Wall clock time and date at job start Sun Mar 29 2020 22:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29939 * 126.28707 * 2 1 4 4 O 1.21301 * 110.24820 * 179.72784 * 3 2 1 5 5 C 1.33635 * 109.81228 * 0.46466 * 4 3 2 6 6 C 1.50706 * 126.55435 * 179.80380 * 5 4 3 7 7 N 1.46897 * 109.46900 * 269.69103 * 6 5 4 8 8 C 1.46901 * 111.00116 * 293.94903 * 7 6 5 9 9 C 1.46903 * 111.00174 * 169.99867 * 7 6 5 10 10 C 1.52996 * 109.47463 * 189.99544 * 9 7 6 11 11 C 1.52994 * 109.47193 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47310 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99848 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00104 * 180.02562 * 12 11 10 15 15 N 1.31521 * 120.00237 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99880 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47197 * 59.99956 * 16 14 12 18 18 H 1.48501 * 109.46827 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46845 * 299.99303 * 16 14 12 20 20 N 1.31133 * 106.89680 * 359.54056 * 5 4 3 21 21 H 1.09001 * 109.46900 * 269.98097 * 1 2 3 22 22 H 1.08998 * 109.46698 * 29.97863 * 1 2 3 23 23 H 1.09004 * 109.47034 * 149.97757 * 1 2 3 24 24 H 1.09000 * 109.46646 * 29.68211 * 6 5 4 25 25 H 1.09000 * 109.47248 * 149.68929 * 6 5 4 26 26 H 1.09006 * 109.46998 * 59.99689 * 8 7 6 27 27 H 1.08999 * 109.47622 * 180.02562 * 8 7 6 28 28 H 1.09003 * 109.47363 * 300.00759 * 8 7 6 29 29 H 1.09000 * 109.46567 * 309.99872 * 9 7 6 30 30 H 1.09007 * 109.46953 * 69.99183 * 9 7 6 31 31 H 1.09002 * 109.47293 * 300.00256 * 10 9 7 32 32 H 1.09004 * 109.46872 * 60.00047 * 10 9 7 33 33 H 1.09002 * 109.47438 * 300.00447 * 11 10 9 34 34 H 1.08996 * 109.47177 * 60.00146 * 11 10 9 35 35 H 0.96994 * 120.00236 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0054 5 6 3.5299 -0.6212 -0.0007 6 6 4.7970 -1.4371 -0.0012 7 7 5.2082 -1.7019 -1.3864 8 6 4.2357 -2.5663 -2.0682 9 6 6.5553 -2.2860 -1.4331 10 6 7.0480 -2.3168 -2.8812 11 6 8.4512 -2.9246 -2.9298 12 6 8.9368 -2.9543 -4.3561 13 1 8.3076 -2.5770 -5.1487 14 6 10.1842 -3.4631 -4.6492 15 7 10.9502 -3.9231 -3.6841 16 14 10.7863 -3.4993 -6.4172 17 1 10.8281 -2.1154 -6.9543 18 1 12.1482 -4.0894 -6.4642 19 1 9.8615 -4.3214 -7.2383 20 7 2.3030 -1.0841 -0.0004 21 1 -0.3633 -0.0003 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 5.5844 -0.8855 0.5124 25 1 4.6208 -2.3822 0.5125 26 1 3.2612 -2.0780 -2.0802 27 1 4.5647 -2.7468 -3.0916 28 1 4.1596 -3.5160 -1.5386 29 1 7.2342 -1.6821 -0.8310 30 1 6.5249 -3.3015 -1.0380 31 1 6.3690 -2.9206 -3.4833 32 1 7.0784 -1.3013 -3.2763 33 1 9.1299 -2.3204 -2.3278 34 1 8.4212 -3.9399 -2.5346 35 1 11.8276 -4.2815 -3.8904 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594052981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:54 Heat of formation + Delta-G solvation = 38.826972 kcal Electronic energy + Delta-G solvation = -16500.045600 eV Core-core repulsion = 13728.393573 eV Total energy + Delta-G solvation = -2771.652027 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.61639 -39.09474 -37.07173 -35.79047 -34.31973 -32.95251 -30.24325 -29.18063 -28.67164 -26.20573 -24.62921 -23.55303 -22.03815 -21.50793 -19.22870 -18.47987 -18.36048 -16.73622 -16.66159 -16.43568 -16.17822 -15.30350 -14.97112 -14.48798 -14.45959 -14.21226 -13.69445 -13.57803 -13.43217 -13.16635 -12.85726 -12.73738 -12.59633 -12.41779 -12.34729 -12.24819 -12.08895 -11.40384 -11.33367 -11.15957 -10.94162 -10.50798 -9.46326 -8.17474 -6.27508 0.05539 1.14470 1.41941 1.44392 1.52244 1.76714 2.43032 2.61503 2.97794 3.10000 3.15977 3.87487 4.05843 4.20221 4.28239 4.39088 4.53099 4.57485 4.57800 4.59381 4.74700 4.77014 4.88204 4.94272 5.04698 5.09337 5.11911 5.29464 5.55629 5.77830 5.89228 5.92912 5.94912 6.30756 6.89531 7.11551 7.41423 8.93983 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059258 B = 0.003652 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.399983 B = 7665.296945 C = 7771.163940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.162 3.838 3 N -0.412 5.412 4 O 0.069 5.931 5 C 0.205 3.795 6 C 0.141 3.859 7 N -0.549 5.549 8 C 0.024 3.976 9 C 0.071 3.929 10 C -0.093 4.093 11 C 0.026 3.974 12 C -0.544 4.544 13 H 0.056 0.944 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.961 3.039 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.268 1.268 20 N -0.497 5.497 21 H 0.105 0.895 22 H 0.096 0.904 23 H 0.101 0.899 24 H 0.135 0.865 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.050 0.950 33 H -0.003 1.003 34 H -0.006 1.006 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.064 5.216 9.019 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 N -0.124 5.124 4 O 0.015 5.985 5 C -0.016 4.016 6 C 0.012 3.988 7 N -0.275 5.275 8 C -0.124 4.124 9 C -0.056 4.056 10 C -0.131 4.131 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.075 0.925 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.785 3.215 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.193 1.193 20 N -0.233 5.233 21 H 0.124 0.876 22 H 0.115 0.885 23 H 0.120 0.880 24 H 0.153 0.847 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.015 0.985 34 H 0.013 0.987 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.512 6.102 8.814 21.391 hybrid contribution 0.788 -0.895 -0.492 1.290 sum -17.723 5.207 8.322 20.260 Atomic orbital electron populations 1.20345 0.80302 1.05659 1.05614 1.26664 1.02159 0.83062 0.99158 1.74634 0.89736 1.24940 1.23063 1.85273 1.22309 1.25297 1.65618 1.28977 0.97032 0.81887 0.93662 1.20742 0.88592 0.97783 0.91687 1.61891 1.03382 1.48403 1.13811 1.22443 0.95149 0.95062 0.99722 1.22092 0.87531 0.97986 0.97997 1.21427 0.96370 1.00102 0.95181 1.18959 0.92295 0.94564 0.95301 1.21687 1.01386 1.40390 0.94742 0.92539 1.25923 0.97105 0.94958 1.01677 1.70072 1.10675 1.42470 1.34017 0.85567 0.77367 0.78753 0.79769 1.19352 1.20814 1.19291 1.71951 1.00105 1.29910 1.21336 0.87622 0.88528 0.88014 0.84709 0.88190 0.92010 0.91250 0.94132 0.89552 0.93934 0.93214 0.93129 0.98493 0.98718 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 10.51 71.24 0.75 -0.07 16 2 C 0.16 3.73 8.22 138.47 1.14 4.87 16 3 N -0.41 -10.97 12.16 -60.36 -0.73 -11.71 16 4 O 0.07 1.84 11.31 74.90 0.85 2.69 16 5 C 0.21 4.92 7.13 88.38 0.63 5.55 16 6 C 0.14 2.88 5.59 85.56 0.48 3.36 16 7 N -0.55 -14.56 4.75 -927.02 -4.41 -18.97 16 8 C 0.02 0.63 9.17 127.69 1.17 1.80 16 9 C 0.07 2.14 4.96 86.30 0.43 2.57 16 10 C -0.09 -3.67 5.08 30.59 0.16 -3.52 16 11 C 0.03 1.35 4.97 29.85 0.15 1.50 16 12 C -0.54 -30.82 9.11 25.60 0.23 -30.58 16 13 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 16 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 N -0.50 -12.25 10.85 -303.23 -3.29 -15.54 16 21 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.14 2.16 7.93 -2.39 -0.02 2.14 16 25 H 0.10 1.74 8.12 -2.39 -0.02 1.72 16 26 H 0.06 1.61 6.75 -2.38 -0.02 1.59 16 27 H 0.07 1.95 6.30 -2.39 -0.02 1.93 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 2.46 7.93 -2.39 -0.02 2.44 16 30 H 0.04 1.25 8.12 -2.38 -0.02 1.23 16 31 H 0.05 1.95 6.47 -2.39 -0.02 1.93 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -67.03 298.08 1.39 -65.64 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: 1.07 Total: 1.58 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 5.59 Total: -13.99 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -8.15 Total: -102.11 kcal Atomic # 8 Polarization: 1.84 SS G_CDS: 0.85 Total: 2.69 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.03 1.39 -65.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594052981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.468 kcal (2) G-P(sol) polarization free energy of solvation -67.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds