Wall clock time and date at job start Sun Mar 29 2020 22:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46958 * 2 1 4 4 H 1.09006 * 109.47071 * 177.54269 * 3 2 1 5 5 C 1.50703 * 109.47215 * 57.54147 * 3 2 1 6 6 H 1.07999 * 119.99745 * 239.99853 * 5 3 2 7 7 C 1.37878 * 119.99875 * 60.00156 * 5 3 2 8 8 N 1.31513 * 119.99755 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00146 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46957 * 59.99562 * 9 7 5 11 11 H 1.48494 * 109.47108 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46874 * 300.00037 * 9 7 5 13 13 N 1.46902 * 109.47537 * 297.54196 * 3 2 1 14 14 C 1.46895 * 110.99917 * 274.40701 * 13 3 2 15 15 H 1.09001 * 109.47744 * 34.64217 * 14 13 3 16 16 C 1.52998 * 109.47131 * 274.64313 * 14 13 3 17 17 C 1.50705 * 109.47382 * 154.64480 * 14 13 3 18 18 N 1.31129 * 126.55266 * 224.71242 * 17 14 13 19 19 C 1.34495 * 105.61515 * 179.91593 * 18 17 14 20 20 C 1.50697 * 126.28869 * 180.12413 * 19 18 17 21 21 N 1.29943 * 107.42253 * 0.34906 * 19 18 17 22 22 O 1.21304 * 110.25560 * 359.77753 * 21 19 18 23 23 H 1.09002 * 109.47369 * 54.54392 * 1 2 3 24 24 H 1.09002 * 109.47413 * 294.54356 * 1 2 3 25 25 H 1.09005 * 109.47017 * 174.54081 * 1 2 3 26 26 H 1.08999 * 109.47106 * 119.99859 * 2 1 3 27 27 H 1.09001 * 109.47167 * 240.00003 * 2 1 3 28 28 H 0.97006 * 119.99692 * 180.02562 * 8 7 5 29 29 H 1.00894 * 111.00396 * 150.44418 * 13 3 2 30 30 H 1.09000 * 109.46951 * 59.99811 * 16 14 13 31 31 H 1.08994 * 109.47753 * 180.02562 * 16 14 13 32 32 H 1.09002 * 109.47402 * 300.00202 * 16 14 13 33 33 H 1.08994 * 109.47534 * 270.24153 * 20 19 18 34 34 H 1.09007 * 109.46980 * 30.23929 * 20 19 18 35 35 H 1.09001 * 109.46847 * 150.23350 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1291 1.4428 0.0441 5 6 1.4884 2.1703 1.1989 6 1 0.8723 3.0467 1.0622 7 6 1.7705 1.7173 2.4702 8 7 2.5204 0.6498 2.6365 9 14 1.0875 2.6198 3.9563 10 1 -0.3963 2.6200 3.8964 11 1 1.5334 1.9376 5.1976 12 1 1.5831 4.0196 3.9560 13 7 1.5994 2.1177 -1.2280 14 6 2.5361 1.8673 -2.3315 15 1 2.9412 0.8593 -2.2427 16 6 3.6786 2.8831 -2.2710 17 6 1.8119 2.0036 -3.6460 18 7 1.8999 1.1939 -4.6737 19 6 1.0834 1.7081 -5.6107 20 6 0.8307 1.1391 -6.9830 21 7 0.5562 2.7883 -5.1170 22 8 0.9617 2.9759 -3.9892 23 1 -0.3634 0.5961 -0.8371 24 1 -0.3634 0.4269 0.9348 25 1 -0.3633 -1.0231 -0.0978 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.7186 0.3309 3.5310 29 1 1.4791 3.1074 -1.0733 30 1 4.2024 2.7846 -1.3202 31 1 4.3735 2.6977 -3.0900 32 1 3.2736 3.8912 -2.3599 33 1 1.5516 1.5545 -7.6871 34 1 0.9366 0.0546 -6.9519 35 1 -0.1791 1.3964 -7.3027 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594011617.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:31 Heat of formation + Delta-G solvation = 38.491712 kcal Electronic energy + Delta-G solvation = -17437.355791 eV Core-core repulsion = 14665.689226 eV Total energy + Delta-G solvation = -2771.666565 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.51764 -38.85095 -37.01824 -35.73259 -33.63697 -32.66372 -30.27898 -29.91779 -27.77612 -25.72290 -25.01459 -24.27419 -22.01190 -20.68909 -19.09455 -18.74510 -18.04523 -17.01917 -16.36826 -15.82260 -15.45208 -14.97353 -14.79113 -14.42716 -14.16952 -13.90588 -13.80745 -13.60203 -13.27579 -13.15503 -12.77256 -12.56936 -12.55979 -12.34306 -12.25696 -12.02895 -11.90029 -11.69141 -11.33737 -10.88679 -10.77407 -10.50291 -9.17324 -8.06018 -6.16445 0.16196 1.23598 1.47413 1.49247 1.55258 1.86831 2.45130 2.63436 3.10785 3.24593 3.66182 3.91994 4.02641 4.22124 4.52995 4.60272 4.63229 4.67795 4.74434 4.79497 4.80977 4.94678 4.97017 5.11993 5.15339 5.31741 5.38219 5.55275 5.74600 5.80209 5.86599 6.28431 6.40969 6.70682 7.00929 7.18534 7.51591 8.99025 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.040752 B = 0.005800 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.913910 B = 4826.482698 C = 4932.268483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C 0.228 3.772 4 H -0.009 1.009 5 C -0.522 4.522 6 H 0.059 0.941 7 C 0.024 3.976 8 N -0.913 5.913 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.271 1.271 13 N -0.679 5.679 14 C 0.175 3.825 15 H 0.110 0.890 16 C -0.168 4.168 17 C 0.221 3.779 18 N -0.510 5.510 19 C 0.162 3.838 20 C -0.059 4.059 21 N -0.415 5.415 22 O 0.067 5.933 23 H 0.045 0.955 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.021 0.979 28 H 0.261 0.739 29 H 0.346 0.654 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 1.955 -12.913 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C 0.121 3.879 4 H 0.008 0.992 5 C -0.561 4.561 6 H 0.077 0.923 7 C -0.176 4.176 8 N -0.552 5.552 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.312 5.312 14 C 0.062 3.938 15 H 0.128 0.872 16 C -0.227 4.227 17 C 0.000 4.000 18 N -0.246 5.246 19 C -0.111 4.111 20 C -0.117 4.117 21 N -0.129 5.129 22 O 0.014 5.986 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.165 0.835 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.634 1.491 -13.601 13.697 hybrid contribution 0.464 0.799 1.516 1.775 sum -0.170 2.289 -12.085 12.301 Atomic orbital electron populations 1.21305 0.96599 0.98179 1.00469 1.21385 0.95885 0.98076 0.98735 1.18936 0.92527 0.91577 0.84898 0.99181 1.21347 1.31613 1.12119 0.91022 0.92275 1.25495 0.95343 0.95617 1.01161 1.69988 1.38377 1.24148 1.22701 0.85746 0.78716 0.78902 0.79042 1.20195 1.21468 1.19668 1.60485 1.46953 1.17243 1.06485 1.20034 0.89471 1.02309 0.81985 0.87233 1.22407 0.97704 0.98774 1.03837 1.29147 0.89490 0.83459 0.97869 1.71904 1.23409 1.28096 1.01160 1.26719 0.92797 0.90515 1.01054 1.20343 1.04691 1.02323 0.84337 1.74582 1.22450 1.21028 0.94815 1.85249 1.45955 1.43916 1.23452 0.93544 0.94691 0.95059 0.91909 0.96004 0.93025 0.83454 0.90670 0.90468 0.90881 0.87505 0.88077 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.74 9.45 71.98 0.68 -4.06 16 2 C -0.10 -4.73 5.55 30.59 0.17 -4.56 16 3 C 0.23 10.44 2.11 44.17 0.09 10.54 16 4 H -0.01 -0.46 7.14 -2.38 -0.02 -0.48 16 5 C -0.52 -26.22 7.31 25.60 0.19 -26.04 16 6 H 0.06 2.93 7.61 -2.91 -0.02 2.91 16 7 C 0.02 1.22 5.30 84.66 0.45 1.67 16 8 N -0.91 -49.56 11.34 21.45 0.24 -49.31 16 9 Si 0.95 41.65 29.54 68.60 2.03 43.67 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 N -0.68 -26.07 5.29 -477.15 -2.52 -28.59 16 14 C 0.18 5.77 2.93 44.17 0.13 5.89 16 15 H 0.11 3.80 7.15 -2.39 -0.02 3.79 16 16 C -0.17 -4.60 9.13 71.98 0.66 -3.95 16 17 C 0.22 7.36 7.35 88.38 0.65 8.01 16 18 N -0.51 -16.74 11.55 -303.18 -3.50 -20.24 16 19 C 0.16 4.73 8.22 138.46 1.14 5.87 16 20 C -0.06 -1.06 10.51 71.24 0.75 -0.31 16 21 N -0.42 -13.59 12.16 -60.31 -0.73 -14.33 16 22 O 0.07 2.28 11.31 74.83 0.85 3.12 16 23 H 0.05 1.99 7.52 -2.39 -0.02 1.97 16 24 H 0.03 1.63 7.36 -2.39 -0.02 1.62 16 25 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.06 3.26 6.14 -2.39 -0.01 3.25 16 27 H 0.02 0.93 7.45 -2.39 -0.02 0.92 16 28 H 0.26 13.68 8.31 -92.70 -0.77 12.90 16 29 H 0.35 12.86 7.94 -89.70 -0.71 12.15 16 30 H 0.07 2.21 7.46 -2.39 -0.02 2.19 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 33 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -57.83 293.28 1.64 -56.19 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.38 Total: 16.42 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 4.90 Total: -6.93 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -6.51 Total: -112.48 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.85 Total: 3.12 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -57.83 1.64 -56.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594011617.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.680 kcal (2) G-P(sol) polarization free energy of solvation -57.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds