Wall clock time and date at job start Sun Mar 29 2020 22:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30274 * 126.28380 * 2 1 4 4 N 1.28668 * 109.38367 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.37862 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.28217 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47073 * 90.02661 * 6 5 4 8 8 C 1.46900 * 111.00337 * 66.04754 * 7 6 5 9 9 C 1.46906 * 111.00115 * 190.00408 * 7 6 5 10 10 H 1.08997 * 109.47009 * 188.85691 * 9 7 6 11 11 C 1.53005 * 109.46511 * 308.85356 * 9 7 6 12 12 C 1.52993 * 109.47285 * 68.85126 * 9 7 6 13 13 C 1.50704 * 109.46892 * 62.93328 * 12 9 7 14 14 H 1.07996 * 119.99845 * 355.15378 * 13 12 9 15 15 C 1.37883 * 119.99966 * 175.15751 * 13 12 9 16 16 N 1.31514 * 119.99910 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99893 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47016 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46843 * 120.00133 * 17 15 13 20 20 H 1.48495 * 109.47024 * 239.99845 * 17 15 13 21 21 O 1.34363 * 107.43911 * 359.75923 * 5 4 3 22 22 H 1.09009 * 109.47145 * 90.02599 * 1 2 3 23 23 H 1.09000 * 109.47492 * 330.02534 * 1 2 3 24 24 H 1.09000 * 109.46997 * 210.02304 * 1 2 3 25 25 H 1.09006 * 109.47387 * 210.02549 * 6 5 4 26 26 H 1.09002 * 109.47265 * 330.02824 * 6 5 4 27 27 H 1.08999 * 109.46847 * 54.12547 * 8 7 6 28 28 H 1.09000 * 109.47269 * 174.13339 * 8 7 6 29 29 H 1.09006 * 109.46508 * 294.13004 * 8 7 6 30 30 H 1.08997 * 109.47211 * 60.00458 * 11 9 7 31 31 H 1.08998 * 109.46551 * 179.97438 * 11 9 7 32 32 H 1.08993 * 109.47134 * 299.99682 * 11 9 7 33 33 H 1.09001 * 109.47233 * 182.93273 * 12 9 7 34 34 H 1.08996 * 109.47693 * 302.93516 * 12 9 7 35 35 H 0.96997 * 119.99783 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5091 0.6761 0.0005 5 6 3.5654 -0.6254 0.0004 6 6 4.8176 -1.4638 0.0014 7 7 5.2228 -1.7370 1.3867 8 6 4.2344 -2.5844 2.0671 9 6 6.5593 -2.3452 1.4342 10 1 6.7701 -2.6804 2.4497 11 6 6.6092 -3.5414 0.4815 12 6 7.6051 -1.3119 1.0106 13 6 7.6054 -0.1669 1.9904 14 1 6.8754 -0.1366 2.7858 15 6 8.5375 0.8421 1.8714 16 7 9.4261 0.8055 0.9025 17 14 8.5374 2.2618 3.0854 18 1 7.4448 2.0689 4.0724 19 1 9.8418 2.3072 3.7940 20 1 8.3262 3.5374 2.3552 21 8 2.3021 -1.0831 0.0051 22 1 -0.3634 -0.0005 -1.0277 23 1 -0.3634 0.8902 0.5134 24 1 -0.3633 -0.8898 0.5142 25 1 4.6250 -2.4053 -0.5132 26 1 5.6153 -0.9261 -0.5112 27 1 4.0649 -3.4874 1.4805 28 1 4.6076 -2.8571 3.0542 29 1 3.2973 -2.0375 2.1712 30 1 6.3984 -3.2062 -0.5340 31 1 7.6009 -3.9923 0.5163 32 1 5.8642 -4.2775 0.7832 33 1 8.5906 -1.7775 0.9956 34 1 7.3646 -0.9383 0.0154 35 1 10.0820 1.5151 0.8189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595699339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:39 Heat of formation + Delta-G solvation = 14.076178 kcal Electronic energy + Delta-G solvation = -17462.015424 eV Core-core repulsion = 14689.290122 eV Total energy + Delta-G solvation = -2772.725302 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.22900 -39.57520 -37.18770 -35.13765 -34.09191 -32.45567 -30.41065 -29.09997 -27.88822 -26.03395 -24.68097 -23.58987 -23.26722 -20.58711 -18.54501 -18.39784 -18.07294 -17.14930 -16.61730 -15.97838 -15.79717 -15.42603 -14.62800 -14.46849 -14.04103 -13.96795 -13.69125 -13.49924 -13.45328 -13.24689 -13.07966 -12.86651 -12.78487 -12.52155 -12.47994 -12.34693 -11.90444 -11.83776 -11.11689 -11.08622 -10.56125 -10.43492 -9.12537 -8.09645 -6.11908 0.14106 1.24662 1.37111 1.37710 1.41672 1.52284 2.47644 2.84385 3.11986 3.28059 3.47557 3.85217 4.10390 4.17162 4.35644 4.40837 4.42332 4.49341 4.56461 4.59182 4.63074 4.68602 4.76458 4.93968 5.02874 5.07769 5.18545 5.25224 5.48962 5.70221 5.89378 6.13172 6.24018 6.47474 7.01977 7.32793 7.53741 9.02427 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.007582 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.920068 B = 3692.245978 C = 4517.521845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.165 3.835 3 N -0.336 5.336 4 N -0.316 5.316 5 C 0.183 3.817 6 C 0.155 3.845 7 N -0.540 5.540 8 C 0.027 3.973 9 C 0.099 3.901 10 H 0.077 0.923 11 C -0.177 4.177 12 C 0.032 3.968 13 C -0.495 4.495 14 H 0.053 0.947 15 C -0.001 4.001 16 N -0.936 5.936 17 Si 0.946 3.054 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.289 1.289 21 O -0.227 6.227 22 H 0.122 0.878 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.005 0.995 34 H -0.003 1.003 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.569 -9.584 -1.895 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.047 4.047 3 N -0.182 5.182 4 N -0.162 5.162 5 C -0.030 4.030 6 C 0.027 3.973 7 N -0.265 5.265 8 C -0.121 4.121 9 C -0.008 4.008 10 H 0.096 0.904 11 C -0.236 4.236 12 C -0.005 4.005 13 C -0.534 4.534 14 H 0.071 0.929 15 C -0.197 4.197 16 N -0.579 5.579 17 Si 0.773 3.227 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.215 1.215 21 O -0.106 6.106 22 H 0.140 0.860 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.023 0.977 34 H 0.015 0.985 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.038 -7.796 -1.686 18.813 hybrid contribution 0.211 -0.620 0.090 0.662 sum -16.827 -8.417 -1.596 18.882 Atomic orbital electron populations 1.20721 0.75907 1.07294 1.07065 1.29206 0.99552 0.78914 0.97019 1.74341 0.96256 1.27669 1.19981 1.74442 1.12825 1.11123 1.17781 1.28104 0.85428 0.91206 0.98238 1.20535 0.86967 0.96991 0.92855 1.61849 1.03261 1.48036 1.13340 1.22443 0.94675 0.95297 0.99682 1.21711 0.86748 0.92800 0.99545 0.90448 1.22439 1.03033 0.98238 0.99859 1.19111 0.92933 0.93270 0.95203 1.21499 1.12710 1.06370 1.12782 0.92858 1.25730 0.95885 1.00727 0.97399 1.70060 1.19567 1.34577 1.33689 0.85676 0.77756 0.79767 0.79494 1.19587 1.20237 1.21516 1.84781 1.17150 1.38559 1.70148 0.86014 0.86561 0.86485 0.88798 0.87914 0.93130 0.90522 0.93236 0.92399 0.91698 0.90823 0.97712 0.98507 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.63 10.51 71.24 0.75 0.12 16 2 C 0.16 4.42 8.48 88.34 0.75 5.17 16 3 N -0.34 -12.39 12.22 -165.50 -2.02 -14.41 16 4 N -0.32 -13.51 12.22 -165.51 -2.02 -15.53 16 5 C 0.18 6.60 7.05 88.34 0.62 7.22 16 6 C 0.16 5.34 4.44 85.56 0.38 5.72 16 7 N -0.54 -19.69 4.30 -901.59 -3.87 -23.57 16 8 C 0.03 0.75 8.97 127.69 1.15 1.89 16 9 C 0.10 3.74 2.27 44.91 0.10 3.84 16 10 H 0.08 2.93 7.88 -2.39 -0.02 2.91 16 11 C -0.18 -5.07 8.41 71.98 0.61 -4.47 16 12 C 0.03 1.61 4.40 29.85 0.13 1.75 16 13 C -0.50 -28.47 8.80 25.60 0.23 -28.24 16 14 H 0.05 3.10 7.69 -2.91 -0.02 3.07 16 15 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 16 N -0.94 -58.23 13.29 21.45 0.28 -57.95 16 17 Si 0.95 47.71 29.54 68.60 2.03 49.73 16 18 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 20 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 21 O -0.23 -6.64 10.46 -3.70 -0.04 -6.68 16 22 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 23 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.09 2.51 6.77 -2.38 -0.02 2.50 16 26 H 0.10 4.13 6.18 -2.39 -0.01 4.11 16 27 H 0.05 1.14 7.08 -2.39 -0.02 1.13 16 28 H 0.08 2.04 7.90 -2.39 -0.02 2.02 16 29 H 0.05 1.42 7.14 -2.38 -0.02 1.40 16 30 H 0.06 1.61 6.54 -2.39 -0.02 1.59 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 1.68 7.02 -2.39 -0.02 1.67 16 33 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.00 -0.18 6.36 -2.39 -0.02 -0.19 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -75.29 291.72 0.61 -74.68 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: 1.08 Total: 0.33 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 5.17 Total: -6.61 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -7.63 Total: -111.46 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.04 Total: -6.68 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.73 kcal Total: -75.29 0.61 -74.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595699339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.756 kcal (2) G-P(sol) polarization free energy of solvation -75.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds