Wall clock time and date at job start Sun Mar 29 2020 22:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46958 * 2 1 4 4 H 1.09006 * 109.47071 * 177.54269 * 3 2 1 5 5 C 1.50703 * 109.47215 * 57.54147 * 3 2 1 6 6 H 1.07999 * 119.99745 * 239.99853 * 5 3 2 7 7 C 1.37878 * 119.99875 * 60.00156 * 5 3 2 8 8 N 1.31513 * 119.99755 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00146 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46957 * 59.99562 * 9 7 5 11 11 H 1.48494 * 109.47108 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46874 * 300.00037 * 9 7 5 13 13 N 1.46902 * 109.47537 * 297.54196 * 3 2 1 14 14 C 1.46895 * 110.99917 * 274.40701 * 13 3 2 15 15 H 1.09001 * 109.47744 * 34.64217 * 14 13 3 16 16 C 1.52998 * 109.47131 * 274.64313 * 14 13 3 17 17 C 1.50705 * 109.47382 * 154.64480 * 14 13 3 18 18 N 1.31129 * 126.55266 * 224.71242 * 17 14 13 19 19 C 1.34495 * 105.61515 * 179.91593 * 18 17 14 20 20 C 1.50697 * 126.28869 * 180.12413 * 19 18 17 21 21 N 1.29943 * 107.42253 * 0.34906 * 19 18 17 22 22 O 1.21304 * 110.25560 * 359.77753 * 21 19 18 23 23 H 1.09002 * 109.47369 * 54.54392 * 1 2 3 24 24 H 1.09002 * 109.47413 * 294.54356 * 1 2 3 25 25 H 1.09005 * 109.47017 * 174.54081 * 1 2 3 26 26 H 1.08999 * 109.47106 * 119.99859 * 2 1 3 27 27 H 1.09001 * 109.47167 * 240.00003 * 2 1 3 28 28 H 0.97006 * 119.99692 * 180.02562 * 8 7 5 29 29 H 1.00894 * 111.00396 * 150.44418 * 13 3 2 30 30 H 1.09000 * 109.46951 * 59.99811 * 16 14 13 31 31 H 1.08994 * 109.47753 * 180.02562 * 16 14 13 32 32 H 1.09002 * 109.47402 * 300.00202 * 16 14 13 33 33 H 1.08994 * 109.47534 * 270.24153 * 20 19 18 34 34 H 1.09007 * 109.46980 * 30.23929 * 20 19 18 35 35 H 1.09001 * 109.46847 * 150.23350 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1291 1.4428 0.0441 5 6 1.4884 2.1703 1.1989 6 1 0.8723 3.0467 1.0622 7 6 1.7705 1.7173 2.4702 8 7 2.5204 0.6498 2.6365 9 14 1.0875 2.6198 3.9563 10 1 -0.3963 2.6200 3.8964 11 1 1.5334 1.9376 5.1976 12 1 1.5831 4.0196 3.9560 13 7 1.5994 2.1177 -1.2280 14 6 2.5361 1.8673 -2.3315 15 1 2.9412 0.8593 -2.2427 16 6 3.6786 2.8831 -2.2710 17 6 1.8119 2.0036 -3.6460 18 7 1.8999 1.1939 -4.6737 19 6 1.0834 1.7081 -5.6107 20 6 0.8307 1.1391 -6.9830 21 7 0.5562 2.7883 -5.1170 22 8 0.9617 2.9759 -3.9892 23 1 -0.3634 0.5961 -0.8371 24 1 -0.3634 0.4269 0.9348 25 1 -0.3633 -1.0231 -0.0978 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.7186 0.3309 3.5310 29 1 1.4791 3.1074 -1.0733 30 1 4.2024 2.7846 -1.3202 31 1 4.3735 2.6977 -3.0900 32 1 3.2736 3.8912 -2.3599 33 1 1.5516 1.5545 -7.6871 34 1 0.9366 0.0546 -6.9519 35 1 -0.1791 1.3964 -7.3027 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594011617.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:31 Heat of formation + Delta-G solvation = 57.082704 kcal Electronic energy + Delta-G solvation = -17436.549625 eV Core-core repulsion = 14665.689226 eV Total energy + Delta-G solvation = -2770.860399 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.24242 -37.26449 -35.75859 -34.09155 -32.07745 -31.00656 -29.01493 -28.61892 -26.00640 -24.27800 -23.23841 -23.01799 -20.60475 -18.97562 -17.78871 -17.21316 -16.51369 -15.21923 -14.84502 -14.16982 -13.95759 -13.77156 -13.55758 -13.08948 -12.86859 -12.65327 -12.15214 -12.10721 -11.91403 -11.74292 -11.22622 -11.06976 -10.93837 -10.82730 -10.70293 -10.42172 -10.19177 -9.89295 -9.57905 -9.44517 -8.89005 -8.55342 -7.54296 -6.08566 -4.14274 1.46991 2.47565 3.19335 3.28331 3.33568 3.36283 3.81754 4.23598 4.37223 5.00870 5.17324 5.23795 5.31430 5.33205 5.42449 5.50581 5.68873 5.92405 6.03375 6.07853 6.25188 6.34327 6.47137 6.64684 6.79194 7.12716 7.18135 7.39105 7.64617 7.68199 7.75496 8.10566 8.21570 8.44816 8.49258 8.91689 9.50719 10.97468 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.040752 B = 0.005800 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.913910 B = 4826.482698 C = 4932.268483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.010 0.990 5 C -0.516 4.516 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.171 3.829 15 H 0.118 0.882 16 C -0.177 4.177 17 C 0.224 3.776 18 N -0.497 5.497 19 C 0.159 3.841 20 C -0.058 4.058 21 N -0.398 5.398 22 O 0.081 5.919 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.013 0.987 26 H 0.089 0.911 27 H 0.011 0.989 28 H 0.262 0.738 29 H 0.343 0.657 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 1.603 -11.685 11.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.028 0.972 5 C -0.554 4.554 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.311 5.311 14 C 0.058 3.942 15 H 0.136 0.864 16 C -0.237 4.237 17 C 0.003 3.997 18 N -0.231 5.231 19 C -0.114 4.114 20 C -0.117 4.117 21 N -0.109 5.109 22 O 0.024 5.976 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.032 0.968 26 H 0.107 0.893 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.162 0.838 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.324 1.116 -12.374 12.429 hybrid contribution 0.365 0.936 1.233 1.591 sum 0.041 2.052 -11.141 11.329 Atomic orbital electron populations 1.21439 0.97435 0.97249 1.01572 1.21485 0.95255 0.98037 0.99592 1.19205 0.93898 0.91582 0.84045 0.97236 1.21073 1.32087 1.12192 0.90085 0.92118 1.24850 0.94963 0.94965 0.98822 1.69869 1.37236 1.22985 1.22465 0.86611 0.79515 0.79741 0.81872 1.20191 1.21349 1.20317 1.60656 1.45979 1.17233 1.07210 1.20086 0.89273 1.01939 0.82950 0.86419 1.22507 0.98450 0.99104 1.03599 1.29222 0.89444 0.83265 0.97799 1.71874 1.22675 1.27876 1.00696 1.25819 0.94348 0.91359 0.99835 1.20056 1.03127 1.01688 0.86783 1.74581 1.21530 1.19942 0.94804 1.85268 1.45668 1.43658 1.22962 0.93720 0.92744 0.96765 0.89308 0.96987 0.92784 0.83815 0.89818 0.92292 0.91864 0.89757 0.89284 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.45 37.16 0.35 -2.30 16 2 C -0.11 -2.43 5.55 -26.74 -0.15 -2.58 16 3 C 0.22 5.00 2.11 -68.86 -0.15 4.86 16 4 H 0.01 0.24 7.14 -51.93 -0.37 -0.13 16 5 C -0.52 -12.95 7.31 -34.44 -0.25 -13.20 16 6 H 0.06 1.52 7.61 -52.49 -0.40 1.12 16 7 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -23.84 11.34 55.43 0.63 -23.21 16 9 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.68 -13.17 5.29 -102.17 -0.54 -13.71 16 14 C 0.17 2.88 2.93 -68.87 -0.20 2.68 16 15 H 0.12 2.07 7.15 -51.93 -0.37 1.70 16 16 C -0.18 -2.53 9.13 37.16 0.34 -2.19 16 17 C 0.22 3.84 7.35 -13.06 -0.10 3.75 16 18 N -0.50 -8.53 11.55 -9.87 -0.11 -8.64 16 19 C 0.16 2.49 8.22 -156.38 -1.28 1.20 16 20 C -0.06 -0.61 10.51 36.00 0.38 -0.23 16 21 N -0.40 -6.80 12.16 30.90 0.38 -6.43 16 22 O 0.08 1.42 11.31 18.10 0.20 1.62 16 23 H 0.04 0.98 7.52 -51.93 -0.39 0.58 16 24 H 0.05 1.29 7.36 -51.93 -0.38 0.91 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 2.28 6.14 -51.93 -0.32 1.96 16 27 H 0.01 0.25 7.45 -51.93 -0.39 -0.13 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.34 6.46 7.94 -39.29 -0.31 6.14 16 30 H 0.08 1.26 7.46 -51.93 -0.39 0.87 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -27.61 293.28 -6.19 -33.80 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.99 Total: 3.22 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.15 Total: -6.40 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.35 Total: -51.99 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.20 Total: 1.62 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.61 -6.19 -33.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594011617.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.882 kcal (2) G-P(sol) polarization free energy of solvation -27.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds