Wall clock time and date at job start Sun Mar 29 2020 22:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30274 * 126.28380 * 2 1 4 4 N 1.28668 * 109.38367 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.37862 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.28217 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47073 * 90.02661 * 6 5 4 8 8 C 1.46900 * 111.00337 * 66.04754 * 7 6 5 9 9 C 1.46906 * 111.00115 * 190.00408 * 7 6 5 10 10 H 1.08997 * 109.47009 * 188.85691 * 9 7 6 11 11 C 1.53005 * 109.46511 * 308.85356 * 9 7 6 12 12 C 1.52993 * 109.47285 * 68.85126 * 9 7 6 13 13 C 1.50704 * 109.46892 * 62.93328 * 12 9 7 14 14 H 1.07996 * 119.99845 * 355.15378 * 13 12 9 15 15 C 1.37883 * 119.99966 * 175.15751 * 13 12 9 16 16 N 1.31514 * 119.99910 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99893 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47016 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46843 * 120.00133 * 17 15 13 20 20 H 1.48495 * 109.47024 * 239.99845 * 17 15 13 21 21 O 1.34363 * 107.43911 * 359.75923 * 5 4 3 22 22 H 1.09009 * 109.47145 * 90.02599 * 1 2 3 23 23 H 1.09000 * 109.47492 * 330.02534 * 1 2 3 24 24 H 1.09000 * 109.46997 * 210.02304 * 1 2 3 25 25 H 1.09006 * 109.47387 * 210.02549 * 6 5 4 26 26 H 1.09002 * 109.47265 * 330.02824 * 6 5 4 27 27 H 1.08999 * 109.46847 * 54.12547 * 8 7 6 28 28 H 1.09000 * 109.47269 * 174.13339 * 8 7 6 29 29 H 1.09006 * 109.46508 * 294.13004 * 8 7 6 30 30 H 1.08997 * 109.47211 * 60.00458 * 11 9 7 31 31 H 1.08998 * 109.46551 * 179.97438 * 11 9 7 32 32 H 1.08993 * 109.47134 * 299.99682 * 11 9 7 33 33 H 1.09001 * 109.47233 * 182.93273 * 12 9 7 34 34 H 1.08996 * 109.47693 * 302.93516 * 12 9 7 35 35 H 0.96997 * 119.99783 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5091 0.6761 0.0005 5 6 3.5654 -0.6254 0.0004 6 6 4.8176 -1.4638 0.0014 7 7 5.2228 -1.7370 1.3867 8 6 4.2344 -2.5844 2.0671 9 6 6.5593 -2.3452 1.4342 10 1 6.7701 -2.6804 2.4497 11 6 6.6092 -3.5414 0.4815 12 6 7.6051 -1.3119 1.0106 13 6 7.6054 -0.1669 1.9904 14 1 6.8754 -0.1366 2.7858 15 6 8.5375 0.8421 1.8714 16 7 9.4261 0.8055 0.9025 17 14 8.5374 2.2618 3.0854 18 1 7.4448 2.0689 4.0724 19 1 9.8418 2.3072 3.7940 20 1 8.3262 3.5374 2.3552 21 8 2.3021 -1.0831 0.0051 22 1 -0.3634 -0.0005 -1.0277 23 1 -0.3634 0.8902 0.5134 24 1 -0.3633 -0.8898 0.5142 25 1 4.6250 -2.4053 -0.5132 26 1 5.6153 -0.9261 -0.5112 27 1 4.0649 -3.4874 1.4805 28 1 4.6076 -2.8571 3.0542 29 1 3.2973 -2.0375 2.1712 30 1 6.3984 -3.2062 -0.5340 31 1 7.6009 -3.9923 0.5163 32 1 5.8642 -4.2775 0.7832 33 1 8.5906 -1.7775 0.9956 34 1 7.3646 -0.9383 0.0154 35 1 10.0820 1.5151 0.8189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595699339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:39 Heat of formation + Delta-G solvation = 41.936939 kcal Electronic energy + Delta-G solvation = -17460.807291 eV Core-core repulsion = 14689.290122 eV Total energy + Delta-G solvation = -2771.517168 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.94627 -38.13384 -35.88530 -33.34492 -32.63049 -30.93225 -29.24380 -27.33539 -26.66989 -24.56460 -22.87596 -22.36038 -21.85800 -19.07556 -17.25250 -16.88396 -16.15049 -15.76094 -14.91390 -14.67806 -14.27524 -14.04934 -13.38655 -13.31862 -13.02846 -12.66298 -12.37795 -12.14042 -12.00370 -11.73171 -11.58881 -11.50834 -11.17111 -10.92851 -10.65818 -10.61354 -10.37189 -10.09067 -9.32299 -9.18464 -8.97390 -8.22372 -7.76625 -5.85356 -3.82790 1.36548 2.44885 2.68740 3.44425 3.52491 3.58313 3.99789 4.44971 4.59572 4.62962 4.92100 5.10909 5.28537 5.38777 5.50168 5.54200 5.58902 5.61821 5.66381 5.80819 5.84530 5.85030 5.92820 6.02450 6.13038 6.38487 6.50204 6.83984 7.31702 7.46185 7.75251 7.86505 8.15156 8.58428 8.62735 9.23365 9.80031 11.26712 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.007582 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.920068 B = 3692.245978 C = 4517.521845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.140 3.860 3 N -0.289 5.289 4 N -0.263 5.263 5 C 0.186 3.814 6 C 0.149 3.851 7 N -0.509 5.509 8 C 0.021 3.979 9 C 0.088 3.912 10 H 0.079 0.921 11 C -0.187 4.187 12 C 0.028 3.972 13 C -0.491 4.491 14 H 0.062 0.938 15 C 0.053 3.947 16 N -0.903 5.903 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.286 1.286 21 O -0.233 6.233 22 H 0.094 0.906 23 H 0.103 0.897 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.133 0.867 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.027 0.973 34 H 0.015 0.985 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 -8.098 -2.319 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 N -0.137 5.137 4 N -0.109 5.109 5 C -0.026 4.026 6 C 0.020 3.980 7 N -0.234 5.234 8 C -0.127 4.127 9 C -0.019 4.019 10 H 0.098 0.902 11 C -0.246 4.246 12 C -0.009 4.009 13 C -0.529 4.529 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.544 5.544 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.215 1.215 20 H -0.212 1.212 21 O -0.113 6.113 22 H 0.112 0.888 23 H 0.121 0.879 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.150 0.850 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.033 0.967 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.707 -6.316 -2.121 16.146 hybrid contribution -0.379 -1.072 0.234 1.161 sum -15.086 -7.388 -1.886 16.903 Atomic orbital electron populations 1.20246 0.80711 1.05304 1.04754 1.27895 0.97667 0.80217 1.01323 1.74434 0.96536 1.25842 1.16902 1.74537 1.10972 1.09377 1.16021 1.28169 0.84418 0.91786 0.98191 1.20660 0.87957 0.96113 0.93252 1.62053 1.02806 1.46250 1.12259 1.22462 0.95974 0.94942 0.99371 1.22050 0.87737 0.93212 0.98875 0.90241 1.22572 1.01831 0.99469 1.00731 1.19241 0.92027 0.92781 0.96843 1.21166 1.13635 1.05393 1.12723 0.92004 1.24975 0.95781 0.98200 0.95697 1.69959 1.18723 1.33662 1.32077 0.86573 0.77361 0.82856 0.81437 1.19832 1.21484 1.21183 1.84765 1.18015 1.38432 1.70078 0.88767 0.87851 0.89301 0.92232 0.84951 0.95870 0.91066 0.92863 0.92792 0.91855 0.93897 0.95504 0.96669 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.14 2.02 8.48 -12.94 -0.11 1.91 16 3 N -0.29 -5.35 12.22 32.55 0.40 -4.95 16 4 N -0.26 -5.51 12.22 32.55 0.40 -5.12 16 5 C 0.19 3.38 7.05 -12.94 -0.09 3.29 16 6 C 0.15 2.60 4.44 -4.98 -0.02 2.58 16 7 N -0.51 -9.54 4.30 -236.32 -1.02 -10.55 16 8 C 0.02 0.32 8.97 60.06 0.54 0.86 16 9 C 0.09 1.70 2.27 -67.71 -0.15 1.54 16 10 H 0.08 1.54 7.88 -51.93 -0.41 1.13 16 11 C -0.19 -2.90 8.41 37.16 0.31 -2.58 16 12 C 0.03 0.69 4.40 -27.88 -0.12 0.57 16 13 C -0.49 -13.80 8.80 -34.44 -0.30 -14.10 16 14 H 0.06 1.77 7.69 -52.49 -0.40 1.36 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 17 Si 0.89 22.84 29.54 -169.99 -5.02 17.82 16 18 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 O -0.23 -3.65 10.46 5.37 0.06 -3.59 16 22 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 23 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.87 6.77 -51.93 -0.35 0.52 16 26 H 0.13 2.57 6.18 -51.93 -0.32 2.24 16 27 H 0.02 0.31 7.08 -51.93 -0.37 -0.06 16 28 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 29 H 0.05 0.82 7.14 -51.93 -0.37 0.45 16 30 H 0.05 0.80 6.54 -51.93 -0.34 0.47 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.58 7.02 -51.93 -0.36 0.21 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.39 6.36 -51.93 -0.33 0.06 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 291.72 15.07 4.40 4.40 Total: -1.00 -33.51 291.72 -4.64 -38.15 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -4.92 Total: -4.98 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 0.33 Total: -4.52 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.52 Total: -47.27 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: 0.06 Total: -3.59 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.51 -4.64 -38.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595699339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.086 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds