Wall clock time and date at job start Sun Mar 29 2020 22:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34232 * 116.99789 * 2 1 4 4 O 1.20818 * 119.99836 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99568 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.46604 * 179.97438 * 5 3 2 7 7 C 1.36936 * 119.99802 * 96.08487 * 6 5 3 8 8 H 1.08003 * 119.99691 * 163.38769 * 7 6 5 9 9 C 1.38813 * 120.00157 * 343.10872 * 7 6 5 10 10 N 1.31620 * 119.99955 * 336.27110 * 9 7 6 11 11 Si 1.86795 * 120.00028 * 156.26659 * 9 7 6 12 12 H 1.48509 * 109.47131 * 60.00037 * 11 9 7 13 13 H 1.48493 * 109.47165 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47387 * 300.00393 * 11 9 7 15 15 C 1.46501 * 120.00191 * 276.07808 * 6 5 3 16 16 C 1.52994 * 109.47377 * 270.00472 * 15 6 5 17 17 C 1.54640 * 111.03713 * 287.02180 * 16 15 6 18 18 C 1.51100 * 104.72529 * 217.33401 * 17 16 15 19 19 C 1.30533 * 111.10459 * 16.43451 * 18 17 16 20 20 C 1.51108 * 111.10395 * 0.02562 * 19 18 17 21 21 H 1.08999 * 109.47251 * 300.00582 * 1 2 3 22 22 H 1.09001 * 109.46906 * 60.00494 * 1 2 3 23 23 H 1.09000 * 109.46868 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46878 * 60.00312 * 5 3 2 25 25 H 1.08997 * 109.47132 * 299.99857 * 5 3 2 26 26 H 0.97001 * 119.99840 * 179.97438 * 10 9 7 27 27 H 1.09002 * 109.46691 * 30.00453 * 15 6 5 28 28 H 1.08999 * 109.47067 * 150.00154 * 15 6 5 29 29 H 1.09005 * 110.91633 * 51.03533 * 16 15 6 30 30 H 1.08999 * 110.38540 * 336.14523 * 17 16 15 31 31 H 1.09000 * 110.38107 * 98.52392 * 17 16 15 32 32 H 1.08001 * 124.44877 * 196.46331 * 18 17 16 33 33 H 1.08001 * 124.44704 * 180.02562 * 19 18 17 34 34 H 1.08999 * 110.38389 * 224.75203 * 20 19 18 35 35 H 1.08996 * 110.38585 * 102.36892 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2958 3.3014 1.1788 8 1 4.8494 4.2287 1.1695 9 6 3.8978 2.7428 2.3856 10 7 2.8673 1.9248 2.4241 11 14 4.8247 3.1518 3.9550 12 1 4.7627 4.6153 4.1994 13 1 4.2060 2.4321 5.0971 14 1 6.2425 2.7328 3.8160 15 6 4.0611 3.4195 -1.2622 16 6 5.4642 3.2702 -1.8535 17 6 6.4948 4.1011 -1.0541 18 6 7.4453 4.6406 -2.0974 19 6 6.9314 4.5490 -3.2938 20 6 5.5521 3.9336 -3.2478 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.9564 0.7806 -0.8892 25 1 3.9557 0.7809 0.8908 26 1 2.5894 1.5342 3.2674 27 1 3.3272 3.0218 -1.9632 28 1 3.8543 4.4739 -1.0789 29 1 5.7575 2.2214 -1.8997 30 1 5.9995 4.9197 -0.5320 31 1 7.0279 3.4658 -0.3468 32 1 8.4220 5.0481 -1.8816 33 1 7.4270 4.8708 -4.1978 34 1 5.4445 3.1841 -4.0318 35 1 4.7887 4.7047 -3.3508 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595340507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:29 Heat of formation + Delta-G solvation = -61.701152 kcal Electronic energy + Delta-G solvation = -17730.329086 eV Core-core repulsion = 14922.025081 eV Total energy + Delta-G solvation = -2808.304004 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83364 -39.66625 -37.47891 -36.36234 -33.49558 -31.06225 -29.56770 -28.81099 -27.61608 -26.50384 -23.52309 -21.73970 -20.65583 -19.48266 -18.82143 -18.10553 -17.30100 -16.98981 -16.73334 -16.49304 -15.82967 -15.16091 -15.12704 -14.16875 -13.94512 -13.53982 -13.46851 -13.15002 -12.87459 -12.80830 -12.72967 -12.48381 -12.22875 -12.11709 -12.09653 -11.90464 -11.65996 -11.42142 -11.31051 -11.03474 -10.50089 -9.64593 -8.91753 -7.92730 -5.24392 1.48170 1.50189 1.50791 1.57184 1.97453 2.31945 2.56183 3.26347 3.51409 3.94307 4.00861 4.19648 4.38800 4.45646 4.51818 4.52924 4.59365 4.68654 4.75457 4.86716 4.98758 5.02010 5.03047 5.11625 5.21898 5.27633 5.40886 5.61285 5.65453 5.76312 5.92712 6.18241 6.25604 7.05089 7.47804 7.81900 8.21870 9.16106 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.018018 B = 0.009889 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.618023 B = 2830.743936 C = 4166.201400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.386 6.386 3 C 0.464 3.536 4 O -0.544 6.544 5 C 0.189 3.811 6 N -0.578 5.578 7 C -0.250 4.250 8 H 0.080 0.920 9 C -0.051 4.051 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.284 1.284 13 H -0.300 1.300 14 H -0.274 1.274 15 C 0.161 3.839 16 C -0.101 4.101 17 C -0.086 4.086 18 C -0.176 4.176 19 C -0.167 4.167 20 C -0.094 4.094 21 H 0.033 0.967 22 H 0.053 0.947 23 H 0.127 0.873 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.247 0.753 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 -1.255 -9.697 10.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.303 6.303 3 C 0.306 3.694 4 O -0.432 6.432 5 C 0.059 3.941 6 N -0.297 5.297 7 C -0.380 4.380 8 H 0.098 0.902 9 C -0.246 4.246 10 N -0.575 5.575 11 Si 0.793 3.207 12 H -0.210 1.210 13 H -0.227 1.227 14 H -0.200 1.200 15 C 0.035 3.965 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.194 4.194 19 C -0.184 4.184 20 C -0.132 4.132 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.145 0.855 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.099 0.901 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.396 -1.001 -9.557 10.567 hybrid contribution -0.389 0.377 1.430 1.530 sum 4.007 -0.624 -8.127 9.083 Atomic orbital electron populations 1.23169 0.77511 1.04211 1.00713 1.86508 1.23265 1.35375 1.85164 1.25879 0.94175 0.80206 0.69126 1.90433 1.67618 1.37851 1.47310 1.20315 0.84803 0.87007 1.01993 1.44162 1.74979 1.07336 1.03229 1.19480 1.27295 1.07403 0.83805 0.90240 1.25501 0.97364 1.01267 1.00478 1.70059 1.24638 1.37155 1.25660 0.85379 0.78836 0.77206 0.79250 1.21021 1.22663 1.19964 1.20895 0.94290 0.94943 0.86339 1.22501 0.95831 0.99215 0.94622 1.21262 0.95515 0.98297 0.97205 1.23495 0.99551 1.01076 0.95231 1.23440 0.96285 1.00484 0.98216 1.21400 0.95798 0.99534 0.96472 0.94765 0.92869 0.85493 0.89531 0.89120 0.94328 0.94349 0.94632 0.91016 0.92638 0.92658 0.84810 0.83809 0.90123 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.52 16 2 O -0.39 -16.70 10.57 -51.43 -0.54 -17.24 16 3 C 0.46 22.97 6.17 71.24 0.44 23.41 16 4 O -0.54 -30.67 15.81 21.99 0.35 -30.33 16 5 C 0.19 8.79 5.49 85.64 0.47 9.26 16 6 N -0.58 -27.92 2.02 -706.34 -1.42 -29.35 16 7 C -0.25 -13.27 9.09 84.03 0.76 -12.51 16 8 H 0.08 4.13 6.92 -2.91 -0.02 4.11 16 9 C -0.05 -2.80 4.81 84.86 0.41 -2.40 16 10 N -0.93 -53.89 9.39 21.65 0.20 -53.68 16 11 Si 0.96 44.78 29.62 68.60 2.03 46.81 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 C 0.16 6.56 5.02 86.38 0.43 6.99 16 16 C -0.10 -3.35 3.37 -9.67 -0.03 -3.38 16 17 C -0.09 -2.85 5.57 30.53 0.17 -2.68 16 18 C -0.18 -4.64 10.78 26.26 0.28 -4.36 16 19 C -0.17 -3.96 10.78 26.26 0.28 -3.67 16 20 C -0.09 -2.48 6.38 30.54 0.19 -2.29 16 21 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 22 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 23 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 24 H 0.09 3.35 8.12 -2.39 -0.02 3.33 16 25 H 0.09 4.60 6.45 -2.39 -0.02 4.58 16 26 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 27 H 0.04 1.54 8.07 -2.39 -0.02 1.52 16 28 H 0.04 1.54 7.82 -2.39 -0.02 1.52 16 29 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.06 2.05 6.97 -2.39 -0.02 2.03 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.91 7.89 -2.39 -0.02 1.89 16 Total: -1.00 -66.16 292.22 6.28 -59.88 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.06 Total: 13.02 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 4.61 Total: 10.89 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -1.22 Total: -83.03 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -0.20 Total: -47.57 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -66.16 6.28 -59.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595340507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.823 kcal (2) G-P(sol) polarization free energy of solvation -66.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds