Wall clock time and date at job start Sun Mar 29 2020 22:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00019 * 2 1 4 4 C 1.53006 * 109.47030 * 59.99929 * 3 2 1 5 5 C 1.52999 * 109.47371 * 300.00283 * 3 2 1 6 6 C 1.50694 * 109.47343 * 179.97438 * 3 2 1 7 7 C 1.35352 * 126.74848 * 359.71298 * 6 3 2 8 8 N 1.35316 * 106.17299 * 180.26193 * 7 6 3 9 9 C 1.46508 * 125.86875 * 179.97438 * 8 7 6 10 10 C 1.52991 * 109.47158 * 125.01551 * 9 8 7 11 11 C 1.50702 * 109.47098 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99534 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00361 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99592 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00244 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46807 * 59.99936 * 15 13 11 17 17 H 1.48503 * 109.47267 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47213 * 300.00139 * 15 13 11 19 19 N 1.28713 * 108.26344 * 359.97438 * 8 7 6 20 20 N 1.28626 * 110.18105 * 0.02562 * 19 8 7 21 21 H 1.09002 * 109.47012 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47145 * 299.99780 * 1 2 3 23 23 H 1.09002 * 109.46824 * 59.99897 * 1 2 3 24 24 H 1.09000 * 109.47162 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.46962 * 300.00162 * 4 3 2 26 26 H 1.09005 * 109.47088 * 59.99691 * 4 3 2 27 27 H 1.09001 * 109.47085 * 299.99886 * 5 3 2 28 28 H 1.09002 * 109.47234 * 59.99462 * 5 3 2 29 29 H 1.09000 * 109.47153 * 179.97438 * 5 3 2 30 30 H 1.07994 * 126.91730 * 0.26231 * 7 6 3 31 31 H 1.08999 * 109.47043 * 245.01999 * 9 8 7 32 32 H 1.09006 * 109.46858 * 5.01159 * 9 8 7 33 33 H 1.09003 * 109.47123 * 299.99861 * 10 9 8 34 34 H 1.08997 * 109.47416 * 59.99882 * 10 9 8 35 35 H 0.97008 * 119.99534 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5588 2.0648 -1.2492 6 6 3.5125 1.1865 0.0006 7 6 4.2342 0.0414 0.0066 8 7 5.5346 0.4155 0.0106 9 6 6.6878 -0.4881 0.0181 10 6 7.6044 -0.1549 -1.1607 11 6 8.7903 -1.0848 -1.1533 12 1 8.8812 -1.8379 -0.3844 13 6 9.7592 -0.9743 -2.1280 14 7 9.6486 -0.0570 -3.0640 15 14 11.2294 -2.1265 -2.1185 16 1 10.7591 -3.5300 -2.2376 17 1 12.1191 -1.8032 -3.2627 18 1 11.9791 -1.9619 -0.8472 19 7 5.5843 1.7017 0.0067 20 7 4.3951 2.1918 0.0009 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 2.0025 3.0603 1.2495 25 1 0.4721 2.1507 1.2493 26 1 1.8803 1.5237 2.1393 27 1 1.8804 1.5239 -2.1392 28 1 0.4722 2.1508 -1.2492 29 1 2.0018 3.0607 -1.2489 30 1 3.8496 -0.9677 0.0078 31 1 7.2377 -0.3676 0.9514 32 1 6.3427 -1.5183 -0.0698 33 1 7.0544 -0.2754 -2.0940 34 1 7.9495 0.8752 -1.0728 35 1 10.3301 0.0205 -3.7500 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594649187.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:40 Heat of formation + Delta-G solvation = 19.073586 kcal Electronic energy + Delta-G solvation = -16958.487614 eV Core-core repulsion = 14185.979016 eV Total energy + Delta-G solvation = -2772.508598 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.22992 -39.80921 -36.74840 -34.92656 -33.86256 -31.86837 -31.01644 -28.32357 -27.86374 -27.36141 -24.38543 -23.78228 -22.40646 -20.66238 -18.91643 -18.06250 -17.35550 -17.16102 -16.50382 -16.41386 -16.04544 -15.50626 -15.18922 -14.50123 -14.32982 -14.19818 -13.61347 -13.45622 -13.06731 -12.93953 -12.86381 -12.64336 -12.50162 -12.34258 -12.29433 -12.08768 -11.86168 -11.47747 -11.44938 -10.93024 -10.65707 -10.62210 -10.04485 -8.26290 -6.41008 0.71714 1.41644 1.45919 1.50555 1.52919 1.57857 2.39786 2.56041 3.09000 3.43545 3.83163 3.91671 3.94589 4.08266 4.24957 4.36466 4.53620 4.54660 4.56856 4.68845 4.72627 4.81305 4.86138 4.86794 4.95576 5.17459 5.23393 5.29034 5.30749 5.44627 5.58146 5.77078 6.04505 6.28396 6.74932 7.30305 7.55289 8.86233 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.050099 B = 0.004500 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.754220 B = 6220.710075 C = 6343.201392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.396 6.396 3 C 0.207 3.793 4 C -0.164 4.164 5 C -0.168 4.168 6 C -0.033 4.033 7 C -0.028 4.028 8 N -0.279 5.279 9 C 0.124 3.876 10 C 0.024 3.976 11 C -0.545 4.545 12 H 0.081 0.919 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.975 3.025 16 H -0.260 1.260 17 H -0.288 1.288 18 H -0.264 1.264 19 N -0.122 5.122 20 N -0.291 5.291 21 H 0.101 0.899 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.103 0.897 32 H 0.128 0.872 33 H -0.009 1.009 34 H -0.002 1.002 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.619 -1.996 7.427 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.315 6.315 3 C 0.166 3.834 4 C -0.222 4.222 5 C -0.226 4.226 6 C -0.172 4.172 7 C -0.180 4.180 8 N -0.072 5.072 9 C 0.005 3.995 10 C -0.014 4.014 11 C -0.583 4.583 12 H 0.099 0.901 13 C -0.197 4.197 14 N -0.573 5.573 15 Si 0.799 3.201 16 H -0.185 1.185 17 H -0.214 1.214 18 H -0.189 1.189 19 N -0.101 5.101 20 N -0.157 5.157 21 H 0.119 0.881 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.234 0.766 31 H 0.121 0.879 32 H 0.146 0.854 33 H 0.009 0.991 34 H 0.016 0.984 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.453 -0.864 7.289 18.934 hybrid contribution 0.378 -0.964 -0.486 1.144 sum -17.075 -1.829 6.803 18.471 Atomic orbital electron populations 1.23064 0.78911 1.04211 1.01486 1.87856 1.21959 1.26328 1.95359 1.19200 0.83646 0.84062 0.96495 1.22307 1.03008 1.00600 0.96283 1.22334 1.03074 1.00639 0.96518 1.21902 0.97134 0.89375 1.08829 1.23908 0.82485 1.03554 1.08049 1.47884 1.08767 1.06266 1.44328 1.22528 0.82998 0.91728 1.02211 1.19143 0.93833 0.96760 0.91684 1.21427 1.06289 1.17752 1.12848 0.90079 1.26052 1.01752 0.97185 0.94725 1.70139 1.36291 1.35325 1.15557 0.85350 0.77933 0.78995 0.77866 1.18482 1.21395 1.18862 1.78301 1.17677 0.92585 1.21525 1.74881 0.94979 1.27668 1.18150 0.88069 0.92232 0.92637 0.91565 0.88894 0.92374 0.93082 0.88750 0.91616 0.76552 0.87931 0.85405 0.99087 0.98404 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.21 113.37 1.16 1.42 16 2 O -0.40 -8.93 9.73 -148.98 -1.45 -10.38 16 3 C 0.21 5.17 1.10 -11.54 -0.01 5.16 16 4 C -0.16 -3.40 8.23 71.98 0.59 -2.81 16 5 C -0.17 -3.80 8.23 71.98 0.59 -3.20 16 6 C -0.03 -1.10 5.73 41.59 0.24 -0.86 16 7 C -0.03 -0.93 10.91 83.49 0.91 -0.02 16 8 N -0.28 -11.03 3.44 -347.73 -1.20 -12.22 16 9 C 0.12 4.82 6.39 86.37 0.55 5.38 16 10 C 0.02 1.24 5.10 29.85 0.15 1.39 16 11 C -0.54 -29.21 9.11 25.60 0.23 -28.97 16 12 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 13 C 0.00 0.08 5.46 84.65 0.46 0.55 16 14 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 15 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 16 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 17 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 19 N -0.12 -5.45 12.91 37.02 0.48 -4.97 16 20 N -0.29 -11.77 12.41 -48.60 -0.60 -12.37 16 21 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.06 0.65 6.42 -2.39 -0.02 0.64 16 23 H 0.06 0.66 6.42 -2.39 -0.02 0.64 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 25 H 0.09 1.32 6.54 -2.39 -0.02 1.30 16 26 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.48 6.54 -2.39 -0.02 1.46 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.22 5.63 7.93 -2.91 -0.02 5.60 16 31 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 32 H 0.13 4.08 8.07 -2.38 -0.02 4.06 16 33 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.00 -0.15 8.12 -2.39 -0.02 -0.17 16 35 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -69.81 296.19 5.49 -64.32 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.07 Total: 9.53 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 4.88 Total: -21.98 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -1.04 Total: -86.07 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -1.45 Total: -10.38 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -69.81 5.49 -64.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594649187.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.394 kcal (2) G-P(sol) polarization free energy of solvation -69.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds