Wall clock time and date at job start Sun Mar 29 2020 22:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29939 * 126.28707 * 2 1 4 4 O 1.21301 * 110.24820 * 179.72784 * 3 2 1 5 5 C 1.33635 * 109.81228 * 0.46466 * 4 3 2 6 6 C 1.50706 * 126.55435 * 179.80380 * 5 4 3 7 7 N 1.46897 * 109.46900 * 269.69103 * 6 5 4 8 8 C 1.46901 * 111.00116 * 293.94903 * 7 6 5 9 9 C 1.46903 * 111.00174 * 169.99867 * 7 6 5 10 10 C 1.52996 * 109.47463 * 189.99544 * 9 7 6 11 11 C 1.52994 * 109.47193 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47310 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99848 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00104 * 180.02562 * 12 11 10 15 15 N 1.31521 * 120.00237 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99880 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47197 * 59.99956 * 16 14 12 18 18 H 1.48501 * 109.46827 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46845 * 299.99303 * 16 14 12 20 20 N 1.31133 * 106.89680 * 359.54056 * 5 4 3 21 21 H 1.09001 * 109.46900 * 269.98097 * 1 2 3 22 22 H 1.08998 * 109.46698 * 29.97863 * 1 2 3 23 23 H 1.09004 * 109.47034 * 149.97757 * 1 2 3 24 24 H 1.09000 * 109.46646 * 29.68211 * 6 5 4 25 25 H 1.09000 * 109.47248 * 149.68929 * 6 5 4 26 26 H 1.09006 * 109.46998 * 59.99689 * 8 7 6 27 27 H 1.08999 * 109.47622 * 180.02562 * 8 7 6 28 28 H 1.09003 * 109.47363 * 300.00759 * 8 7 6 29 29 H 1.09000 * 109.46567 * 309.99872 * 9 7 6 30 30 H 1.09007 * 109.46953 * 69.99183 * 9 7 6 31 31 H 1.09002 * 109.47293 * 300.00256 * 10 9 7 32 32 H 1.09004 * 109.46872 * 60.00047 * 10 9 7 33 33 H 1.09002 * 109.47438 * 300.00447 * 11 10 9 34 34 H 1.08996 * 109.47177 * 60.00146 * 11 10 9 35 35 H 0.96994 * 120.00236 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0054 5 6 3.5299 -0.6212 -0.0007 6 6 4.7970 -1.4371 -0.0012 7 7 5.2082 -1.7019 -1.3864 8 6 4.2357 -2.5663 -2.0682 9 6 6.5553 -2.2860 -1.4331 10 6 7.0480 -2.3168 -2.8812 11 6 8.4512 -2.9246 -2.9298 12 6 8.9368 -2.9543 -4.3561 13 1 8.3076 -2.5770 -5.1487 14 6 10.1842 -3.4631 -4.6492 15 7 10.9502 -3.9231 -3.6841 16 14 10.7863 -3.4993 -6.4172 17 1 10.8281 -2.1154 -6.9543 18 1 12.1482 -4.0894 -6.4642 19 1 9.8615 -4.3214 -7.2383 20 7 2.3030 -1.0841 -0.0004 21 1 -0.3633 -0.0003 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 5.5844 -0.8855 0.5124 25 1 4.6208 -2.3822 0.5125 26 1 3.2612 -2.0780 -2.0802 27 1 4.5647 -2.7468 -3.0916 28 1 4.1596 -3.5160 -1.5386 29 1 7.2342 -1.6821 -0.8310 30 1 6.5249 -3.3015 -1.0380 31 1 6.3690 -2.9206 -3.4833 32 1 7.0784 -1.3013 -3.2763 33 1 9.1299 -2.3204 -2.3278 34 1 8.4212 -3.9399 -2.5346 35 1 11.8276 -4.2815 -3.8904 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594052981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:54 Heat of formation + Delta-G solvation = 60.919254 kcal Electronic energy + Delta-G solvation = -16499.087607 eV Core-core repulsion = 13728.393573 eV Total energy + Delta-G solvation = -2770.694034 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.65559 -37.94116 -36.12032 -34.06629 -32.98031 -31.27130 -29.47050 -28.05639 -27.14241 -24.65512 -23.57981 -22.07976 -20.99270 -19.95406 -18.23509 -17.44251 -16.34346 -15.55338 -15.41912 -15.23867 -14.39550 -14.20359 -13.84337 -13.76925 -13.35179 -12.81790 -12.59236 -12.30209 -11.94742 -11.78049 -11.57352 -11.55195 -11.24021 -11.13427 -10.81496 -10.59717 -10.56324 -10.06031 -9.64506 -9.36371 -9.09494 -8.36725 -8.33171 -5.99688 -4.01789 1.02891 2.07432 2.70879 3.34393 3.38559 3.41317 3.48359 3.89188 4.08671 4.47372 4.75592 4.95697 5.10134 5.15730 5.21946 5.35868 5.37741 5.43721 5.56105 5.71190 5.75545 5.83908 5.90254 6.07985 6.22719 6.61741 6.64352 6.96268 7.15339 7.19164 7.67395 7.81607 8.00346 8.07186 8.43419 9.05098 9.62338 11.11719 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059258 B = 0.003652 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.399983 B = 7665.296945 C = 7771.163940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.163 3.837 3 N -0.389 5.389 4 O 0.084 5.916 5 C 0.205 3.795 6 C 0.140 3.860 7 N -0.539 5.539 8 C 0.020 3.980 9 C 0.058 3.942 10 C -0.106 4.106 11 C 0.023 3.977 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 N -0.484 5.484 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.113 0.887 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.014 0.986 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.020 5.124 9.135 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 N -0.098 5.098 4 O 0.027 5.973 5 C -0.016 4.016 6 C 0.010 3.990 7 N -0.265 5.265 8 C -0.128 4.128 9 C -0.069 4.069 10 C -0.144 4.144 11 C -0.015 4.015 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 N -0.220 5.220 21 H 0.105 0.895 22 H 0.104 0.896 23 H 0.109 0.891 24 H 0.131 0.869 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.033 0.967 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.466 6.003 8.927 20.513 hybrid contribution 0.515 -0.864 -0.560 1.152 sum -16.951 5.139 8.367 19.589 Atomic orbital electron populations 1.20109 0.83109 1.04589 1.04091 1.25878 1.00525 0.83712 1.00842 1.74634 0.89537 1.24068 1.21549 1.85301 1.22077 1.24847 1.65102 1.28733 0.96624 0.82048 0.94219 1.20594 0.88395 0.96832 0.93198 1.62060 1.04172 1.48500 1.11739 1.22508 0.95426 0.94656 1.00256 1.22386 0.86327 0.97189 1.00961 1.21685 0.99370 1.01265 0.92053 1.19067 0.89625 0.95744 0.97071 1.21208 1.00908 1.40451 0.93256 0.92717 1.25018 0.96866 0.95431 0.97132 1.69951 1.10252 1.41667 1.31742 0.86659 0.77801 0.78353 0.85195 1.20210 1.21318 1.20269 1.71922 0.99793 1.29429 1.20827 0.89492 0.89615 0.89115 0.86873 0.89969 0.91972 0.90057 0.95057 0.90529 0.94473 0.93233 0.92392 0.96484 0.96728 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.16 2.00 8.22 -156.38 -1.28 0.71 16 3 N -0.39 -5.36 12.16 30.89 0.38 -4.98 16 4 O 0.08 1.16 11.31 18.12 0.20 1.36 16 5 C 0.20 2.60 7.13 -13.05 -0.09 2.51 16 6 C 0.14 1.57 5.59 -4.97 -0.03 1.55 16 7 N -0.54 -7.58 4.75 -244.36 -1.16 -8.74 16 8 C 0.02 0.27 9.17 60.07 0.55 0.82 16 9 C 0.06 0.91 4.96 -3.82 -0.02 0.89 16 10 C -0.11 -2.10 5.08 -26.74 -0.14 -2.24 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 16 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 N -0.48 -6.34 10.85 -9.87 -0.11 -6.45 16 21 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.11 1.05 7.93 -51.93 -0.41 0.64 16 25 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 26 H 0.06 0.85 6.75 -51.93 -0.35 0.50 16 27 H 0.08 1.17 6.30 -51.93 -0.33 0.85 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 1.15 7.93 -51.93 -0.41 0.73 16 30 H 0.04 0.57 8.12 -51.92 -0.42 0.15 16 31 H 0.05 0.98 6.47 -51.93 -0.34 0.64 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 298.08 15.07 4.49 4.49 Total: -1.00 -31.41 298.08 -6.84 -38.26 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: -5.18 Total: -5.66 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.18 Total: -8.85 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.16 Total: -46.19 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.20 Total: 1.36 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.41 -6.84 -38.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594052981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.175 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds