Wall clock time and date at job start Sun Mar 29 2020 22:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00019 * 2 1 4 4 C 1.53006 * 109.47030 * 59.99929 * 3 2 1 5 5 C 1.52999 * 109.47371 * 300.00283 * 3 2 1 6 6 C 1.50694 * 109.47343 * 179.97438 * 3 2 1 7 7 C 1.35352 * 126.74848 * 359.71298 * 6 3 2 8 8 N 1.35316 * 106.17299 * 180.26193 * 7 6 3 9 9 C 1.46508 * 125.86875 * 179.97438 * 8 7 6 10 10 C 1.52991 * 109.47158 * 125.01551 * 9 8 7 11 11 C 1.50702 * 109.47098 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99534 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00361 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99592 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00244 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46807 * 59.99936 * 15 13 11 17 17 H 1.48503 * 109.47267 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47213 * 300.00139 * 15 13 11 19 19 N 1.28713 * 108.26344 * 359.97438 * 8 7 6 20 20 N 1.28626 * 110.18105 * 0.02562 * 19 8 7 21 21 H 1.09002 * 109.47012 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47145 * 299.99780 * 1 2 3 23 23 H 1.09002 * 109.46824 * 59.99897 * 1 2 3 24 24 H 1.09000 * 109.47162 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.46962 * 300.00162 * 4 3 2 26 26 H 1.09005 * 109.47088 * 59.99691 * 4 3 2 27 27 H 1.09001 * 109.47085 * 299.99886 * 5 3 2 28 28 H 1.09002 * 109.47234 * 59.99462 * 5 3 2 29 29 H 1.09000 * 109.47153 * 179.97438 * 5 3 2 30 30 H 1.07994 * 126.91730 * 0.26231 * 7 6 3 31 31 H 1.08999 * 109.47043 * 245.01999 * 9 8 7 32 32 H 1.09006 * 109.46858 * 5.01159 * 9 8 7 33 33 H 1.09003 * 109.47123 * 299.99861 * 10 9 8 34 34 H 1.08997 * 109.47416 * 59.99882 * 10 9 8 35 35 H 0.97008 * 119.99534 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5588 2.0648 -1.2492 6 6 3.5125 1.1865 0.0006 7 6 4.2342 0.0414 0.0066 8 7 5.5346 0.4155 0.0106 9 6 6.6878 -0.4881 0.0181 10 6 7.6044 -0.1549 -1.1607 11 6 8.7903 -1.0848 -1.1533 12 1 8.8812 -1.8379 -0.3844 13 6 9.7592 -0.9743 -2.1280 14 7 9.6486 -0.0570 -3.0640 15 14 11.2294 -2.1265 -2.1185 16 1 10.7591 -3.5300 -2.2376 17 1 12.1191 -1.8032 -3.2627 18 1 11.9791 -1.9619 -0.8472 19 7 5.5843 1.7017 0.0067 20 7 4.3951 2.1918 0.0009 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 2.0025 3.0603 1.2495 25 1 0.4721 2.1507 1.2493 26 1 1.8803 1.5237 2.1393 27 1 1.8804 1.5239 -2.1392 28 1 0.4722 2.1508 -1.2492 29 1 2.0018 3.0607 -1.2489 30 1 3.8496 -0.9677 0.0078 31 1 7.2377 -0.3676 0.9514 32 1 6.3427 -1.5183 -0.0698 33 1 7.0544 -0.2754 -2.0940 34 1 7.9495 0.8752 -1.0728 35 1 10.3301 0.0205 -3.7500 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594649187.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:40 Heat of formation + Delta-G solvation = 40.323071 kcal Electronic energy + Delta-G solvation = -16957.566167 eV Core-core repulsion = 14185.979016 eV Total energy + Delta-G solvation = -2771.587151 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.76904 -38.86997 -35.09324 -33.25491 -32.50001 -30.23417 -29.51986 -27.40618 -27.10179 -25.48912 -22.85695 -22.22133 -20.93645 -19.39495 -17.23402 -16.61266 -15.94732 -15.78804 -15.29160 -15.19524 -14.55955 -14.13108 -13.64568 -13.45664 -13.21735 -12.61031 -12.42997 -11.98657 -11.93166 -11.69364 -11.42849 -11.26269 -11.11355 -10.88125 -10.83269 -10.45752 -10.28080 -10.00651 -9.78372 -9.43140 -9.24823 -8.70351 -8.50623 -6.15058 -4.21879 2.17587 2.91715 3.01651 3.25753 3.31189 3.32846 3.52097 4.34281 4.57028 4.85514 5.01526 5.18109 5.19180 5.21085 5.25738 5.36676 5.47994 5.52127 5.59773 5.76488 5.78321 5.84458 5.89835 6.06666 6.21857 6.23662 6.34996 6.53106 7.08057 7.16567 7.42932 7.52003 7.80167 8.12113 8.83114 9.03909 9.43522 10.95982 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.050099 B = 0.004500 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.754220 B = 6220.710075 C = 6343.201392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.379 6.379 3 C 0.208 3.792 4 C -0.169 4.169 5 C -0.171 4.171 6 C -0.031 4.031 7 C -0.032 4.032 8 N -0.272 5.272 9 C 0.112 3.888 10 C 0.015 3.985 11 C -0.533 4.533 12 H 0.060 0.940 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 N -0.072 5.072 20 N -0.276 5.276 21 H 0.085 0.915 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.187 0.813 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.024 0.976 34 H 0.038 0.962 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.189 -0.186 6.345 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.298 6.298 3 C 0.167 3.833 4 C -0.227 4.227 5 C -0.228 4.228 6 C -0.170 4.170 7 C -0.184 4.184 8 N -0.065 5.065 9 C -0.007 4.007 10 C -0.023 4.023 11 C -0.571 4.571 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.524 5.524 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 N -0.052 5.052 20 N -0.143 5.143 21 H 0.104 0.896 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.204 0.796 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.009 0.940 6.187 17.189 hybrid contribution 0.074 -1.537 -0.141 1.545 sum -15.935 -0.597 6.046 17.054 Atomic orbital electron populations 1.22785 0.81113 1.02664 1.00292 1.87895 1.19638 1.27090 1.95150 1.19129 0.85965 0.83054 0.95176 1.22347 1.01079 1.01690 0.97583 1.22353 1.01025 1.01756 0.97701 1.21160 0.95184 0.90153 1.10474 1.23318 0.83612 1.02036 1.09427 1.47923 1.07936 1.06717 1.43932 1.22745 0.83305 0.90302 1.04367 1.19399 0.93125 0.99073 0.90672 1.20909 1.06054 1.17520 1.12664 0.92149 1.24996 0.98300 0.95537 0.95177 1.69972 1.34974 1.33020 1.14453 0.86535 0.82098 0.80931 0.77738 1.20074 1.21112 1.20015 1.78312 1.16528 0.91415 1.18953 1.74946 0.94789 1.26580 1.18000 0.89641 0.93713 0.93642 0.90548 0.92004 0.91856 0.91652 0.92017 0.90521 0.79622 0.89205 0.88725 0.95805 0.94415 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.21 101.05 1.03 1.27 16 2 O -0.38 -4.78 9.73 -35.23 -0.34 -5.12 16 3 C 0.21 2.78 1.10 -91.77 -0.10 2.67 16 4 C -0.17 -1.93 8.23 37.16 0.31 -1.62 16 5 C -0.17 -2.06 8.23 37.16 0.31 -1.75 16 6 C -0.03 -0.53 5.73 -82.78 -0.47 -1.00 16 7 C -0.03 -0.55 10.91 -17.04 -0.19 -0.73 16 8 N -0.27 -5.36 3.44 -61.26 -0.21 -5.57 16 9 C 0.11 2.20 6.39 -4.04 -0.03 2.17 16 10 C 0.02 0.38 5.10 -27.89 -0.14 0.24 16 11 C -0.53 -14.29 9.11 -34.44 -0.31 -14.60 16 12 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 15 Si 0.90 20.88 29.54 -169.99 -5.02 15.85 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 N -0.07 -1.57 12.91 60.35 0.78 -0.79 16 20 N -0.28 -5.49 12.41 33.29 0.41 -5.08 16 21 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.04 0.33 6.42 -51.93 -0.33 0.00 16 23 H 0.05 0.35 6.42 -51.93 -0.33 0.02 16 24 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.19 2.65 7.93 -52.49 -0.42 2.24 16 31 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 32 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 33 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.04 1.05 8.12 -51.93 -0.42 0.63 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 296.19 15.07 4.46 4.46 Total: -1.00 -31.20 296.19 -3.98 -35.18 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.10 Total: -1.76 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 0.30 Total: -11.70 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 1.72 Total: -36.91 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.34 Total: -5.12 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.20 -3.98 -35.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594649187.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.504 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds