Wall clock time and date at job start Sun Mar 29 2020 22:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47171 * 2 1 4 4 C 1.52998 * 109.47142 * 240.00118 * 2 1 3 5 5 C 1.53000 * 109.47169 * 120.00212 * 2 1 3 6 6 H 1.09000 * 109.47197 * 180.02562 * 5 2 1 7 7 O 1.42896 * 109.46872 * 299.99796 * 5 2 1 8 8 C 1.53001 * 109.46897 * 59.99805 * 5 2 1 9 9 C 1.50706 * 109.46726 * 174.99899 * 8 5 2 10 10 C 1.34949 * 125.48054 * 125.00143 * 9 8 5 11 11 N 1.36672 * 106.72436 * 180.02562 * 10 9 8 12 12 C 1.37563 * 126.88612 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00257 * 0.02562 * 12 11 10 14 14 C 1.39013 * 120.00220 * 179.97438 * 12 11 10 15 15 N 1.31261 * 119.99526 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00467 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46805 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47285 * 119.99809 * 16 14 12 19 19 H 1.48503 * 109.47366 * 240.00231 * 16 14 12 20 20 N 1.40331 * 106.22541 * 359.97438 * 11 10 9 21 21 N 1.28750 * 108.03068 * 359.73339 * 20 11 10 22 22 H 1.09005 * 109.47182 * 299.99861 * 1 2 3 23 23 H 1.09006 * 109.47407 * 59.99957 * 1 2 3 24 24 H 1.08995 * 109.47387 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46827 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.46983 * 300.00257 * 3 2 1 27 27 H 1.08997 * 109.46681 * 59.99991 * 3 2 1 28 28 H 1.09003 * 109.47353 * 300.00284 * 4 2 1 29 29 H 1.09007 * 109.47270 * 60.00190 * 4 2 1 30 30 H 1.09000 * 109.47492 * 180.02562 * 4 2 1 31 31 H 0.96706 * 113.99958 * 60.00559 * 7 5 2 32 32 H 1.08999 * 109.47230 * 55.00155 * 8 5 2 33 33 H 1.09000 * 109.47236 * 294.99751 * 8 5 2 34 34 H 1.08000 * 126.64011 * 0.03528 * 10 9 8 35 35 H 0.97005 * 119.99559 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7209 1.2494 7 8 1.5637 -0.0477 2.4159 8 6 1.5299 -2.1638 1.2491 9 6 2.1309 -2.9091 2.4130 10 6 1.4363 -3.5708 3.3622 11 7 2.3550 -4.1006 4.2243 12 6 2.0965 -4.8554 5.3449 13 1 1.0771 -5.0839 5.6187 14 6 3.1474 -5.3250 6.1243 15 7 4.3864 -5.0477 5.7912 16 14 2.7965 -6.3506 7.6455 17 1 1.3293 -6.5195 7.8009 18 1 3.4363 -7.6830 7.5027 19 1 3.3447 -5.6640 8.8428 20 7 3.6149 -3.7202 3.7371 21 7 3.4356 -3.0260 2.6676 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2493 29 1 1.6766 -0.2073 -2.1393 30 1 3.1299 -0.7216 -1.2491 31 1 0.5996 -0.0095 2.4821 32 1 1.8182 -2.6511 0.3178 33 1 0.4436 -2.1651 1.3388 34 1 0.3623 -3.6638 3.4278 35 1 5.1198 -5.3757 6.3349 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600973303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:42 Heat of formation + Delta-G solvation = -6.029912 kcal Electronic energy + Delta-G solvation = -17324.910550 eV Core-core repulsion = 14551.313383 eV Total energy + Delta-G solvation = -2773.597167 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.01925 -39.91510 -36.04549 -35.55653 -33.40521 -32.68847 -29.11123 -28.15014 -27.86984 -27.24616 -24.43694 -23.19866 -21.46587 -19.91646 -19.37156 -17.48298 -17.18505 -16.39744 -16.21056 -15.96210 -15.35520 -15.15286 -14.93788 -14.57314 -13.92366 -13.69255 -13.25280 -13.19941 -13.07325 -12.96138 -12.79980 -12.65462 -12.24488 -12.04658 -12.02749 -11.76384 -11.61055 -11.53456 -11.29234 -11.03056 -10.65644 -10.53056 -9.19806 -8.67981 -6.60755 1.12843 1.37152 1.58549 1.64731 2.07043 2.26441 2.83063 2.93901 3.63219 3.73847 3.93136 4.10422 4.30812 4.32791 4.48345 4.56716 4.71276 4.81147 4.85786 4.92935 4.95963 5.00187 5.01117 5.11128 5.14687 5.19303 5.23273 5.37067 5.37631 5.55390 5.62839 5.98804 6.08196 6.63306 6.99608 7.22995 8.27670 8.34234 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.056751 B = 0.005153 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.263125 B = 5432.082496 C = 5516.455858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.135 4.135 4 C -0.144 4.144 5 C 0.132 3.868 6 H 0.060 0.940 7 O -0.575 6.575 8 C -0.047 4.047 9 C -0.056 4.056 10 C -0.129 4.129 11 N -0.166 5.166 12 C -0.346 4.346 13 H 0.146 0.854 14 C -0.003 4.003 15 N -0.814 5.814 16 Si 1.029 2.971 17 H -0.237 1.237 18 H -0.267 1.267 19 H -0.269 1.269 20 N -0.157 5.157 21 N -0.362 5.362 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.379 0.621 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.191 0.809 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.962 5.896 -7.753 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.093 4.093 3 C -0.192 4.192 4 C -0.201 4.201 5 C 0.072 3.928 6 H 0.078 0.922 7 O -0.382 6.382 8 C -0.086 4.086 9 C -0.205 4.205 10 C -0.282 4.282 11 N 0.062 4.938 12 C -0.482 4.482 13 H 0.163 0.837 14 C -0.218 4.218 15 N -0.442 5.442 16 Si 0.846 3.154 17 H -0.160 1.160 18 H -0.192 1.192 19 H -0.194 1.194 20 N -0.133 5.133 21 N -0.220 5.220 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.228 0.772 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.208 0.792 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.462 5.904 -7.445 12.724 hybrid contribution -1.106 -0.557 0.554 1.357 sum -9.568 5.347 -6.891 12.947 Atomic orbital electron populations 1.21943 0.92656 1.02826 1.02852 1.21164 0.97546 0.96013 0.94622 1.21770 1.00202 0.95112 1.02099 1.21922 1.00647 1.00733 0.96783 1.21761 0.97360 0.89311 0.84362 0.92207 1.86608 1.27293 1.79139 1.45179 1.20612 1.00243 0.94255 0.93461 1.21505 0.89238 1.07605 1.02140 1.23117 0.97449 1.10251 0.97357 1.47031 1.05747 1.25828 1.15229 1.21002 0.97327 1.29415 1.00409 0.83679 1.27127 0.93674 0.97737 1.03229 1.70333 1.00479 1.36078 1.37260 0.84409 0.80623 0.76498 0.73876 1.15990 1.19190 1.19365 1.82466 1.00845 1.21312 1.08683 1.73904 1.18558 1.17340 1.12232 0.91999 0.90919 0.91509 0.94216 0.90990 0.92794 0.91909 0.90662 0.93763 0.77245 0.90004 0.88184 0.79174 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 7.81 71.98 0.56 -1.93 16 2 C -0.09 -2.12 0.63 -52.18 -0.03 -2.15 16 3 C -0.13 -3.00 8.33 71.98 0.60 -2.40 16 4 C -0.14 -3.04 8.13 71.98 0.59 -2.46 16 5 C 0.13 4.25 2.27 30.59 0.07 4.32 16 6 H 0.06 2.42 8.08 -2.39 -0.02 2.40 16 7 O -0.57 -19.78 12.38 -148.98 -1.84 -21.62 16 8 C -0.05 -1.56 4.73 29.85 0.14 -1.41 16 9 C -0.06 -2.68 6.14 41.56 0.26 -2.43 16 10 C -0.13 -6.20 11.45 83.18 0.95 -5.25 16 11 N -0.17 -9.48 3.78 -190.21 -0.72 -10.20 16 12 C -0.35 -18.32 10.31 83.98 0.87 -17.45 16 13 H 0.15 6.61 7.83 -2.91 -0.02 6.58 16 14 C 0.00 -0.18 5.50 84.96 0.47 0.29 16 15 N -0.81 -46.72 11.89 21.66 0.26 -46.46 16 16 Si 1.03 37.35 29.55 68.60 2.03 39.38 16 17 H -0.24 -7.65 7.11 99.48 0.71 -6.94 16 18 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 19 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 20 N -0.16 -9.95 11.73 37.02 0.43 -9.51 16 21 N -0.36 -20.93 12.24 -48.99 -0.60 -21.53 16 22 H 0.06 0.99 6.78 -2.38 -0.02 0.97 16 23 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.07 1.09 6.55 -2.39 -0.02 1.07 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.26 7.68 -2.39 -0.02 1.24 16 28 H 0.06 1.31 6.32 -2.39 -0.02 1.30 16 29 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.38 9.66 7.33 -74.05 -0.54 9.12 16 32 H 0.08 2.59 6.17 -2.39 -0.01 2.57 16 33 H 0.10 2.64 6.66 -2.39 -0.02 2.62 16 34 H 0.19 7.26 8.06 -2.91 -0.02 7.24 16 35 H 0.29 14.82 8.31 -92.70 -0.77 14.05 16 Total: -1.00 -75.31 288.68 4.57 -70.74 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.55 Total: 30.09 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 4.47 Total: -30.88 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -0.63 Total: -87.70 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -1.84 Total: -21.62 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -75.31 4.57 -70.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600973303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.706 kcal (2) G-P(sol) polarization free energy of solvation -75.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds