Wall clock time and date at job start Sun Mar 29 2020 22:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46858 * 2 1 4 4 H 1.08998 * 109.47309 * 56.35046 * 3 2 1 5 5 C 1.50699 * 109.46861 * 176.34569 * 3 2 1 6 6 H 1.08003 * 119.99708 * 120.00094 * 5 3 2 7 7 C 1.37871 * 120.00306 * 299.99952 * 5 3 2 8 8 N 1.31512 * 120.00438 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99804 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47594 * 90.00144 * 9 7 5 11 11 H 1.48505 * 109.47268 * 210.00062 * 9 7 5 12 12 H 1.48501 * 109.47051 * 329.99636 * 9 7 5 13 13 N 1.46899 * 109.47313 * 296.34532 * 3 2 1 14 14 C 1.46900 * 111.00143 * 149.94291 * 13 3 2 15 15 H 1.09000 * 109.46963 * 326.26801 * 14 13 3 16 16 C 1.53000 * 109.47327 * 86.26863 * 14 13 3 17 17 C 1.50704 * 109.46914 * 206.27196 * 14 13 3 18 18 N 1.31124 * 126.54953 * 134.99933 * 17 14 13 19 19 C 1.34497 * 105.61284 * 179.97438 * 18 17 14 20 20 C 1.50705 * 126.28648 * 179.97438 * 19 18 17 21 21 N 1.29947 * 107.42444 * 359.97438 * 19 18 17 22 22 O 1.21295 * 110.24737 * 359.97438 * 21 19 18 23 23 H 1.08991 * 109.47169 * 55.28954 * 1 2 3 24 24 H 1.08996 * 109.46960 * 175.29757 * 1 2 3 25 25 H 1.09007 * 109.46924 * 295.29159 * 1 2 3 26 26 H 1.08993 * 109.46598 * 240.00197 * 2 1 3 27 27 H 1.08996 * 109.47011 * 120.00028 * 2 1 3 28 28 H 0.97001 * 120.00221 * 179.97438 * 8 7 5 29 29 H 1.00898 * 110.99925 * 273.89971 * 13 3 2 30 30 H 1.08995 * 109.47189 * 180.02562 * 16 14 13 31 31 H 1.08997 * 109.46691 * 299.99969 * 16 14 13 32 32 H 1.09000 * 109.47149 * 60.00052 * 16 14 13 33 33 H 1.09004 * 109.46856 * 90.00473 * 20 19 18 34 34 H 1.08996 * 109.46936 * 209.99658 * 20 19 18 35 35 H 1.08992 * 109.47243 * 330.00381 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6242 1.9749 0.8554 5 6 3.5442 1.4435 0.0906 6 1 4.1322 1.8942 -0.6953 7 6 4.1699 0.8690 1.1766 8 7 5.4827 0.8694 1.2554 9 14 3.1529 0.0889 2.5355 10 1 2.9253 -1.3448 2.2226 11 1 3.8789 0.2046 3.8258 12 1 1.8461 0.7867 2.6385 13 7 1.6237 2.1091 -1.2411 14 6 1.4327 3.5497 -1.0265 15 1 1.0552 3.7199 -0.0182 16 6 2.7699 4.2728 -1.1993 17 6 0.4414 4.0800 -2.0301 18 7 -0.5583 4.8925 -1.7859 19 6 -1.1624 5.0897 -2.9713 20 6 -2.3726 5.9518 -3.2232 21 7 -0.5110 4.4002 -3.8595 22 8 0.4146 3.8135 -3.3394 23 1 -0.3633 0.5851 -0.8447 24 1 -0.3633 -1.0242 -0.0842 25 1 -0.3633 0.4391 0.9292 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 5.9228 0.4656 2.0197 29 1 2.2862 1.9387 -1.9828 30 1 2.6283 5.3417 -1.0396 31 1 3.4868 3.8892 -0.4733 32 1 3.1474 4.1026 -2.2075 33 1 -2.0527 6.9662 -3.4616 34 1 -2.9413 5.5444 -4.0590 35 1 -2.9988 5.9684 -2.3313 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594011615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:27 Heat of formation + Delta-G solvation = 62.726375 kcal Electronic energy + Delta-G solvation = -17485.452363 eV Core-core repulsion = 14714.836692 eV Total energy + Delta-G solvation = -2770.615671 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.27377 -37.41007 -35.79537 -34.13133 -32.13614 -31.71189 -29.10766 -28.68473 -26.72297 -24.21476 -23.04359 -22.54545 -20.47937 -20.02910 -17.81554 -17.23987 -16.78575 -15.51114 -15.25181 -14.32959 -13.94221 -13.59388 -13.46804 -13.17665 -12.97217 -12.75808 -12.59704 -12.13009 -11.86300 -11.83935 -11.58882 -11.19305 -11.07064 -10.96105 -10.76429 -10.68029 -10.44515 -9.86277 -9.70920 -9.45174 -9.28172 -8.66525 -7.72846 -6.21504 -4.23997 1.44248 2.44618 3.17256 3.21341 3.32703 3.33585 3.78242 4.21010 4.29666 4.91305 5.10302 5.20462 5.30206 5.37401 5.46758 5.56589 5.68217 5.94201 5.99269 6.01544 6.08488 6.18455 6.22152 6.28070 6.58061 6.65933 6.72823 6.87858 6.97137 7.15800 7.40095 7.74173 8.13057 8.33790 8.44232 8.79135 9.40783 10.90427 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036833 B = 0.006491 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.997905 B = 4312.814290 C = 4666.452942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C 0.187 3.813 4 H 0.036 0.964 5 C -0.550 4.550 6 H 0.080 0.920 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.675 5.675 14 C 0.180 3.820 15 H 0.117 0.883 16 C -0.180 4.180 17 C 0.222 3.778 18 N -0.497 5.497 19 C 0.159 3.841 20 C -0.058 4.058 21 N -0.398 5.398 22 O 0.081 5.919 23 H 0.061 0.939 24 H 0.034 0.966 25 H 0.038 0.962 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.265 0.735 29 H 0.348 0.652 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.634 6.258 -4.870 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C 0.079 3.921 4 H 0.054 0.946 5 C -0.589 4.589 6 H 0.098 0.902 7 C -0.127 4.127 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.306 5.306 14 C 0.067 3.933 15 H 0.135 0.865 16 C -0.239 4.239 17 C 0.001 3.999 18 N -0.232 5.232 19 C -0.114 4.114 20 C -0.117 4.117 21 N -0.109 5.109 22 O 0.024 5.976 23 H 0.080 0.920 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.167 0.833 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.640 6.281 -5.279 14.241 hybrid contribution 0.638 -0.334 0.923 1.171 sum -11.002 5.947 -4.355 13.243 Atomic orbital electron populations 1.21751 0.97592 0.99692 1.01260 1.21830 0.93820 0.99045 1.00696 1.19674 0.94717 0.90743 0.87006 0.94618 1.21692 0.89815 1.39350 1.07998 0.90161 1.24968 0.94706 0.95101 0.97889 1.69896 1.08123 1.44384 1.30578 0.86866 0.80420 0.80073 0.80979 1.20418 1.22555 1.18899 1.60612 1.53610 1.05373 1.10996 1.20037 0.89982 0.90372 0.92905 0.86526 1.22620 0.97027 1.00078 1.04171 1.29335 0.94962 0.91075 0.84553 1.71873 1.07934 1.18163 1.25229 1.25826 1.00682 0.99863 0.85013 1.20057 0.90832 0.97102 1.03670 1.74585 1.01437 1.12065 1.22773 1.85268 1.37898 1.52263 1.22123 0.91970 0.94661 0.94254 0.92083 0.93493 0.92478 0.83253 0.92850 0.87643 0.92228 0.89717 0.89855 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.85 37.16 0.37 -2.24 16 2 C -0.12 -2.38 5.12 -26.73 -0.14 -2.52 16 3 C 0.19 3.95 1.60 -68.87 -0.11 3.84 16 4 H 0.04 0.79 6.38 -51.93 -0.33 0.46 16 5 C -0.55 -13.62 7.72 -34.44 -0.27 -13.89 16 6 H 0.08 2.12 7.19 -52.48 -0.38 1.74 16 7 C 0.08 2.05 5.45 -17.82 -0.10 1.95 16 8 N -0.89 -25.51 13.96 55.43 0.77 -24.74 16 9 Si 0.89 20.73 24.40 -169.99 -4.15 16.58 16 10 H -0.28 -6.42 6.84 56.52 0.39 -6.03 16 11 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.26 -5.92 6.53 56.52 0.37 -5.55 16 13 N -0.67 -12.35 5.36 -102.17 -0.55 -12.90 16 14 C 0.18 3.02 3.13 -68.86 -0.22 2.81 16 15 H 0.12 1.99 7.36 -51.93 -0.38 1.61 16 16 C -0.18 -2.86 8.82 37.16 0.33 -2.53 16 17 C 0.22 3.72 7.35 -13.06 -0.10 3.62 16 18 N -0.50 -8.33 11.55 -9.88 -0.11 -8.44 16 19 C 0.16 2.42 8.22 -156.37 -1.28 1.13 16 20 C -0.06 -0.59 10.51 36.01 0.38 -0.21 16 21 N -0.40 -6.64 12.16 30.89 0.38 -6.26 16 22 O 0.08 1.38 11.31 18.12 0.20 1.59 16 23 H 0.06 1.10 7.58 -51.93 -0.39 0.71 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.05 1.03 3.22 -51.93 -0.17 0.86 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.35 6.36 8.01 -39.29 -0.31 6.05 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.94 6.26 -51.93 -0.33 1.61 16 32 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 286.40 15.07 4.32 4.32 Total: -1.00 -28.11 286.40 -5.13 -33.23 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.86 Total: 4.66 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -1.13 Total: -8.03 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.49 Total: -52.34 kcal Atomic # 8 Polarization: 1.38 SS G_CDS: 0.20 Total: 1.59 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.15 Total: 16.58 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.11 -5.13 -33.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594011615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.961 kcal (2) G-P(sol) polarization free energy of solvation -28.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds