353 * 3 2 1 6 6 N 1.31619 * 120.00287 * 11.34083 * 5 3 2 7 7 Si 1.86804 * 120.00028 * 191.34323 * 5 3 2 8 8 H 1.48499 * 109.47119 * 59.99794 * 7 5 3 9 9 H 1.48496 * 109.47463 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46693 * 300.00081 * 7 5 3 11 11 C 1.46493 * 119.99920 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47697 * 270.00124 * 11 2 1 13 13 N 1.33314 * 126.54901 * 89.97358 * 12 11 2 14 14 N 1.29004 * 107.35651 * 180.02562 * 13 12 11 15 15 N 1.28785 * 108.71983 * 359.97438 * 14 13 12 16 16 C 1.46503 * 125.44501 * 179.97438 * 15 14 13 17 17 C 1.53009 * 109.47110 * 0.02562 * 16 15 14 18 18 C 1.53002 * 109.47197 * 240.02874 * 16 15 14 19 19 C 1.53001 * 109.47092 * 120.02521 * 16 15 14 20 20 N 1.28881 * 109.10526 * 0.23031 * 15 14 13 21 21 H 1.09012 * 109.47072 * 274.22245 * 1 2 3 22 22 H 1.09003 * 109.47215 * 34.21386 * 1 2 3 23 23 H 1.08995 * 109.47326 * 154.22132 * 1 2 3 24 24 H 0.97001 * 120.00184 * 179.97438 * 6 5 3 25 25 H 1.09008 * 109.47141 * 149.99846 * 11 2 1 26 26 H 1.09002 * 109.47127 * 29.99990 * 11 2 1 27 27 H 1.09001 * 109.47246 * 299.99891 * 17 16 15 28 28 H 1.09002 * 109.46996 * 179.97438 * 17 16 15 29 29 H 1.09002 * 109.46835 * 59.99873 * 17 16 15 30 30 H 1.09002 * 109.47020 * 180.02562 * 18 16 15 31 31 H 1.09000 * 109.46804 * 299.99592 * 18 16 15 32 32 H 1.09001 * 109.47383 * 59.99972 * 18 16 15 33 33 H 1.09002 * 109.47194 * 300.00335 * 19 16 15 34 34 H 1.08997 * 109.46840 * 60.00187 * 19 16 15 35 35 H 1.08999 * 109.46881 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2210 -0.3557 5 6 1.5338 2.3429 0.4570 6 7 0.3841 2.2692 1.0934 7 14 2.3368 4.0048 0.1687 8 1 2.4918 4.2332 -1.2904 9 1 1.4852 5.0735 0.7498 10 1 3.6721 4.0285 0.8181 11 6 2.1974 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4215 13 7 1.6532 -2.4672 2.1704 14 7 2.2234 -2.6062 3.3192 15 7 3.3373 -1.9599 3.3087 16 6 4.2791 -1.8718 4.4275 17 6 3.7358 -2.6686 5.6154 18 6 4.4537 -0.4069 4.8330 19 6 5.6312 -2.4480 4.0024 20 7 3.4885 -1.3986 2.1584 21 1 -0.3634 0.0757 1.0250 22 1 -0.3634 0.8498 -0.5778 23 1 -0.3634 -0.9253 -0.4469 24 1 -0.0461 3.0777 1.4131 25 1 3.1499 -1.1386 -0.5134 26 1 1.6083 -2.0286 -0.5129 27 1 2.7726 -2.2581 5.9182 28 1 4.4368 -2.6034 6.4476 29 1 3.6114 -3.7122 5.3264 30 1 5.1548 -0.3413 5.6651 31 1 4.8408 0.1607 3.9868 32 1 3.4904 0.0036 5.1359 33 1 5.5068 -3.4916 3.7135 34 1 6.0182 -1.8804 3.1562 35 1 6.3320 -2.3821 4.8347 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593956674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:27 Heat of formation + Delta-G solvation = 145.753648 kcal Electronic energy + Delta-G solvation = -17707.072170 eV Core-core repulsion = 14972.349583 eV Total energy + Delta-G solvation = -2734.722587 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.46122 -37.39319 -35.60165 -32.59639 -32.20466 -30.67492 -27.71272 -27.54523 -26.65021 -25.79464 -23.85155 -22.26359 -20.49104 -20.03083 -16.85838 -16.62990 -16.38856 -14.96160 -14.36244 -14.15176 -13.86506 -13.56640 -13.36591 -13.02002 -12.75305 -12.49020 -12.37480 -11.88206 -11.78767 -11.51455 -11.43135 -11.20580 -10.88873 -10.83967 -10.68223 -10.38786 -10.10957 -10.05732 -9.97686 -9.91987 -9.21726 -8.57521 -6.87650 -5.74830 -3.22091 2.03880 2.47955 3.12793 3.38676 3.42829 3.44664 4.30721 4.49543 4.56643 4.66582 4.98060 5.28972 5.35930 5.38343 5.47411 5.51004 5.54291 5.61757 5.66904 5.68410 5.88271 6.05062 6.15489 6.40778 6.53003 6.67023 6.71837 6.84210 7.00029 7.41350 7.77086 7.83429 8.35459 9.19108 9.27592 9.80212 10.29064 11.29336 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.025577 B = 0.007893 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.474263 B = 3546.426595 C = 4108.123228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.580 5.580 3 C -0.255 4.255 4 H 0.073 0.927 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.908 3.092 8 H -0.281 1.281 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.233 3.767 12 C 0.167 3.833 13 N -0.293 5.293 14 N -0.087 5.087 15 N -0.145 5.145 16 C 0.182 3.818 17 C -0.149 4.149 18 C -0.158 4.158 19 C -0.154 4.154 20 N -0.304 5.304 21 H 0.028 0.972 22 H 0.049 0.951 23 H 0.004 0.996 24 H 0.254 0.746 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.892 -8.246 6.642 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.301 5.301 3 C -0.385 4.385 4 H 0.091 0.909 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.737 3.263 8 H -0.208 1.208 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.101 3.899 12 C -0.119 4.119 13 N -0.165 5.165 14 N -0.080 5.080 15 N -0.058 5.058 16 C 0.100 3.900 17 C -0.207 4.207 18 C -0.216 4.216 19 C -0.213 4.213 20 N -0.155 5.155 21 H 0.047 0.953 22 H 0.068 0.932 23 H 0.023 0.977 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.643 -8.370 7.280 14.063 hybrid contribution 0.384 1.353 -0.170 1.417 sum 9.028 -7.016 7.111 13.464 Atomic orbital electron populations 1.20872 0.81651 0.96053 0.99597 1.44215 1.02373 1.00110 1.83394 1.19245 0.98345 0.84801 1.36113 0.90882 1.25111 0.97605 0.98762 0.97957 1.70091 1.17698 1.27321 1.39720 0.86289 0.78500 0.83445 0.78034 1.20771 1.21650 1.20907 1.19532 0.97591 0.89045 0.83767 1.27956 0.86814 0.94362 1.02800 1.75725 1.24711 1.18485 0.97548 1.78718 0.96184 1.15465 1.17591 1.50363 1.14714 1.30158 1.10604 1.21101 0.87424 0.98819 0.82615 1.22030 1.02505 1.00720 0.95448 1.22197 1.03519 0.92804 1.03092 1.22172 0.94073 1.01695 1.03340 1.74649 1.26934 1.20313 0.93558 0.95310 0.93207 0.97744 0.93617 0.90850 0.90995 0.90821 0.89964 0.90951 0.89989 0.90269 0.91493 0.91786 0.90473 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.19 9.01 59.85 0.54 4.73 16 2 N -0.58 -15.07 2.91 -182.50 -0.53 -15.60 16 3 C -0.26 -7.11 9.67 -15.06 -0.15 -7.25 16 4 H 0.07 1.98 7.84 -52.49 -0.41 1.57 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.90 -26.98 10.58 55.49 0.59 -26.39 16 7 Si 0.91 22.11 29.57 -169.99 -5.03 17.09 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 C 0.23 5.12 6.33 -5.20 -0.03 5.08 16 12 C 0.17 3.78 7.95 -156.63 -1.25 2.54 16 13 N -0.29 -6.69 12.50 32.44 0.41 -6.28 16 14 N -0.09 -1.80 12.24 60.35 0.74 -1.06 16 15 N -0.14 -2.73 3.73 0.49 0.00 -2.73 16 16 C 0.18 2.46 1.30 -131.81 -0.17 2.29 16 17 C -0.15 -1.61 7.91 37.16 0.29 -1.32 16 18 C -0.16 -2.06 8.66 37.16 0.32 -1.74 16 19 C -0.15 -1.66 8.67 37.16 0.32 -1.34 16 20 N -0.30 -6.57 11.83 32.46 0.38 -6.18 16 21 H 0.03 0.82 7.42 -51.92 -0.39 0.43 16 22 H 0.05 1.34 7.19 -51.93 -0.37 0.97 16 23 H 0.00 0.09 7.84 -51.93 -0.41 -0.32 16 24 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.07 1.50 8.03 -51.92 -0.42 1.08 16 26 H 0.07 1.40 7.86 -51.93 -0.41 1.00 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 297.08 15.07 4.48 4.48 Total: -1.00 -33.21 297.08 -4.51 -37.72 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -5.34 Total: -4.05 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.21 Total: 3.02 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 1.59 Total: -58.25 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.21 -4.51 -37.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593956674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.476 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds