Wall clock time and date at job start Sun Mar 29 2020 22:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99773 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47559 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47225 * 120.00279 * 9 7 5 12 12 H 1.48505 * 109.47115 * 239.99990 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 N 1.46905 * 109.47028 * 64.99820 * 13 2 1 15 15 C 1.46897 * 111.00138 * 179.97438 * 14 13 2 16 16 C 1.50699 * 109.47187 * 180.02562 * 15 14 13 17 17 N 1.33322 * 126.54843 * 269.69477 * 16 15 14 18 18 N 1.29001 * 107.34847 * 179.83466 * 17 16 15 19 19 N 1.28780 * 108.72898 * 0.42874 * 18 17 16 20 20 C 1.46501 * 125.44907 * 179.73004 * 19 18 17 21 21 N 1.28880 * 109.10097 * 359.72893 * 19 18 17 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 26 26 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 27 27 H 0.97000 * 120.00259 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.47465 * 185.00197 * 13 2 1 29 29 H 1.08998 * 109.47565 * 305.00629 * 13 2 1 30 30 H 1.00906 * 110.99658 * 56.04875 * 14 13 2 31 31 H 1.08996 * 109.47257 * 300.00577 * 15 14 13 32 32 H 1.09004 * 109.46984 * 60.00897 * 15 14 13 33 33 H 1.09009 * 109.47116 * 269.99982 * 20 19 18 34 34 H 1.09000 * 109.47459 * 29.99431 * 20 19 18 35 35 H 1.08997 * 109.47448 * 150.00272 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6755 -1.5193 3.8512 9 14 1.4976 0.5622 5.2497 10 1 0.7403 1.7733 4.8435 11 1 0.6433 -0.2871 6.1180 12 1 2.7154 0.9668 5.9970 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.1258 -0.6266 -3.6671 16 6 1.7098 0.1791 -4.8708 17 7 0.5780 0.0459 -5.5627 18 7 0.6016 0.9205 -6.5107 19 7 1.7048 1.5807 -6.4369 20 6 2.1116 2.6594 -7.3409 21 7 2.3938 1.1406 -5.4406 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6054 -1.7199 1.2952 26 1 3.1263 -0.7995 1.2056 27 1 2.9227 -1.8423 4.7318 28 1 3.1263 -0.7996 -1.2055 29 1 1.6054 -1.7198 -1.2952 30 1 1.9882 0.9872 -2.3967 31 1 3.2127 -0.7038 -3.6400 32 1 1.6920 -1.6247 -3.7300 33 1 2.6648 2.2400 -8.1813 34 1 1.2264 3.1769 -7.7106 35 1 2.7464 3.3639 -6.8035 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602638728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:57 Heat of formation + Delta-G solvation = 90.535474 kcal Electronic energy + Delta-G solvation = -16376.164256 eV Core-core repulsion = 13639.047229 eV Total energy + Delta-G solvation = -2737.117027 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.34701 -38.50633 -36.47165 -35.58433 -34.40444 -33.41214 -30.02843 -28.87821 -27.82990 -26.08800 -24.18123 -23.98652 -22.97311 -20.82432 -18.57189 -18.46523 -18.37176 -16.68700 -16.54010 -16.23406 -15.67502 -15.34324 -14.81178 -14.47793 -14.29482 -14.06349 -13.74356 -13.45315 -13.24989 -13.04616 -12.86627 -12.73955 -12.54691 -12.20091 -12.02660 -11.97609 -11.93912 -11.47010 -11.24986 -11.04323 -10.86433 -10.51240 -9.42147 -8.15419 -6.23784 0.17701 1.02634 1.15538 1.40973 1.41944 1.54577 2.43814 2.78042 3.18284 3.27419 3.39277 4.08294 4.14666 4.24962 4.31567 4.34823 4.53257 4.56288 4.58502 4.72000 4.81627 4.92065 4.95600 5.04223 5.22344 5.31655 5.48115 5.53510 5.58023 5.83640 5.92088 5.94137 6.32634 6.34945 6.92436 7.31493 7.44242 8.96773 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.055763 B = 0.003645 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.002144 B = 7679.118721 C = 7782.182551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.959 3.041 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.079 3.921 14 N -0.683 5.683 15 C 0.158 3.842 16 C 0.170 3.830 17 N -0.302 5.302 18 N -0.081 5.081 19 N -0.129 5.129 20 C 0.078 3.922 21 N -0.313 5.313 22 H 0.060 0.940 23 H 0.036 0.964 24 H 0.038 0.962 25 H -0.007 1.007 26 H -0.009 1.009 27 H 0.262 0.738 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.343 0.657 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.765 7.888 -22.099 23.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.784 3.216 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.049 4.049 14 N -0.315 5.315 15 C 0.026 3.974 16 C -0.113 4.113 17 N -0.172 5.172 18 N -0.075 5.075 19 N -0.043 5.043 20 C -0.059 4.059 21 N -0.166 5.166 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.011 0.989 26 H 0.009 0.991 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.161 0.839 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.163 7.738 -22.580 23.870 hybrid contribution 1.151 0.238 1.431 1.852 sum 0.988 7.976 -21.149 22.625 Atomic orbital electron populations 1.21493 0.94994 1.00508 1.00166 1.21018 0.96485 0.98523 0.93317 0.92844 1.19013 0.94365 0.94745 0.92385 1.21679 1.34226 1.08529 0.92176 0.92280 1.25918 0.95345 0.96103 1.02549 1.70097 1.40383 1.22883 1.24181 0.85482 0.78052 0.78889 0.79138 1.18732 1.20630 1.20497 1.21897 0.97502 0.97463 0.88087 1.60411 1.64344 1.06061 1.00669 1.20143 0.99248 0.95859 0.82127 1.25645 0.89220 0.96213 1.00261 1.75827 1.20739 1.17047 1.03607 1.78896 1.07137 1.03509 1.17944 1.50578 1.09353 1.25366 1.19006 1.23040 1.05488 0.85445 0.91955 1.74665 1.24673 1.14571 1.02682 0.92086 0.94471 0.94315 0.98866 0.99088 0.92961 0.94911 0.90933 0.83901 0.90754 0.87326 0.85708 0.84909 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 8.89 71.98 0.64 -3.83 16 2 C -0.07 -3.03 2.48 -10.79 -0.03 -3.05 16 3 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.03 1.69 4.45 29.85 0.13 1.83 16 5 C -0.53 -29.92 8.41 25.60 0.22 -29.71 16 6 H 0.06 3.25 7.05 -2.91 -0.02 3.23 16 7 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 8 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 9 Si 0.96 44.74 29.54 68.60 2.03 46.76 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.08 2.61 5.07 86.30 0.44 3.05 16 14 N -0.68 -19.48 5.95 -517.94 -3.08 -22.56 16 15 C 0.16 3.87 6.31 85.56 0.54 4.41 16 16 C 0.17 4.49 7.88 138.55 1.09 5.58 16 17 N -0.30 -8.87 12.50 -51.26 -0.64 -9.51 16 18 N -0.08 -2.05 13.25 37.02 0.49 -1.56 16 19 N -0.13 -2.48 4.40 -206.72 -0.91 -3.39 16 20 C 0.08 0.43 11.63 127.77 1.49 1.92 16 21 N -0.31 -7.36 12.13 -51.20 -0.62 -7.98 16 22 H 0.06 2.15 7.75 -2.39 -0.02 2.13 16 23 H 0.04 1.55 6.95 -2.39 -0.02 1.53 16 24 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.34 9.54 8.72 -89.69 -0.78 8.75 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 33 H 0.12 0.14 8.14 -2.38 -0.02 0.12 16 34 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -71.76 301.30 2.83 -68.93 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.30 Total: 5.56 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 4.98 Total: -19.46 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -4.47 Total: -101.79 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.76 2.83 -68.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602638728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.466 kcal (2) G-P(sol) polarization free energy of solvation -71.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds