Wall clock time and date at job start Sun Mar 29 2020 22:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99443 * 2 1 4 4 O 1.20819 * 120.00711 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99391 * 179.97438 * 3 2 1 6 6 N 1.46495 * 112.85338 * 323.47261 * 5 3 2 7 7 C 1.36945 * 119.99998 * 118.74929 * 6 5 3 8 8 H 1.08000 * 119.99756 * 306.45297 * 7 6 5 9 9 C 1.38808 * 120.00067 * 126.44829 * 7 6 5 10 10 N 1.31616 * 120.00050 * 344.41649 * 9 7 6 11 11 Si 1.86797 * 119.99840 * 164.40880 * 9 7 6 12 12 H 1.48501 * 109.47244 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46902 * 120.00483 * 11 9 7 14 14 H 1.48499 * 109.47614 * 240.00528 * 11 9 7 15 15 C 1.46498 * 120.00375 * 298.75099 * 6 5 3 16 16 C 1.52996 * 117.49988 * 182.94985 * 15 6 5 17 17 C 1.53003 * 117.50005 * 114.28996 * 15 6 5 18 18 C 1.53785 * 113.61458 * 192.16641 * 5 3 2 19 19 C 1.53781 * 87.08463 * 220.02192 * 18 5 3 20 20 C 1.53783 * 113.61284 * 94.67204 * 5 3 2 21 21 H 1.09000 * 109.47297 * 59.99623 * 1 2 3 22 22 H 1.08997 * 109.47121 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47001 * 299.99680 * 1 2 3 24 24 H 0.97003 * 119.99788 * 185.04220 * 10 9 7 25 25 H 1.08994 * 115.54736 * 328.62298 * 15 6 5 26 26 H 1.09008 * 117.50058 * 359.97438 * 16 15 6 27 27 H 1.09004 * 117.50150 * 145.02469 * 16 15 6 28 28 H 1.08994 * 117.50174 * 214.98379 * 17 15 6 29 29 H 1.09008 * 117.49633 * 359.97438 * 17 15 6 30 30 H 1.09003 * 113.61165 * 334.57386 * 18 5 3 31 31 H 1.09004 * 113.61423 * 105.46885 * 18 5 3 32 32 H 1.08994 * 113.61155 * 270.88632 * 19 18 5 33 33 H 1.08994 * 113.61266 * 139.98104 * 19 18 5 34 34 H 1.08996 * 113.61750 * 254.52740 * 20 5 3 35 35 H 1.09001 * 113.61626 * 25.43342 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 0.0006 6 7 4.1908 0.2216 0.8045 7 6 5.0312 -0.6837 0.2132 8 1 4.7009 -1.2438 -0.6491 9 6 6.3074 -0.8813 0.7221 10 7 6.8248 -0.0073 1.5591 11 14 7.2905 -2.3879 0.2190 12 1 6.4903 -3.2086 -0.7251 13 1 8.5492 -1.9595 -0.4423 14 1 7.6138 -3.1932 1.4241 15 6 3.9166 0.1365 2.2411 16 6 4.6524 -0.9424 3.0382 17 6 3.1578 -1.0933 2.7439 18 6 4.1092 2.6828 0.2975 19 6 5.1714 2.4153 -0.7819 20 6 4.1759 1.4215 -1.4036 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 7.7424 -0.1061 1.8577 25 1 3.7225 1.0862 2.7396 26 1 5.3403 -1.5893 2.4936 27 1 4.9421 -0.7027 4.0613 28 1 2.4649 -0.9528 3.5734 29 1 2.8624 -1.8390 2.0057 30 1 3.4150 3.4821 0.0383 31 1 4.5229 2.7887 1.3004 32 1 6.0758 1.9442 -0.3971 33 1 5.3787 3.2788 -1.4139 34 1 4.6435 0.5093 -1.7740 35 1 3.5000 1.8761 -2.1279 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595548118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:49 Heat of formation + Delta-G solvation = -6.972242 kcal Electronic energy + Delta-G solvation = -18550.025528 eV Core-core repulsion = 15744.094747 eV Total energy + Delta-G solvation = -2805.930781 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09188 -37.99016 -36.16971 -35.37879 -32.30914 -30.24060 -27.65663 -25.72400 -24.89511 -23.43527 -21.01731 -20.87808 -20.07473 -18.26458 -17.12764 -16.31463 -16.21278 -15.65632 -14.92939 -14.50317 -13.88291 -13.60385 -13.43204 -12.77748 -12.61827 -11.81540 -11.74860 -11.47160 -11.42983 -11.04907 -10.83519 -10.77537 -10.53654 -10.22700 -10.17828 -10.15086 -9.93252 -9.74183 -9.24825 -9.22922 -8.92046 -8.28976 -6.40411 -5.88942 -3.67275 2.90562 3.25864 3.36524 3.39619 3.51403 4.31236 4.98527 5.13632 5.27267 5.47580 5.49202 5.54983 5.57349 5.60010 5.75715 5.86043 6.12863 6.20786 6.36674 6.44665 6.49665 6.55346 6.73529 6.77437 6.92049 6.97749 7.02962 7.07913 7.26753 7.39759 7.59893 7.77281 8.43802 8.59312 9.10139 9.58296 10.29868 11.07391 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.024255 B = 0.011035 C = 0.009551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.109351 B = 2536.834398 C = 2931.017582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.336 6.336 3 C 0.464 3.536 4 O -0.537 6.537 5 C 0.183 3.817 6 N -0.514 5.514 7 C -0.280 4.280 8 H 0.058 0.942 9 C 0.046 3.954 10 N -0.863 5.863 11 Si 0.888 3.112 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.147 3.853 16 C -0.151 4.151 17 C -0.234 4.234 18 C -0.135 4.135 19 C -0.119 4.119 20 C -0.120 4.120 21 H 0.052 0.948 22 H 0.091 0.909 23 H 0.054 0.946 24 H 0.257 0.743 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 0.656 -1.938 5.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.251 6.251 3 C 0.306 3.694 4 O -0.426 6.426 5 C 0.092 3.908 6 N -0.231 5.231 7 C -0.409 4.409 8 H 0.076 0.924 9 C -0.159 4.159 10 N -0.500 5.500 11 Si 0.716 3.284 12 H -0.197 1.197 13 H -0.213 1.213 14 H -0.211 1.211 15 C 0.039 3.961 16 C -0.189 4.189 17 C -0.274 4.274 18 C -0.174 4.174 19 C -0.156 4.156 20 C -0.157 4.157 21 H 0.071 0.929 22 H 0.110 0.890 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.126 0.874 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.611 0.928 -1.810 5.968 hybrid contribution 0.254 -0.716 -0.011 0.760 sum -5.357 0.212 -1.821 5.662 Atomic orbital electron populations 1.23114 0.79218 1.02638 1.01407 1.86762 1.20968 1.34078 1.83253 1.25678 0.93332 0.80476 0.69870 1.90525 1.67507 1.36971 1.47588 1.20875 0.82379 0.91586 0.95997 1.42712 1.50106 1.28624 1.01704 1.18703 0.92507 1.15352 1.14355 0.92422 1.25535 0.96457 0.96907 0.96982 1.70055 1.13500 1.33582 1.32838 0.86491 0.80020 0.83433 0.78437 1.19658 1.21260 1.21075 1.20601 1.00582 0.90295 0.84654 1.22973 0.93156 1.04184 0.98575 1.23459 0.95000 1.06140 1.02840 1.23313 0.98060 0.95429 1.00599 1.22611 0.98604 0.97576 0.96818 1.22976 0.97889 1.01427 0.93430 0.92927 0.89023 0.92750 0.93264 0.90679 0.87415 0.91740 0.91859 0.89583 0.90609 0.90956 0.87680 0.93115 0.88721 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 101.05 1.07 1.53 16 2 O -0.34 -6.74 10.43 -39.27 -0.41 -7.15 16 3 C 0.46 9.87 6.91 36.01 0.25 10.12 16 4 O -0.54 -11.81 15.65 -18.74 -0.29 -12.10 16 5 C 0.18 3.95 1.19 -132.16 -0.16 3.80 16 6 N -0.51 -12.06 2.45 -151.30 -0.37 -12.43 16 7 C -0.28 -6.95 6.90 -15.06 -0.10 -7.06 16 8 H 0.06 1.49 7.44 -52.49 -0.39 1.10 16 9 C 0.05 1.14 3.13 -17.43 -0.05 1.08 16 10 N -0.86 -22.25 11.82 55.49 0.66 -21.60 16 11 Si 0.89 19.88 29.40 -169.99 -5.00 14.88 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 13 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.15 3.37 5.67 -67.93 -0.39 2.99 16 16 C -0.15 -3.41 8.47 -26.70 -0.23 -3.64 16 17 C -0.23 -4.93 10.36 -26.69 -0.28 -5.21 16 18 C -0.13 -2.74 7.18 -25.92 -0.19 -2.92 16 19 C -0.12 -2.32 7.85 -25.92 -0.20 -2.52 16 20 C -0.12 -2.36 6.88 -25.91 -0.18 -2.54 16 21 H 0.05 0.75 8.13 -51.93 -0.42 0.32 16 22 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 24 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 25 H 0.08 1.72 8.02 -51.93 -0.42 1.31 16 26 H 0.11 2.68 5.08 -51.92 -0.26 2.41 16 27 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.09 1.90 8.14 -51.92 -0.42 1.47 16 30 H 0.08 1.47 7.35 -51.93 -0.38 1.09 16 31 H 0.07 1.56 7.96 -51.93 -0.41 1.14 16 32 H 0.10 2.37 8.11 -51.93 -0.42 1.95 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.96 6.43 -51.93 -0.33 1.63 16 35 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 LS Contribution 289.95 15.07 4.37 4.37 Total: -1.00 -26.99 289.95 -6.64 -33.62 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.13 Total: 4.78 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.46 Total: -4.38 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.29 Total: -34.03 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.70 Total: -19.25 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.00 Total: 14.88 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.99 -6.64 -33.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595548118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.651 kcal (2) G-P(sol) polarization free energy of solvation -26.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds