Wall clock time and date at job start Sun Mar 29 2020 22:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34232 * 116.99789 * 2 1 4 4 O 1.20818 * 119.99836 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99568 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.46604 * 179.97438 * 5 3 2 7 7 C 1.36936 * 119.99802 * 96.08487 * 6 5 3 8 8 H 1.08003 * 119.99691 * 163.38769 * 7 6 5 9 9 C 1.38813 * 120.00157 * 343.10872 * 7 6 5 10 10 N 1.31620 * 119.99955 * 336.27110 * 9 7 6 11 11 Si 1.86795 * 120.00028 * 156.26659 * 9 7 6 12 12 H 1.48509 * 109.47131 * 60.00037 * 11 9 7 13 13 H 1.48493 * 109.47165 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47387 * 300.00393 * 11 9 7 15 15 C 1.46501 * 120.00191 * 276.07808 * 6 5 3 16 16 C 1.52994 * 109.47377 * 270.00472 * 15 6 5 17 17 C 1.54640 * 111.03713 * 287.02180 * 16 15 6 18 18 C 1.51100 * 104.72529 * 217.33401 * 17 16 15 19 19 C 1.30533 * 111.10459 * 16.43451 * 18 17 16 20 20 C 1.51108 * 111.10395 * 0.02562 * 19 18 17 21 21 H 1.08999 * 109.47251 * 300.00582 * 1 2 3 22 22 H 1.09001 * 109.46906 * 60.00494 * 1 2 3 23 23 H 1.09000 * 109.46868 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46878 * 60.00312 * 5 3 2 25 25 H 1.08997 * 109.47132 * 299.99857 * 5 3 2 26 26 H 0.97001 * 119.99840 * 179.97438 * 10 9 7 27 27 H 1.09002 * 109.46691 * 30.00453 * 15 6 5 28 28 H 1.08999 * 109.47067 * 150.00154 * 15 6 5 29 29 H 1.09005 * 110.91633 * 51.03533 * 16 15 6 30 30 H 1.08999 * 110.38540 * 336.14523 * 17 16 15 31 31 H 1.09000 * 110.38107 * 98.52392 * 17 16 15 32 32 H 1.08001 * 124.44877 * 196.46331 * 18 17 16 33 33 H 1.08001 * 124.44704 * 180.02562 * 19 18 17 34 34 H 1.08999 * 110.38389 * 224.75203 * 20 19 18 35 35 H 1.08996 * 110.38585 * 102.36892 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2958 3.3014 1.1788 8 1 4.8494 4.2287 1.1695 9 6 3.8978 2.7428 2.3856 10 7 2.8673 1.9248 2.4241 11 14 4.8247 3.1518 3.9550 12 1 4.7627 4.6153 4.1994 13 1 4.2060 2.4321 5.0971 14 1 6.2425 2.7328 3.8160 15 6 4.0611 3.4195 -1.2622 16 6 5.4642 3.2702 -1.8535 17 6 6.4948 4.1011 -1.0541 18 6 7.4453 4.6406 -2.0974 19 6 6.9314 4.5490 -3.2938 20 6 5.5521 3.9336 -3.2478 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.9564 0.7806 -0.8892 25 1 3.9557 0.7809 0.8908 26 1 2.5894 1.5342 3.2674 27 1 3.3272 3.0218 -1.9632 28 1 3.8543 4.4739 -1.0789 29 1 5.7575 2.2214 -1.8997 30 1 5.9995 4.9197 -0.5320 31 1 7.0279 3.4658 -0.3468 32 1 8.4220 5.0481 -1.8816 33 1 7.4270 4.8708 -4.1978 34 1 5.4445 3.1841 -4.0318 35 1 4.7887 4.7047 -3.3508 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595340507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:29 Heat of formation + Delta-G solvation = -45.089532 kcal Electronic energy + Delta-G solvation = -17729.608752 eV Core-core repulsion = 14922.025081 eV Total energy + Delta-G solvation = -2807.583671 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.99142 -38.31307 -35.72048 -34.46354 -31.61649 -29.46801 -27.97042 -27.47671 -25.91203 -24.85360 -21.73540 -19.98562 -19.16263 -18.32896 -16.89826 -16.24617 -15.65891 -15.43453 -15.08790 -14.71027 -14.23818 -13.44895 -13.31576 -12.50697 -12.22560 -12.17202 -11.86457 -11.72647 -11.36568 -11.16053 -11.02833 -10.74515 -10.72293 -10.61445 -10.39266 -10.21802 -9.89868 -9.78658 -9.59197 -9.09175 -8.50358 -8.48711 -6.98324 -5.88370 -3.19539 2.59399 3.38114 3.44813 3.45571 3.87079 4.04747 4.49250 5.03371 5.14220 5.30548 5.48645 5.59650 5.75150 5.80288 5.81470 5.86569 6.09988 6.16154 6.19993 6.29837 6.33049 6.47436 6.54131 6.61000 6.65348 6.85158 6.92635 7.01305 7.09602 7.27293 7.72110 7.79227 8.23359 9.05797 9.38891 9.76078 10.20135 11.22595 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.018018 B = 0.009889 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.618023 B = 2830.743936 C = 4166.201400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.384 6.384 3 C 0.462 3.538 4 O -0.505 6.505 5 C 0.190 3.810 6 N -0.565 5.565 7 C -0.252 4.252 8 H 0.080 0.920 9 C 0.000 4.000 10 N -0.901 5.901 11 Si 0.904 3.096 12 H -0.284 1.284 13 H -0.292 1.292 14 H -0.283 1.283 15 C 0.158 3.842 16 C -0.106 4.106 17 C -0.085 4.085 18 C -0.164 4.164 19 C -0.181 4.181 20 C -0.096 4.096 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.110 0.890 26 H 0.256 0.744 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 -1.079 -8.179 8.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.301 6.301 3 C 0.302 3.698 4 O -0.389 6.389 5 C 0.060 3.940 6 N -0.283 5.283 7 C -0.381 4.381 8 H 0.098 0.902 9 C -0.198 4.198 10 N -0.545 5.545 11 Si 0.734 3.266 12 H -0.210 1.210 13 H -0.218 1.218 14 H -0.210 1.210 15 C 0.031 3.969 16 C -0.127 4.127 17 C -0.122 4.122 18 C -0.182 4.182 19 C -0.199 4.199 20 C -0.133 4.133 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.098 0.902 24 H 0.070 0.930 25 H 0.128 0.872 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.271 -0.817 -8.010 8.690 hybrid contribution 0.037 0.350 1.027 1.086 sum 3.308 -0.467 -6.982 7.740 Atomic orbital electron populations 1.22851 0.79911 1.01275 1.01240 1.86554 1.20941 1.36875 1.85780 1.25702 0.93658 0.80168 0.70303 1.90460 1.66676 1.36495 1.45302 1.20260 0.85306 0.87106 1.01363 1.43960 1.74854 1.06808 1.02725 1.19233 1.28423 1.07670 0.82785 0.90184 1.24832 0.96549 1.00511 0.97896 1.69906 1.23194 1.35554 1.25859 0.86321 0.79748 0.77803 0.82709 1.21026 1.21803 1.20965 1.20822 0.92110 0.96378 0.87570 1.22677 0.98284 0.98864 0.92869 1.21343 0.95046 0.99140 0.96655 1.23503 0.98891 0.99847 0.95914 1.23222 0.97227 1.02037 0.97415 1.21400 0.94851 0.99088 0.98010 0.92860 0.93670 0.90164 0.93028 0.87238 0.93341 0.94412 0.93017 0.90965 0.90563 0.91123 0.86846 0.86906 0.92050 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.42 10.57 -39.26 -0.41 -8.84 16 3 C 0.46 11.37 6.17 36.01 0.22 11.60 16 4 O -0.50 -14.01 15.81 -18.74 -0.30 -14.31 16 5 C 0.19 4.41 5.49 -5.19 -0.03 4.38 16 6 N -0.56 -13.53 2.02 -174.61 -0.35 -13.88 16 7 C -0.25 -6.60 9.09 -15.06 -0.14 -6.74 16 8 H 0.08 2.05 6.92 -52.48 -0.36 1.68 16 9 C 0.00 0.01 4.81 -17.43 -0.08 -0.08 16 10 N -0.90 -25.59 9.39 55.49 0.52 -25.07 16 11 Si 0.90 21.42 29.62 -169.99 -5.03 16.38 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.16 3.22 5.02 -4.04 -0.02 3.20 16 16 C -0.11 -1.82 3.37 -88.89 -0.30 -2.12 16 17 C -0.08 -1.44 5.57 -26.83 -0.15 -1.59 16 18 C -0.16 -2.36 10.78 -35.70 -0.38 -2.74 16 19 C -0.18 -2.47 10.78 -35.70 -0.38 -2.85 16 20 C -0.10 -1.39 6.38 -26.82 -0.17 -1.56 16 21 H 0.05 1.03 8.13 -51.93 -0.42 0.60 16 22 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 23 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 25 H 0.11 2.73 6.45 -51.93 -0.33 2.40 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 28 H 0.05 1.10 7.82 -51.93 -0.41 0.69 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.39 6.97 -51.93 -0.36 1.03 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 LS Contribution 292.22 15.07 4.40 4.40 Total: -1.00 -30.56 292.22 -6.78 -37.34 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.23 Total: 0.63 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.37 Total: 3.34 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.17 Total: -38.95 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.71 Total: -23.15 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.56 -6.78 -37.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595340507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.752 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds