Wall clock time and date at job start Sun Mar 29 2020 22:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46842 * 2 1 4 4 H 1.09000 * 109.47640 * 305.46081 * 3 2 1 5 5 C 1.50704 * 109.47098 * 185.46113 * 3 2 1 6 6 H 1.08003 * 119.99467 * 242.76757 * 5 3 2 7 7 C 1.37872 * 119.99863 * 62.76669 * 5 3 2 8 8 N 1.31519 * 119.99611 * 195.48043 * 7 5 3 9 9 Si 1.86798 * 120.00123 * 15.48217 * 7 5 3 10 10 H 1.48498 * 109.47229 * 90.90678 * 9 7 5 11 11 H 1.48500 * 109.47000 * 210.90593 * 9 7 5 12 12 H 1.48494 * 109.47007 * 330.90284 * 9 7 5 13 13 N 1.46900 * 109.47209 * 65.46381 * 3 2 1 14 14 C 1.46906 * 111.00098 * 205.77743 * 13 3 2 15 15 H 1.08996 * 109.46508 * 326.16294 * 14 13 3 16 16 C 1.52998 * 109.47239 * 86.16047 * 14 13 3 17 17 C 1.50699 * 109.47188 * 206.16148 * 14 13 3 18 18 N 1.31126 * 126.55025 * 134.99552 * 17 14 13 19 19 C 1.34495 * 105.61590 * 179.74108 * 18 17 14 20 20 C 1.50694 * 126.28901 * 180.02562 * 19 18 17 21 21 N 1.29945 * 107.42241 * 359.97438 * 19 18 17 22 22 O 1.21297 * 110.25392 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.46947 * 184.60351 * 1 2 3 24 24 H 1.08992 * 109.47360 * 304.61003 * 1 2 3 25 25 H 1.08997 * 109.46930 * 64.61043 * 1 2 3 26 26 H 1.09000 * 109.47519 * 239.99844 * 2 1 3 27 27 H 1.09002 * 109.46811 * 119.99908 * 2 1 3 28 28 H 0.97005 * 119.99747 * 180.02562 * 8 7 5 29 29 H 1.00893 * 111.00372 * 81.81847 * 13 3 2 30 30 H 1.08998 * 109.47089 * 175.00069 * 16 14 13 31 31 H 1.09005 * 109.47039 * 294.99593 * 16 14 13 32 32 H 1.09000 * 109.47503 * 54.99642 * 16 14 13 33 33 H 1.09001 * 109.47484 * 90.00029 * 20 19 18 34 34 H 1.09001 * 109.47183 * 209.99645 * 20 19 18 35 35 H 1.09006 * 109.47467 * 329.99586 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9839 -0.8370 5 6 3.5409 1.4447 -0.1352 6 1 4.1539 1.8470 0.6578 7 6 4.1315 0.9333 -1.2713 8 7 5.4162 0.6518 -1.2747 9 14 3.1069 0.6403 -2.8055 10 1 3.1370 1.8544 -3.6601 11 1 3.6643 -0.5105 -3.5606 12 1 1.7051 0.3441 -2.4154 13 7 1.6609 2.0959 1.2599 14 6 1.5628 3.5517 1.0893 15 1 2.3052 3.8832 0.3634 16 6 0.1630 3.9133 0.5886 17 6 1.8144 4.2305 2.4110 18 7 2.5761 5.2775 2.6186 19 6 2.4933 5.5297 3.9371 20 6 3.1915 6.6405 4.6783 21 7 1.6998 4.6401 4.4543 22 8 1.2991 3.8842 3.5944 23 1 -0.3633 -1.0244 0.0825 24 1 -0.3634 0.5837 0.8457 25 1 -0.3633 0.4406 -0.9284 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8317 0.2923 -2.0741 29 1 2.3076 1.8611 1.9979 30 1 0.0610 4.9977 0.5467 31 1 0.0141 3.4957 -0.4072 32 1 -0.5834 3.5042 1.2695 33 1 2.5561 7.5261 4.6884 34 1 3.3910 6.3249 5.7023 35 1 4.1326 6.8743 4.1803 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594011616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:29 Heat of formation + Delta-G solvation = 39.628357 kcal Electronic energy + Delta-G solvation = -17474.044765 eV Core-core repulsion = 14702.427489 eV Total energy + Delta-G solvation = -2771.617276 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.62328 -38.85481 -37.11129 -35.64786 -34.03797 -32.90992 -30.64350 -30.00906 -28.35555 -25.69481 -24.43584 -23.99048 -21.80428 -21.28067 -19.20938 -19.16490 -18.33596 -17.07241 -16.67283 -16.19887 -15.27546 -14.96302 -14.78696 -14.47792 -14.32048 -13.99904 -13.84390 -13.59907 -13.29817 -13.17966 -12.90994 -12.65960 -12.54529 -12.40908 -12.36342 -12.12413 -12.00877 -11.51429 -11.38088 -11.08408 -10.90357 -10.58926 -9.30688 -8.32891 -6.34987 0.04719 1.15030 1.38216 1.42298 1.51782 1.73267 2.36374 2.55008 3.01274 3.03860 3.46422 3.83779 4.20291 4.32704 4.50426 4.51814 4.56148 4.60560 4.64290 4.74306 4.85056 4.89805 4.94882 5.01366 5.07184 5.27558 5.32322 5.40990 5.53143 5.54759 5.76986 6.00175 6.29251 6.43631 6.73022 7.10060 7.32339 8.83752 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.028591 B = 0.007037 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.082191 B = 3978.004737 C = 4471.233568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.196 3.804 4 H 0.044 0.956 5 C -0.558 4.558 6 H 0.024 0.976 7 C 0.022 3.978 8 N -0.942 5.942 9 Si 0.926 3.074 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.211 1.211 13 N -0.656 5.656 14 C 0.178 3.822 15 H 0.076 0.924 16 C -0.130 4.130 17 C 0.200 3.800 18 N -0.509 5.509 19 C 0.161 3.839 20 C -0.060 4.060 21 N -0.409 5.409 22 O 0.077 5.923 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.265 0.735 29 H 0.332 0.668 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.084 7.706 5.329 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.086 3.914 4 H 0.061 0.939 5 C -0.597 4.597 6 H 0.042 0.958 7 C -0.177 4.177 8 N -0.581 5.581 9 Si 0.749 3.251 10 H -0.203 1.203 11 H -0.218 1.218 12 H -0.133 1.133 13 N -0.286 5.286 14 C 0.066 3.934 15 H 0.093 0.907 16 C -0.188 4.188 17 C -0.021 4.021 18 N -0.244 5.244 19 C -0.112 4.112 20 C -0.118 4.118 21 N -0.121 5.121 22 O 0.023 5.977 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.149 0.851 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.557 7.841 5.897 15.160 hybrid contribution 1.625 -0.188 -0.869 1.853 sum -9.931 7.653 5.028 13.509 Atomic orbital electron populations 1.21681 0.94540 1.01145 1.02018 1.21770 0.96339 0.96890 1.00027 1.19471 0.91032 0.92619 0.88245 0.93853 1.21960 0.92859 1.41258 1.03576 0.95764 1.25859 0.95776 0.93716 1.02368 1.70154 1.13808 1.44226 1.29870 0.86229 0.82382 0.77726 0.78758 1.20271 1.21780 1.13293 1.61124 1.54325 1.04234 1.08918 1.20241 1.01017 0.88327 0.83849 0.90658 1.21834 0.92491 1.01609 1.02900 1.29206 0.89718 0.91564 0.91623 1.71964 1.21400 1.15484 1.15570 1.26747 0.97113 0.99370 0.87954 1.20361 1.00324 0.91911 0.99210 1.74583 1.17260 1.05939 1.14339 1.85281 1.54087 1.43951 1.14407 0.92997 0.91159 0.93297 0.93796 0.93764 0.92648 0.85117 0.91104 0.89923 0.90296 0.87220 0.88125 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.86 71.98 0.71 -3.44 16 2 C -0.11 -4.36 4.85 30.60 0.15 -4.21 16 3 C 0.20 8.21 1.33 44.17 0.06 8.27 16 4 H 0.04 1.77 6.05 -2.39 -0.01 1.75 16 5 C -0.56 -29.98 8.77 25.60 0.22 -29.76 16 6 H 0.02 1.48 7.95 -2.91 -0.02 1.46 16 7 C 0.02 1.22 5.32 84.65 0.45 1.67 16 8 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 9 Si 0.93 41.01 25.77 68.60 1.77 42.78 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.21 -8.11 5.40 99.48 0.54 -7.58 16 13 N -0.66 -24.12 5.45 -477.15 -2.60 -26.72 16 14 C 0.18 5.96 2.96 44.17 0.13 6.09 16 15 H 0.08 2.91 7.65 -2.39 -0.02 2.89 16 16 C -0.13 -3.34 9.37 71.98 0.67 -2.67 16 17 C 0.20 6.83 6.99 88.38 0.62 7.45 16 18 N -0.51 -17.81 11.55 -303.21 -3.50 -21.32 16 19 C 0.16 4.90 8.22 138.46 1.14 6.04 16 20 C -0.06 -1.17 10.51 71.23 0.75 -0.42 16 21 N -0.41 -13.48 12.16 -60.34 -0.73 -14.21 16 22 O 0.08 2.61 11.31 74.83 0.85 3.45 16 23 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 2.05 7.65 -2.39 -0.02 2.03 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 1.80 4.68 -2.39 -0.01 1.79 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 29 H 0.33 13.34 7.99 -89.70 -0.72 12.62 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 2.03 7.59 -2.38 -0.02 2.01 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -64.83 290.98 1.18 -63.65 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.20 Total: 20.62 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 4.90 Total: -10.98 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -6.54 Total: -119.52 kcal Atomic # 8 Polarization: 2.61 SS G_CDS: 0.85 Total: 3.45 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.77 Total: 42.78 kcal Total: -64.83 1.18 -63.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594011616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.275 kcal (2) G-P(sol) polarization free energy of solvation -64.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds