Wall clock time and date at job start Sun Mar 29 2020 22:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99443 * 2 1 4 4 O 1.20819 * 120.00711 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99391 * 179.97438 * 3 2 1 6 6 N 1.46495 * 112.85338 * 323.47261 * 5 3 2 7 7 C 1.36945 * 119.99998 * 118.74929 * 6 5 3 8 8 H 1.08000 * 119.99756 * 306.45297 * 7 6 5 9 9 C 1.38808 * 120.00067 * 126.44829 * 7 6 5 10 10 N 1.31616 * 120.00050 * 344.41649 * 9 7 6 11 11 Si 1.86797 * 119.99840 * 164.40880 * 9 7 6 12 12 H 1.48501 * 109.47244 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46902 * 120.00483 * 11 9 7 14 14 H 1.48499 * 109.47614 * 240.00528 * 11 9 7 15 15 C 1.46498 * 120.00375 * 298.75099 * 6 5 3 16 16 C 1.52996 * 117.49988 * 182.94985 * 15 6 5 17 17 C 1.53003 * 117.50005 * 114.28996 * 15 6 5 18 18 C 1.53785 * 113.61458 * 192.16641 * 5 3 2 19 19 C 1.53781 * 87.08463 * 220.02192 * 18 5 3 20 20 C 1.53783 * 113.61284 * 94.67204 * 5 3 2 21 21 H 1.09000 * 109.47297 * 59.99623 * 1 2 3 22 22 H 1.08997 * 109.47121 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47001 * 299.99680 * 1 2 3 24 24 H 0.97003 * 119.99788 * 185.04220 * 10 9 7 25 25 H 1.08994 * 115.54736 * 328.62298 * 15 6 5 26 26 H 1.09008 * 117.50058 * 359.97438 * 16 15 6 27 27 H 1.09004 * 117.50150 * 145.02469 * 16 15 6 28 28 H 1.08994 * 117.50174 * 214.98379 * 17 15 6 29 29 H 1.09008 * 117.49633 * 359.97438 * 17 15 6 30 30 H 1.09003 * 113.61165 * 334.57386 * 18 5 3 31 31 H 1.09004 * 113.61423 * 105.46885 * 18 5 3 32 32 H 1.08994 * 113.61155 * 270.88632 * 19 18 5 33 33 H 1.08994 * 113.61266 * 139.98104 * 19 18 5 34 34 H 1.08996 * 113.61750 * 254.52740 * 20 5 3 35 35 H 1.09001 * 113.61626 * 25.43342 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 0.0006 6 7 4.1908 0.2216 0.8045 7 6 5.0312 -0.6837 0.2132 8 1 4.7009 -1.2438 -0.6491 9 6 6.3074 -0.8813 0.7221 10 7 6.8248 -0.0073 1.5591 11 14 7.2905 -2.3879 0.2190 12 1 6.4903 -3.2086 -0.7251 13 1 8.5492 -1.9595 -0.4423 14 1 7.6138 -3.1932 1.4241 15 6 3.9166 0.1365 2.2411 16 6 4.6524 -0.9424 3.0382 17 6 3.1578 -1.0933 2.7439 18 6 4.1092 2.6828 0.2975 19 6 5.1714 2.4153 -0.7819 20 6 4.1759 1.4215 -1.4036 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 7.7424 -0.1061 1.8577 25 1 3.7225 1.0862 2.7396 26 1 5.3403 -1.5893 2.4936 27 1 4.9421 -0.7027 4.0613 28 1 2.4649 -0.9528 3.5734 29 1 2.8624 -1.8390 2.0057 30 1 3.4150 3.4821 0.0383 31 1 4.5229 2.7887 1.3004 32 1 6.0758 1.9442 -0.3971 33 1 5.3787 3.2788 -1.4139 34 1 4.6435 0.5093 -1.7740 35 1 3.5000 1.8761 -2.1279 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595548118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:48 Heat of formation + Delta-G solvation = -20.435589 kcal Electronic energy + Delta-G solvation = -18550.609342 eV Core-core repulsion = 15744.094747 eV Total energy + Delta-G solvation = -2806.514595 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.70794 -39.62751 -37.86896 -37.00317 -34.18553 -32.02632 -29.06674 -27.39888 -26.47304 -25.21668 -22.76949 -22.46638 -21.84700 -19.94951 -18.76439 -18.16487 -17.78581 -17.20670 -16.62820 -16.29349 -15.55695 -15.30785 -15.04648 -14.31584 -14.16351 -13.55252 -13.35939 -13.15986 -12.89461 -12.81022 -12.64786 -12.47743 -12.18442 -11.98068 -11.94806 -11.63751 -11.56704 -11.44154 -10.96821 -10.89107 -10.68646 -10.18793 -8.26715 -7.76347 -5.59945 1.26806 1.45886 1.53299 1.60143 2.05197 2.47541 3.23574 3.27660 3.53470 3.88437 3.93015 4.05965 4.14876 4.34775 4.36743 4.38994 4.53143 4.67896 4.69070 4.79359 4.81826 4.93406 5.04412 5.14066 5.17490 5.34579 5.40093 5.50193 5.52263 5.72395 5.78701 5.82034 6.59897 6.90192 7.24638 7.73731 8.42813 9.15681 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.024255 B = 0.011035 C = 0.009551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.109351 B = 2536.834398 C = 2931.017582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.352 6.352 3 C 0.467 3.533 4 O -0.548 6.548 5 C 0.167 3.833 6 N -0.522 5.522 7 C -0.280 4.280 8 H 0.046 0.954 9 C 0.019 3.981 10 N -0.884 5.884 11 Si 0.937 3.063 12 H -0.271 1.271 13 H -0.287 1.287 14 H -0.289 1.289 15 C 0.130 3.870 16 C -0.156 4.156 17 C -0.209 4.209 18 C -0.127 4.127 19 C -0.109 4.109 20 C -0.112 4.112 21 H 0.062 0.938 22 H 0.123 0.877 23 H 0.056 0.944 24 H 0.254 0.746 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.584 0.557 -2.381 7.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.267 6.267 3 C 0.310 3.690 4 O -0.439 6.439 5 C 0.076 3.924 6 N -0.240 5.240 7 C -0.410 4.410 8 H 0.064 0.936 9 C -0.184 4.184 10 N -0.522 5.522 11 Si 0.765 3.235 12 H -0.195 1.195 13 H -0.214 1.214 14 H -0.215 1.215 15 C 0.022 3.978 16 C -0.194 4.194 17 C -0.249 4.249 18 C -0.167 4.167 19 C -0.146 4.146 20 C -0.150 4.150 21 H 0.080 0.920 22 H 0.141 0.859 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.654 0.819 -2.260 7.075 hybrid contribution 0.479 -0.699 0.130 0.857 sum -6.175 0.120 -2.130 6.533 Atomic orbital electron populations 1.23460 0.76436 1.04983 1.02012 1.86711 1.23756 1.33370 1.82848 1.25415 0.93156 0.80717 0.69722 1.90511 1.67717 1.37297 1.48328 1.21085 0.82905 0.91581 0.96816 1.42720 1.50290 1.29126 1.01874 1.18657 0.92738 1.15587 1.14000 0.93638 1.25910 0.97000 0.98376 0.97093 1.70141 1.13460 1.34733 1.33838 0.85737 0.78842 0.81181 0.77777 1.19511 1.21355 1.21538 1.20696 1.01718 0.90653 0.84729 1.22862 0.93824 1.03958 0.98737 1.23384 0.94370 1.04288 1.02864 1.23235 0.98344 0.95249 0.99825 1.22445 0.96995 0.98363 0.96835 1.22961 0.98016 1.01014 0.93003 0.91966 0.85907 0.92520 0.93643 0.91049 0.89650 0.90808 0.89258 0.90513 0.89333 0.92800 0.90913 0.90028 0.90082 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 10.56 113.37 1.20 1.88 16 2 O -0.35 -13.53 10.43 -51.45 -0.54 -14.06 16 3 C 0.47 19.19 6.91 71.24 0.49 19.68 16 4 O -0.55 -23.15 15.65 21.99 0.34 -22.81 16 5 C 0.17 7.08 1.19 3.39 0.00 7.09 16 6 N -0.52 -24.41 2.45 -632.59 -1.55 -25.95 16 7 C -0.28 -13.95 6.90 84.03 0.58 -13.37 16 8 H 0.05 2.36 7.44 -2.91 -0.02 2.34 16 9 C 0.02 0.93 3.13 84.86 0.27 1.20 16 10 N -0.88 -46.02 11.82 21.65 0.26 -45.76 16 11 Si 0.94 41.00 29.40 68.60 2.02 43.02 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 14 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 15 C 0.13 5.92 5.67 44.99 0.26 6.17 16 16 C -0.16 -6.97 8.47 30.62 0.26 -6.71 16 17 C -0.21 -8.50 10.36 30.62 0.32 -8.19 16 18 C -0.13 -5.07 7.18 31.12 0.22 -4.84 16 19 C -0.11 -4.15 7.85 31.12 0.24 -3.91 16 20 C -0.11 -4.30 6.88 31.12 0.21 -4.09 16 21 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 22 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 23 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 24 H 0.25 12.96 8.32 -92.71 -0.77 12.18 16 25 H 0.07 3.27 8.02 -2.39 -0.02 3.25 16 26 H 0.09 4.25 5.08 -2.38 -0.01 4.23 16 27 H 0.07 3.10 8.14 -2.38 -0.02 3.09 16 28 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 29 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 30 H 0.09 3.29 7.35 -2.39 -0.02 3.27 16 31 H 0.05 2.32 7.96 -2.39 -0.02 2.30 16 32 H 0.07 3.28 8.11 -2.39 -0.02 3.27 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.08 3.32 6.43 -2.39 -0.02 3.31 16 35 H 0.09 2.99 8.09 -2.39 -0.02 2.97 16 Total: -1.00 -56.29 289.95 5.65 -50.63 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 1.07 Total: 20.03 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 4.05 Total: -5.09 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -1.29 Total: -71.72 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.19 Total: -36.87 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.02 Total: 43.02 kcal Total: -56.29 5.65 -50.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595548118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.198 kcal (2) G-P(sol) polarization free energy of solvation -56.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds