Wall clock time and date at job start Sun Mar 29 2020 22:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46842 * 2 1 4 4 H 1.09000 * 109.47640 * 305.46081 * 3 2 1 5 5 C 1.50704 * 109.47098 * 185.46113 * 3 2 1 6 6 H 1.08003 * 119.99467 * 242.76757 * 5 3 2 7 7 C 1.37872 * 119.99863 * 62.76669 * 5 3 2 8 8 N 1.31519 * 119.99611 * 195.48043 * 7 5 3 9 9 Si 1.86798 * 120.00123 * 15.48217 * 7 5 3 10 10 H 1.48498 * 109.47229 * 90.90678 * 9 7 5 11 11 H 1.48500 * 109.47000 * 210.90593 * 9 7 5 12 12 H 1.48494 * 109.47007 * 330.90284 * 9 7 5 13 13 N 1.46900 * 109.47209 * 65.46381 * 3 2 1 14 14 C 1.46906 * 111.00098 * 205.77743 * 13 3 2 15 15 H 1.08996 * 109.46508 * 326.16294 * 14 13 3 16 16 C 1.52998 * 109.47239 * 86.16047 * 14 13 3 17 17 C 1.50699 * 109.47188 * 206.16148 * 14 13 3 18 18 N 1.31126 * 126.55025 * 134.99552 * 17 14 13 19 19 C 1.34495 * 105.61590 * 179.74108 * 18 17 14 20 20 C 1.50694 * 126.28901 * 180.02562 * 19 18 17 21 21 N 1.29945 * 107.42241 * 359.97438 * 19 18 17 22 22 O 1.21297 * 110.25392 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.46947 * 184.60351 * 1 2 3 24 24 H 1.08992 * 109.47360 * 304.61003 * 1 2 3 25 25 H 1.08997 * 109.46930 * 64.61043 * 1 2 3 26 26 H 1.09000 * 109.47519 * 239.99844 * 2 1 3 27 27 H 1.09002 * 109.46811 * 119.99908 * 2 1 3 28 28 H 0.97005 * 119.99747 * 180.02562 * 8 7 5 29 29 H 1.00893 * 111.00372 * 81.81847 * 13 3 2 30 30 H 1.08998 * 109.47089 * 175.00069 * 16 14 13 31 31 H 1.09005 * 109.47039 * 294.99593 * 16 14 13 32 32 H 1.09000 * 109.47503 * 54.99642 * 16 14 13 33 33 H 1.09001 * 109.47484 * 90.00029 * 20 19 18 34 34 H 1.09001 * 109.47183 * 209.99645 * 20 19 18 35 35 H 1.09006 * 109.47467 * 329.99586 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9839 -0.8370 5 6 3.5409 1.4447 -0.1352 6 1 4.1539 1.8470 0.6578 7 6 4.1315 0.9333 -1.2713 8 7 5.4162 0.6518 -1.2747 9 14 3.1069 0.6403 -2.8055 10 1 3.1370 1.8544 -3.6601 11 1 3.6643 -0.5105 -3.5606 12 1 1.7051 0.3441 -2.4154 13 7 1.6609 2.0959 1.2599 14 6 1.5628 3.5517 1.0893 15 1 2.3052 3.8832 0.3634 16 6 0.1630 3.9133 0.5886 17 6 1.8144 4.2305 2.4110 18 7 2.5761 5.2775 2.6186 19 6 2.4933 5.5297 3.9371 20 6 3.1915 6.6405 4.6783 21 7 1.6998 4.6401 4.4543 22 8 1.2991 3.8842 3.5944 23 1 -0.3633 -1.0244 0.0825 24 1 -0.3634 0.5837 0.8457 25 1 -0.3633 0.4406 -0.9284 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8317 0.2923 -2.0741 29 1 2.3076 1.8611 1.9979 30 1 0.0610 4.9977 0.5467 31 1 0.0141 3.4957 -0.4072 32 1 -0.5834 3.5042 1.2695 33 1 2.5561 7.5261 4.6884 34 1 3.3910 6.3249 5.7023 35 1 4.1326 6.8743 4.1803 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594011616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:30 Heat of formation + Delta-G solvation = 61.622971 kcal Electronic energy + Delta-G solvation = -17473.091007 eV Core-core repulsion = 14702.427489 eV Total energy + Delta-G solvation = -2770.663518 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.32395 -37.29521 -35.82033 -34.09941 -32.13001 -31.54224 -29.27078 -28.92654 -26.60498 -24.28936 -23.06909 -22.42852 -20.39680 -19.69755 -17.84920 -17.40858 -16.82384 -15.48170 -15.06559 -14.64085 -13.88001 -13.62749 -13.54616 -13.04255 -12.90358 -12.62543 -12.55183 -12.15506 -12.02229 -11.65296 -11.46809 -11.27800 -11.13756 -10.89724 -10.79975 -10.77768 -10.35919 -9.85865 -9.65687 -9.60692 -9.26663 -8.53883 -7.66017 -6.21504 -4.19713 1.37803 2.42249 3.08549 3.22390 3.32554 3.34671 3.78084 4.19548 4.33137 4.87845 5.06854 5.11564 5.33056 5.41916 5.47521 5.63632 5.73962 5.93749 6.03483 6.05269 6.11411 6.14205 6.21368 6.30641 6.44653 6.59841 6.77135 6.95296 7.07881 7.27748 7.45977 7.77155 8.11450 8.34848 8.41942 8.83102 9.43686 10.91306 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.028591 B = 0.007037 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.082191 B = 3978.004737 C = 4471.233568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C 0.189 3.811 4 H 0.034 0.966 5 C -0.560 4.560 6 H 0.071 0.929 7 C 0.082 3.918 8 N -0.887 5.887 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.245 1.245 13 N -0.669 5.669 14 C 0.177 3.823 15 H 0.099 0.901 16 C -0.138 4.138 17 C 0.202 3.798 18 N -0.486 5.486 19 C 0.160 3.840 20 C -0.059 4.059 21 N -0.396 5.396 22 O 0.085 5.915 23 H 0.032 0.968 24 H 0.062 0.938 25 H 0.037 0.963 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.265 0.735 29 H 0.341 0.659 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.629 7.122 5.595 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C 0.080 3.920 4 H 0.051 0.949 5 C -0.598 4.598 6 H 0.089 0.911 7 C -0.123 4.123 8 N -0.523 5.523 9 Si 0.688 3.312 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.169 1.169 13 N -0.301 5.301 14 C 0.065 3.935 15 H 0.117 0.883 16 C -0.196 4.196 17 C -0.019 4.019 18 N -0.220 5.220 19 C -0.113 4.113 20 C -0.118 4.118 21 N -0.105 5.105 22 O 0.028 5.972 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.159 0.841 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.057 7.257 6.151 13.135 hybrid contribution 0.759 -0.078 -1.084 1.325 sum -8.298 7.179 5.067 12.086 Atomic orbital electron populations 1.21771 0.97798 0.99582 1.01131 1.21832 0.93513 0.98487 1.01020 1.19575 0.94454 0.91172 0.86786 0.94861 1.21638 0.90327 1.42726 1.05126 0.91136 1.24941 0.94731 0.93753 0.98854 1.70002 1.11446 1.41955 1.28870 0.87251 0.82407 0.78064 0.83446 1.20617 1.21315 1.16912 1.61081 1.55434 1.03117 1.10484 1.20184 0.99556 0.89577 0.84171 0.88307 1.21856 0.94779 1.00424 1.02568 1.29225 0.89680 0.91480 0.91513 1.71940 1.20966 1.14869 1.14235 1.25877 0.97918 0.99045 0.88426 1.20080 1.00050 0.92674 0.98961 1.74593 1.16263 1.05359 1.14318 1.85303 1.53797 1.43621 1.14503 0.94847 0.91866 0.94354 0.92643 0.92718 0.92564 0.84081 0.92641 0.90622 0.91379 0.89657 0.89759 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.86 37.16 0.37 -2.12 16 2 C -0.11 -2.25 4.85 -26.73 -0.13 -2.38 16 3 C 0.19 4.05 1.33 -68.86 -0.09 3.95 16 4 H 0.03 0.72 6.05 -51.93 -0.31 0.41 16 5 C -0.56 -14.67 8.77 -34.44 -0.30 -14.97 16 6 H 0.07 2.05 7.95 -52.48 -0.42 1.63 16 7 C 0.08 2.23 5.32 -17.82 -0.09 2.13 16 8 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 9 Si 0.86 20.06 25.77 -169.99 -4.38 15.68 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.25 -5.27 5.40 56.52 0.31 -4.96 16 13 N -0.67 -12.49 5.45 -102.17 -0.56 -13.05 16 14 C 0.18 3.03 2.96 -68.86 -0.20 2.83 16 15 H 0.10 1.89 7.65 -51.93 -0.40 1.49 16 16 C -0.14 -1.94 9.37 37.16 0.35 -1.59 16 17 C 0.20 3.49 6.99 -13.06 -0.09 3.39 16 18 N -0.49 -8.59 11.55 -9.87 -0.11 -8.70 16 19 C 0.16 2.53 8.22 -156.38 -1.28 1.24 16 20 C -0.06 -0.64 10.51 36.00 0.38 -0.26 16 21 N -0.40 -6.68 12.16 30.89 0.38 -6.31 16 22 O 0.09 1.46 11.31 18.10 0.20 1.67 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 1.04 7.65 -51.93 -0.40 0.64 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.20 4.68 -51.93 -0.24 0.96 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.34 6.73 7.99 -39.30 -0.31 6.41 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.05 7.59 -51.93 -0.39 0.66 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 290.98 15.07 4.39 4.39 Total: -1.00 -29.29 290.98 -5.51 -34.80 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.09 Total: 4.69 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -1.11 Total: -7.77 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.48 Total: -53.45 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.20 Total: 1.67 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.38 Total: 15.68 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.29 -5.51 -34.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594011616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.423 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds