Wall clock time and date at job start Sun Mar 29 2020 22:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47014 * 2 1 4 4 N 1.30273 * 126.28456 * 89.99793 * 3 2 1 5 5 N 1.28663 * 109.38474 * 179.73474 * 4 3 2 6 6 C 1.30281 * 109.37803 * 0.44361 * 5 4 3 7 7 C 1.50694 * 126.28011 * 179.82985 * 6 5 4 8 8 H 1.09003 * 109.46907 * 164.68840 * 7 6 5 9 9 C 1.53004 * 109.47294 * 284.68418 * 7 6 5 10 10 N 1.46901 * 109.47403 * 44.68988 * 7 6 5 11 11 C 1.46902 * 110.99865 * 154.99666 * 10 7 6 12 12 H 1.09000 * 109.47263 * 35.00248 * 11 10 7 13 13 C 1.52997 * 109.47489 * 274.99915 * 11 10 7 14 14 C 1.50706 * 109.46580 * 154.99645 * 11 10 7 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 11 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 O 1.34362 * 126.27936 * 270.00467 * 3 2 1 23 23 H 1.09005 * 109.46697 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47626 * 299.99742 * 1 2 3 25 25 H 1.08996 * 109.47185 * 60.00318 * 1 2 3 26 26 H 1.09004 * 109.47213 * 240.00034 * 2 1 3 27 27 H 1.08996 * 109.47185 * 119.99681 * 2 1 3 28 28 H 1.08998 * 109.47269 * 179.97438 * 9 7 6 29 29 H 1.08995 * 109.47144 * 300.00512 * 9 7 6 30 30 H 1.09001 * 109.46288 * 60.00368 * 9 7 6 31 31 H 1.00897 * 110.99955 * 278.94917 * 10 7 6 32 32 H 1.09001 * 109.46922 * 180.02562 * 13 11 10 33 33 H 1.09000 * 109.47140 * 300.00408 * 13 11 10 34 34 H 1.09002 * 109.47045 * 60.00316 * 13 11 10 35 35 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2893 2.1477 1.0501 5 7 2.7049 3.3065 0.6761 6 6 2.7183 3.3615 -0.6255 7 6 3.1357 4.5422 -1.4638 8 1 3.3031 4.2175 -2.4908 9 6 2.0325 5.6020 -1.4374 10 7 4.3763 5.1131 -0.9224 11 6 5.1253 5.8281 -1.9644 12 1 4.4265 6.3087 -2.6492 13 6 5.9966 4.8364 -2.7378 14 6 6.0014 6.8743 -1.3248 15 1 6.0021 6.9955 -0.2516 16 6 6.8029 7.6759 -2.1097 17 7 7.5679 8.5884 -1.5515 18 14 6.8023 7.4658 -3.9658 19 1 7.8396 6.4759 -4.3523 20 1 5.4692 6.9844 -4.4090 21 1 7.0975 8.7700 -4.6117 22 8 2.2973 2.1705 -1.0831 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.3346 6.4561 -2.0434 29 1 1.1121 5.1784 -1.8391 30 1 1.8652 5.9266 -0.4104 31 1 4.1840 5.7164 -0.1369 32 1 6.5527 5.3671 -3.5106 33 1 6.6954 4.3558 -2.0530 34 1 5.3629 4.0798 -3.2004 35 1 8.1321 9.1522 -2.1036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602859946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:05 Heat of formation + Delta-G solvation = 35.085286 kcal Electronic energy + Delta-G solvation = -17120.258556 eV Core-core repulsion = 14348.444277 eV Total energy + Delta-G solvation = -2771.814278 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.99338 -37.23698 -35.92253 -34.58495 -33.28453 -31.32390 -29.32224 -27.68880 -25.34614 -24.88074 -24.15259 -21.84329 -21.33508 -19.86257 -17.49192 -17.01786 -16.65949 -15.70104 -15.25928 -14.88050 -14.41545 -14.03012 -13.72458 -13.01895 -12.94898 -12.79708 -12.27653 -12.21951 -12.18260 -12.07767 -11.62933 -11.61752 -11.50064 -11.21047 -11.02933 -10.70160 -10.56921 -10.19771 -9.60377 -9.28660 -9.13902 -8.68054 -7.76804 -6.15096 -4.16194 1.35375 2.35396 2.64202 3.22218 3.30011 3.33815 3.89541 4.32226 4.49360 4.69075 4.78628 4.93268 5.05420 5.11872 5.16838 5.26096 5.41500 5.44068 5.61528 5.64215 5.72607 5.85893 5.93060 5.95380 6.19958 6.30656 6.43785 6.57009 6.68746 7.25954 7.43635 7.73183 8.16878 8.49479 8.57044 8.89833 9.45251 10.97673 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049131 B = 0.005210 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.765551 B = 5373.136539 C = 5484.769473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.023 4.023 3 C 0.143 3.857 4 N -0.288 5.288 5 N -0.276 5.276 6 C 0.193 3.807 7 C 0.175 3.825 8 H 0.102 0.898 9 C -0.175 4.175 10 N -0.664 5.664 11 C 0.186 3.814 12 H 0.008 0.992 13 C -0.142 4.142 14 C -0.522 4.522 15 H 0.082 0.918 16 C 0.074 3.926 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.268 1.268 21 H -0.296 1.296 22 O -0.229 6.229 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.356 0.644 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.594 -14.263 -2.002 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 C -0.069 4.069 4 N -0.135 5.135 5 N -0.122 5.122 6 C -0.019 4.019 7 C 0.062 3.938 8 H 0.120 0.880 9 C -0.234 4.234 10 N -0.298 5.298 11 C 0.078 3.922 12 H 0.026 0.974 13 C -0.200 4.200 14 C -0.560 4.560 15 H 0.100 0.900 16 C -0.129 4.129 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.205 1.205 20 H -0.193 1.193 21 H -0.224 1.224 22 O -0.108 6.108 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.177 0.823 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.943 -14.321 -0.854 19.322 hybrid contribution -0.374 0.323 -2.303 2.356 sum -13.317 -13.998 -3.157 19.577 Atomic orbital electron populations 1.21796 0.92976 1.03031 1.03069 1.20066 0.96873 0.83744 1.05445 1.27900 1.00909 0.97957 0.80110 1.74365 1.14418 0.98875 1.25817 1.74371 1.16167 1.12250 1.09408 1.28359 0.95581 0.86201 0.91728 1.19868 0.91998 0.86605 0.95363 0.88010 1.22491 0.97926 0.99177 1.03812 1.60270 1.16149 1.42010 1.11365 1.19598 0.92185 0.90903 0.89534 0.97418 1.22143 0.99962 0.98612 0.99236 1.21027 1.23907 1.15229 0.95849 0.90038 1.24911 0.94768 0.94718 0.98501 1.69886 1.26185 1.21319 1.35797 0.86824 0.78867 0.76226 0.86056 1.20452 1.19337 1.22409 1.84753 1.64152 1.23481 1.38427 0.90730 0.91631 0.92146 0.88746 0.87346 0.90000 0.92415 0.91177 0.82332 0.94091 0.92144 0.95623 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.02 -0.19 6.56 -27.88 -0.18 -0.38 16 3 C 0.14 2.01 7.73 -12.94 -0.10 1.91 16 4 N -0.29 -4.97 12.22 32.55 0.40 -4.57 16 5 N -0.28 -5.22 12.22 32.55 0.40 -4.83 16 6 C 0.19 3.35 7.32 -12.94 -0.09 3.25 16 7 C 0.17 2.94 2.94 -68.86 -0.20 2.74 16 8 H 0.10 1.63 7.11 -51.93 -0.37 1.26 16 9 C -0.17 -2.53 9.13 37.16 0.34 -2.19 16 10 N -0.66 -13.48 6.03 -102.17 -0.62 -14.09 16 11 C 0.19 4.22 2.00 -68.86 -0.14 4.08 16 12 H 0.01 0.19 6.17 -51.93 -0.32 -0.13 16 13 C -0.14 -3.08 8.88 37.16 0.33 -2.75 16 14 C -0.52 -14.22 9.17 -34.44 -0.32 -14.53 16 15 H 0.08 2.42 7.86 -52.49 -0.41 2.01 16 16 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 17 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 18 Si 0.89 21.33 24.37 -169.99 -4.14 17.18 16 19 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 20 H -0.27 -6.07 6.53 56.52 0.37 -5.70 16 21 H -0.30 -7.13 7.11 56.52 0.40 -6.72 16 22 O -0.23 -3.59 10.87 5.37 0.06 -3.53 16 23 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.20 7.43 -51.93 -0.39 0.82 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.36 7.39 7.96 -39.29 -0.31 7.07 16 32 H 0.04 0.91 3.27 -51.93 -0.17 0.74 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.02 0.48 7.43 -51.93 -0.39 0.09 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 289.93 15.07 4.37 4.37 Total: -1.00 -31.45 289.93 -3.78 -35.22 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.92 Total: 2.85 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -0.09 Total: -6.58 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.95 Total: -49.52 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: 0.06 Total: -3.53 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.14 Total: 17.18 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.45 -3.78 -35.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602859946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.309 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds