Wall clock time and date at job start Sun Mar 29 2020 22:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46858 * 2 1 4 4 H 1.08998 * 109.47309 * 56.35046 * 3 2 1 5 5 C 1.50699 * 109.46861 * 176.34569 * 3 2 1 6 6 H 1.08003 * 119.99708 * 120.00094 * 5 3 2 7 7 C 1.37871 * 120.00306 * 299.99952 * 5 3 2 8 8 N 1.31512 * 120.00438 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99804 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47594 * 90.00144 * 9 7 5 11 11 H 1.48505 * 109.47268 * 210.00062 * 9 7 5 12 12 H 1.48501 * 109.47051 * 329.99636 * 9 7 5 13 13 N 1.46899 * 109.47313 * 296.34532 * 3 2 1 14 14 C 1.46900 * 111.00143 * 149.94291 * 13 3 2 15 15 H 1.09000 * 109.46963 * 326.26801 * 14 13 3 16 16 C 1.53000 * 109.47327 * 86.26863 * 14 13 3 17 17 C 1.50704 * 109.46914 * 206.27196 * 14 13 3 18 18 N 1.31124 * 126.54953 * 134.99933 * 17 14 13 19 19 C 1.34497 * 105.61284 * 179.97438 * 18 17 14 20 20 C 1.50705 * 126.28648 * 179.97438 * 19 18 17 21 21 N 1.29947 * 107.42444 * 359.97438 * 19 18 17 22 22 O 1.21295 * 110.24737 * 359.97438 * 21 19 18 23 23 H 1.08991 * 109.47169 * 55.28954 * 1 2 3 24 24 H 1.08996 * 109.46960 * 175.29757 * 1 2 3 25 25 H 1.09007 * 109.46924 * 295.29159 * 1 2 3 26 26 H 1.08993 * 109.46598 * 240.00197 * 2 1 3 27 27 H 1.08996 * 109.47011 * 120.00028 * 2 1 3 28 28 H 0.97001 * 120.00221 * 179.97438 * 8 7 5 29 29 H 1.00898 * 110.99925 * 273.89971 * 13 3 2 30 30 H 1.08995 * 109.47189 * 180.02562 * 16 14 13 31 31 H 1.08997 * 109.46691 * 299.99969 * 16 14 13 32 32 H 1.09000 * 109.47149 * 60.00052 * 16 14 13 33 33 H 1.09004 * 109.46856 * 90.00473 * 20 19 18 34 34 H 1.08996 * 109.46936 * 209.99658 * 20 19 18 35 35 H 1.08992 * 109.47243 * 330.00381 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6242 1.9749 0.8554 5 6 3.5442 1.4435 0.0906 6 1 4.1322 1.8942 -0.6953 7 6 4.1699 0.8690 1.1766 8 7 5.4827 0.8694 1.2554 9 14 3.1529 0.0889 2.5355 10 1 2.9253 -1.3448 2.2226 11 1 3.8789 0.2046 3.8258 12 1 1.8461 0.7867 2.6385 13 7 1.6237 2.1091 -1.2411 14 6 1.4327 3.5497 -1.0265 15 1 1.0552 3.7199 -0.0182 16 6 2.7699 4.2728 -1.1993 17 6 0.4414 4.0800 -2.0301 18 7 -0.5583 4.8925 -1.7859 19 6 -1.1624 5.0897 -2.9713 20 6 -2.3726 5.9518 -3.2232 21 7 -0.5110 4.4002 -3.8595 22 8 0.4146 3.8135 -3.3394 23 1 -0.3633 0.5851 -0.8447 24 1 -0.3633 -1.0242 -0.0842 25 1 -0.3633 0.4391 0.9292 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 5.9228 0.4656 2.0197 29 1 2.2862 1.9387 -1.9828 30 1 2.6283 5.3417 -1.0396 31 1 3.4868 3.8892 -0.4733 32 1 3.1474 4.1026 -2.2075 33 1 -2.0527 6.9662 -3.4616 34 1 -2.9413 5.5444 -4.0590 35 1 -2.9988 5.9684 -2.3313 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594011615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:27 Heat of formation + Delta-G solvation = 42.013332 kcal Electronic energy + Delta-G solvation = -17486.350548 eV Core-core repulsion = 14714.836692 eV Total energy + Delta-G solvation = -2771.513856 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.52110 -38.96666 -37.02321 -35.66013 -34.01087 -33.03931 -30.35109 -29.90321 -28.46175 -25.58088 -24.30041 -24.22316 -21.87166 -21.59690 -19.09534 -18.95564 -18.25290 -17.18438 -16.72625 -15.92997 -15.13321 -15.01106 -14.77530 -14.49631 -14.40957 -14.17572 -13.79272 -13.50882 -13.43682 -13.24556 -13.14885 -12.60911 -12.51977 -12.40645 -12.24491 -12.13327 -11.98131 -11.56889 -11.30738 -11.13396 -10.84447 -10.64701 -9.31599 -8.26332 -6.30289 0.16040 1.23638 1.35702 1.41473 1.49601 1.86444 2.35152 2.58421 3.08138 3.11765 3.57535 3.93425 4.06056 4.23470 4.41495 4.47302 4.54590 4.60731 4.65148 4.69597 4.77932 4.86819 4.94808 4.97236 5.12259 5.16173 5.26696 5.35408 5.41930 5.49482 5.63818 6.03559 6.34342 6.53471 6.80359 7.18567 7.37588 8.88580 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036833 B = 0.006491 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.997905 B = 4312.814290 C = 4666.452942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C 0.193 3.807 4 H 0.035 0.965 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.024 3.976 8 N -0.942 5.942 9 Si 0.937 3.063 10 H -0.272 1.272 11 H -0.305 1.305 12 H -0.245 1.245 13 N -0.668 5.668 14 C 0.184 3.816 15 H 0.117 0.883 16 C -0.170 4.170 17 C 0.221 3.779 18 N -0.509 5.509 19 C 0.162 3.838 20 C -0.059 4.059 21 N -0.415 5.415 22 O 0.067 5.933 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.264 0.736 29 H 0.348 0.652 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.106 6.770 -5.033 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.084 3.916 4 H 0.053 0.947 5 C -0.574 4.574 6 H 0.073 0.927 7 C -0.175 4.175 8 N -0.582 5.582 9 Si 0.766 3.234 10 H -0.198 1.198 11 H -0.234 1.234 12 H -0.169 1.169 13 N -0.298 5.298 14 C 0.071 3.929 15 H 0.135 0.865 16 C -0.229 4.229 17 C 0.000 4.000 18 N -0.244 5.244 19 C -0.110 4.110 20 C -0.117 4.117 21 N -0.128 5.128 22 O 0.014 5.986 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.167 0.833 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.127 6.791 -5.458 16.597 hybrid contribution 1.385 -0.400 0.875 1.686 sum -12.742 6.391 -4.583 14.974 Atomic orbital electron populations 1.21656 0.95140 1.01120 1.01500 1.21784 0.95991 0.97838 1.00007 1.19518 0.92078 0.91847 0.88135 0.94743 1.21979 0.91819 1.37131 1.06514 0.92721 1.25680 0.95382 0.96133 1.00319 1.70029 1.09919 1.46654 1.31587 0.86025 0.79700 0.79672 0.78026 1.19841 1.23362 1.16923 1.60569 1.53118 1.06476 1.09683 1.19976 0.90377 0.89400 0.93116 0.86527 1.22465 0.95926 1.00959 1.03556 1.29140 0.95031 0.91331 0.84538 1.71903 1.08047 1.18314 1.26118 1.26718 1.01133 0.99142 0.84046 1.20345 0.89142 0.97232 1.04992 1.74592 1.01902 1.13054 1.23292 1.85253 1.38439 1.52771 1.22116 0.91915 0.92655 0.93825 0.92393 0.94618 0.92725 0.83273 0.91081 0.90317 0.91762 0.87694 0.88284 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.85 71.98 0.71 -3.78 16 2 C -0.12 -4.64 5.12 30.60 0.16 -4.48 16 3 C 0.19 7.98 1.60 44.17 0.07 8.05 16 4 H 0.03 1.46 6.38 -2.39 -0.02 1.45 16 5 C -0.54 -26.77 7.72 25.60 0.20 -26.57 16 6 H 0.05 2.97 7.19 -2.91 -0.02 2.94 16 7 C 0.02 1.27 5.45 84.65 0.46 1.73 16 8 N -0.94 -55.23 13.96 21.44 0.30 -54.93 16 9 Si 0.94 42.38 24.40 68.60 1.67 44.05 16 10 H -0.27 -11.98 6.84 99.48 0.68 -11.29 16 11 H -0.31 -14.08 7.11 99.48 0.71 -13.38 16 12 H -0.25 -10.23 6.53 99.48 0.65 -9.58 16 13 N -0.67 -23.85 5.36 -477.16 -2.56 -26.40 16 14 C 0.18 5.99 3.13 44.17 0.14 6.13 16 15 H 0.12 3.82 7.36 -2.39 -0.02 3.80 16 16 C -0.17 -5.33 8.82 71.98 0.64 -4.69 16 17 C 0.22 7.08 7.35 88.38 0.65 7.73 16 18 N -0.51 -16.00 11.55 -303.24 -3.50 -19.50 16 19 C 0.16 4.55 8.22 138.46 1.14 5.69 16 20 C -0.06 -1.00 10.51 71.24 0.75 -0.25 16 21 N -0.41 -13.14 12.16 -60.35 -0.73 -13.88 16 22 O 0.07 2.21 11.31 74.92 0.85 3.05 16 23 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.04 1.38 8.14 -2.38 -0.02 1.37 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.04 1.49 3.22 -2.39 -0.01 1.48 16 28 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.35 12.62 8.01 -89.70 -0.72 11.90 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 2.93 6.26 -2.39 -0.01 2.92 16 32 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -59.81 286.40 1.23 -58.58 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.30 Total: 19.47 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 4.90 Total: -10.45 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -6.49 Total: -114.70 kcal Atomic # 8 Polarization: 2.21 SS G_CDS: 0.85 Total: 3.05 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.67 Total: 44.05 kcal Total: -59.81 1.23 -58.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594011615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.589 kcal (2) G-P(sol) polarization free energy of solvation -59.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds