Wall clock time and date at job start Sun Mar 29 2020 22:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47171 * 2 1 4 4 C 1.52998 * 109.47142 * 240.00118 * 2 1 3 5 5 C 1.53000 * 109.47169 * 120.00212 * 2 1 3 6 6 H 1.09000 * 109.47197 * 180.02562 * 5 2 1 7 7 O 1.42896 * 109.46872 * 299.99796 * 5 2 1 8 8 C 1.53001 * 109.46897 * 59.99805 * 5 2 1 9 9 C 1.50706 * 109.46726 * 174.99899 * 8 5 2 10 10 C 1.34949 * 125.48054 * 125.00143 * 9 8 5 11 11 N 1.36672 * 106.72436 * 180.02562 * 10 9 8 12 12 C 1.37563 * 126.88612 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00257 * 0.02562 * 12 11 10 14 14 C 1.39013 * 120.00220 * 179.97438 * 12 11 10 15 15 N 1.31261 * 119.99526 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00467 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46805 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47285 * 119.99809 * 16 14 12 19 19 H 1.48503 * 109.47366 * 240.00231 * 16 14 12 20 20 N 1.40331 * 106.22541 * 359.97438 * 11 10 9 21 21 N 1.28750 * 108.03068 * 359.73339 * 20 11 10 22 22 H 1.09005 * 109.47182 * 299.99861 * 1 2 3 23 23 H 1.09006 * 109.47407 * 59.99957 * 1 2 3 24 24 H 1.08995 * 109.47387 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46827 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.46983 * 300.00257 * 3 2 1 27 27 H 1.08997 * 109.46681 * 59.99991 * 3 2 1 28 28 H 1.09003 * 109.47353 * 300.00284 * 4 2 1 29 29 H 1.09007 * 109.47270 * 60.00190 * 4 2 1 30 30 H 1.09000 * 109.47492 * 180.02562 * 4 2 1 31 31 H 0.96706 * 113.99958 * 60.00559 * 7 5 2 32 32 H 1.08999 * 109.47230 * 55.00155 * 8 5 2 33 33 H 1.09000 * 109.47236 * 294.99751 * 8 5 2 34 34 H 1.08000 * 126.64011 * 0.03528 * 10 9 8 35 35 H 0.97005 * 119.99559 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7209 1.2494 7 8 1.5637 -0.0477 2.4159 8 6 1.5299 -2.1638 1.2491 9 6 2.1309 -2.9091 2.4130 10 6 1.4363 -3.5708 3.3622 11 7 2.3550 -4.1006 4.2243 12 6 2.0965 -4.8554 5.3449 13 1 1.0771 -5.0839 5.6187 14 6 3.1474 -5.3250 6.1243 15 7 4.3864 -5.0477 5.7912 16 14 2.7965 -6.3506 7.6455 17 1 1.3293 -6.5195 7.8009 18 1 3.4363 -7.6830 7.5027 19 1 3.3447 -5.6640 8.8428 20 7 3.6149 -3.7202 3.7371 21 7 3.4356 -3.0260 2.6676 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2493 29 1 1.6766 -0.2073 -2.1393 30 1 3.1299 -0.7216 -1.2491 31 1 0.5996 -0.0095 2.4821 32 1 1.8182 -2.6511 0.3178 33 1 0.4436 -2.1651 1.3388 34 1 0.3623 -3.6638 3.4278 35 1 5.1198 -5.3757 6.3349 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600973303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:42 Heat of formation + Delta-G solvation = 18.147779 kcal Electronic energy + Delta-G solvation = -17323.862127 eV Core-core repulsion = 14551.313383 eV Total energy + Delta-G solvation = -2772.548744 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.08394 -38.68345 -34.40496 -34.06305 -31.54073 -30.89959 -27.54109 -27.30189 -26.70449 -25.37889 -22.97532 -21.21443 -19.55862 -18.81075 -17.52124 -15.94960 -15.48221 -15.08333 -14.76105 -14.43999 -13.94261 -13.74412 -13.50481 -12.95709 -12.42015 -12.21670 -12.03878 -11.91761 -11.86822 -11.62271 -11.37570 -11.27963 -11.04593 -10.94556 -10.65712 -10.54792 -10.15939 -9.89022 -9.55559 -9.31537 -9.04619 -8.61105 -7.25314 -6.75947 -4.55278 2.86094 2.98551 3.05437 3.40751 3.73200 4.17165 4.71758 4.83190 4.85039 4.88338 4.95713 5.13243 5.49342 5.60803 5.68901 5.71694 5.82825 5.89317 5.98766 5.99466 6.06000 6.16358 6.26730 6.34648 6.36518 6.41066 6.53824 6.65187 6.85031 7.04850 7.19548 7.89492 7.98249 8.14046 8.58541 9.20851 10.21431 10.31211 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.056751 B = 0.005153 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.263125 B = 5432.082496 C = 5516.455858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.135 4.135 4 C -0.143 4.143 5 C 0.126 3.874 6 H 0.101 0.899 7 O -0.551 6.551 8 C -0.050 4.050 9 C -0.064 4.064 10 C -0.117 4.117 11 N -0.149 5.149 12 C -0.316 4.316 13 H 0.119 0.881 14 C 0.047 3.953 15 N -0.762 5.762 16 Si 0.941 3.059 17 H -0.261 1.261 18 H -0.271 1.271 19 H -0.271 1.271 20 N -0.093 5.093 21 N -0.327 5.327 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.362 0.638 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.151 0.849 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 5.983 -7.552 12.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.193 4.193 4 C -0.200 4.200 5 C 0.067 3.933 6 H 0.119 0.881 7 O -0.356 6.356 8 C -0.089 4.089 9 C -0.211 4.211 10 C -0.271 4.271 11 N 0.079 4.921 12 C -0.453 4.453 13 H 0.137 0.863 14 C -0.172 4.172 15 N -0.389 5.389 16 Si 0.764 3.236 17 H -0.184 1.184 18 H -0.196 1.196 19 H -0.196 1.196 20 N -0.069 5.069 21 N -0.187 5.187 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.208 0.792 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.168 0.832 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.609 5.968 -7.206 10.909 hybrid contribution -1.946 -0.639 0.548 2.120 sum -7.555 5.329 -6.658 11.393 Atomic orbital electron populations 1.21941 0.94915 1.02061 1.01559 1.21280 0.95862 0.96454 0.96743 1.21772 1.01043 0.95174 1.01272 1.21900 1.01404 1.00449 0.96242 1.21933 0.99473 0.89352 0.82591 0.88091 1.86651 1.25545 1.79034 1.44345 1.20413 0.98574 0.94392 0.95568 1.20504 0.90491 1.08962 1.01135 1.22278 0.95811 1.10956 0.98012 1.46661 1.05538 1.25527 1.14371 1.20146 0.95577 1.29231 1.00325 0.86319 1.25768 0.94481 0.97150 0.99848 1.70166 0.98884 1.34496 1.35304 0.85656 0.79573 0.78964 0.79369 1.18448 1.19640 1.19618 1.82514 0.99010 1.18577 1.06841 1.73939 1.16203 1.16484 1.12085 0.92635 0.92773 0.92037 0.92768 0.93352 0.92167 0.91982 0.92988 0.92386 0.79203 0.91105 0.91668 0.83184 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 7.81 37.15 0.29 -1.25 16 2 C -0.10 -1.27 0.63 -154.51 -0.10 -1.37 16 3 C -0.14 -1.61 8.33 37.16 0.31 -1.30 16 4 C -0.14 -1.65 8.13 37.16 0.30 -1.35 16 5 C 0.13 2.07 2.27 -26.73 -0.06 2.01 16 6 H 0.10 1.95 8.08 -51.93 -0.42 1.54 16 7 O -0.55 -9.65 12.38 -35.23 -0.44 -10.09 16 8 C -0.05 -0.87 4.73 -27.88 -0.13 -1.00 16 9 C -0.06 -1.51 6.14 -83.05 -0.51 -2.02 16 10 C -0.12 -2.85 11.45 -16.56 -0.19 -3.04 16 11 N -0.15 -4.20 3.78 -11.47 -0.04 -4.25 16 12 C -0.32 -8.40 10.31 -14.69 -0.15 -8.55 16 13 H 0.12 2.80 7.83 -52.49 -0.41 2.39 16 14 C 0.05 1.20 5.50 -17.51 -0.10 1.10 16 15 N -0.76 -21.20 11.89 55.50 0.66 -20.54 16 16 Si 0.94 18.57 29.55 -169.99 -5.02 13.55 16 17 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 20 N -0.09 -2.81 11.73 60.35 0.71 -2.10 16 21 N -0.33 -9.11 12.24 33.16 0.41 -8.71 16 22 H 0.05 0.54 6.78 -51.93 -0.35 0.19 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.63 6.55 -51.93 -0.34 0.29 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.74 7.68 -51.93 -0.40 0.35 16 28 H 0.06 0.72 6.32 -51.93 -0.33 0.39 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.36 4.96 7.33 45.56 0.33 5.29 16 32 H 0.07 1.17 6.17 -51.93 -0.32 0.85 16 33 H 0.06 0.97 6.66 -51.93 -0.35 0.63 16 34 H 0.15 3.07 8.06 -52.49 -0.42 2.64 16 35 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 288.68 15.07 4.35 4.35 Total: -1.00 -32.83 288.68 -3.97 -36.79 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.25 Total: 7.79 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -0.34 Total: -16.78 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 1.73 Total: -35.60 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.44 Total: -10.09 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.83 -3.97 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600973303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.941 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds