Wall clock time and date at job start Sun Mar 29 2020 22:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99773 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47559 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47225 * 120.00279 * 9 7 5 12 12 H 1.48505 * 109.47115 * 239.99990 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 N 1.46905 * 109.47028 * 64.99820 * 13 2 1 15 15 C 1.46897 * 111.00138 * 179.97438 * 14 13 2 16 16 C 1.50699 * 109.47187 * 180.02562 * 15 14 13 17 17 N 1.33322 * 126.54843 * 269.69477 * 16 15 14 18 18 N 1.29001 * 107.34847 * 179.83466 * 17 16 15 19 19 N 1.28780 * 108.72898 * 0.42874 * 18 17 16 20 20 C 1.46501 * 125.44907 * 179.73004 * 19 18 17 21 21 N 1.28880 * 109.10097 * 359.72893 * 19 18 17 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 26 26 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 27 27 H 0.97000 * 120.00259 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.47465 * 185.00197 * 13 2 1 29 29 H 1.08998 * 109.47565 * 305.00629 * 13 2 1 30 30 H 1.00906 * 110.99658 * 56.04875 * 14 13 2 31 31 H 1.08996 * 109.47257 * 300.00577 * 15 14 13 32 32 H 1.09004 * 109.46984 * 60.00897 * 15 14 13 33 33 H 1.09009 * 109.47116 * 269.99982 * 20 19 18 34 34 H 1.09000 * 109.47459 * 29.99431 * 20 19 18 35 35 H 1.08997 * 109.47448 * 150.00272 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6755 -1.5193 3.8512 9 14 1.4976 0.5622 5.2497 10 1 0.7403 1.7733 4.8435 11 1 0.6433 -0.2871 6.1180 12 1 2.7154 0.9668 5.9970 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.1258 -0.6266 -3.6671 16 6 1.7098 0.1791 -4.8708 17 7 0.5780 0.0459 -5.5627 18 7 0.6016 0.9205 -6.5107 19 7 1.7048 1.5807 -6.4369 20 6 2.1116 2.6594 -7.3409 21 7 2.3938 1.1406 -5.4406 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6054 -1.7199 1.2952 26 1 3.1263 -0.7995 1.2056 27 1 2.9227 -1.8423 4.7318 28 1 3.1263 -0.7996 -1.2055 29 1 1.6054 -1.7198 -1.2952 30 1 1.9882 0.9872 -2.3967 31 1 3.2127 -0.7038 -3.6400 32 1 1.6920 -1.6247 -3.7300 33 1 2.6648 2.2400 -8.1813 34 1 1.2264 3.1769 -7.7106 35 1 2.7464 3.3639 -6.8035 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602638728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:58 Heat of formation + Delta-G solvation = 114.890038 kcal Electronic energy + Delta-G solvation = -16375.108162 eV Core-core repulsion = 13639.047229 eV Total energy + Delta-G solvation = -2736.060934 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.42007 -37.12938 -35.39496 -34.25198 -32.97102 -31.79949 -29.17630 -27.24286 -26.43022 -24.51650 -23.21694 -22.44670 -21.88793 -19.16423 -17.69013 -17.59183 -16.32759 -15.45937 -15.09280 -14.75794 -14.30488 -14.08714 -13.79513 -13.66597 -13.20777 -12.59858 -12.42529 -12.05605 -11.97800 -11.50229 -11.34147 -11.09035 -11.00821 -10.84058 -10.73057 -10.34976 -10.26433 -10.19098 -9.68259 -9.13191 -8.93278 -8.31059 -8.22460 -5.95750 -3.96548 1.08425 1.77334 2.06773 3.33777 3.41394 3.45662 3.71347 4.10055 4.46720 4.48352 4.54501 4.68570 4.78793 5.27582 5.40329 5.45685 5.62924 5.68144 5.74316 5.87936 5.98758 6.16772 6.42048 6.55160 6.71272 7.00101 7.17786 7.21759 7.29978 7.53770 7.71872 7.87592 8.04767 8.26606 8.48872 9.10041 9.66821 11.15868 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.055763 B = 0.003645 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.002144 B = 7679.118721 C = 7782.182551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.681 5.681 15 C 0.155 3.845 16 C 0.181 3.819 17 N -0.267 5.267 18 N -0.068 5.068 19 N -0.146 5.146 20 C 0.096 3.904 21 N -0.309 5.309 22 H 0.041 0.959 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.017 0.983 26 H 0.013 0.987 27 H 0.259 0.741 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.341 0.659 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 6.405 -21.096 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.063 4.063 14 N -0.313 5.313 15 C 0.022 3.978 16 C -0.102 4.102 17 N -0.139 5.139 18 N -0.062 5.062 19 N -0.058 5.058 20 C -0.044 4.044 21 N -0.160 5.160 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.158 0.842 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.133 6.241 -21.547 22.433 hybrid contribution 1.096 0.626 1.241 1.770 sum 0.963 6.867 -20.306 21.457 Atomic orbital electron populations 1.21598 0.95613 1.00735 1.00165 1.21209 0.96119 0.98934 0.93862 0.92809 1.19131 0.95946 0.95635 0.90334 1.21279 1.34452 1.08284 0.90977 0.92516 1.25019 0.95370 0.95102 0.99099 1.69973 1.39209 1.21251 1.23255 0.86576 0.78224 0.80146 0.83302 1.19762 1.21089 1.21142 1.22208 0.97542 0.97863 0.88694 1.60527 1.64006 1.06014 1.00730 1.20142 0.98345 0.95969 0.83310 1.25606 0.89169 0.95594 0.99857 1.75874 1.19693 1.15709 1.02575 1.78980 1.06121 1.03112 1.17993 1.50011 1.10500 1.25685 1.19589 1.22387 1.03755 0.86325 0.91910 1.74693 1.24485 1.14737 1.02114 0.93964 0.92774 0.93977 0.96414 0.96844 0.93166 0.95198 0.90939 0.84180 0.92321 0.87790 0.88228 0.87057 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 6 H 0.06 1.56 7.05 -52.49 -0.37 1.19 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.07 1.10 5.07 -3.82 -0.02 1.08 16 14 N -0.68 -10.17 5.95 -115.06 -0.68 -10.85 16 15 C 0.15 2.00 6.31 -4.98 -0.03 1.96 16 16 C 0.18 2.50 7.88 -156.62 -1.23 1.27 16 17 N -0.27 -4.03 12.50 32.45 0.41 -3.63 16 18 N -0.07 -0.90 13.25 60.35 0.80 -0.10 16 19 N -0.15 -1.56 4.40 -16.69 -0.07 -1.63 16 20 C 0.10 0.41 11.63 59.85 0.70 1.10 16 21 N -0.31 -3.90 12.13 32.47 0.39 -3.51 16 22 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 23 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.34 4.99 8.72 -39.29 -0.34 4.65 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.10 0.22 8.14 -51.92 -0.42 -0.20 16 34 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 301.30 15.07 4.54 4.54 Total: -1.00 -33.38 301.30 -5.16 -38.54 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.26 Total: -2.61 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -0.99 Total: -11.24 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 1.58 Total: -46.01 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.38 -5.16 -38.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602638728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.426 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds