Wall clock time and date at job start Sun Mar 29 2020 22:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47014 * 2 1 4 4 N 1.30273 * 126.28456 * 89.99793 * 3 2 1 5 5 N 1.28663 * 109.38474 * 179.73474 * 4 3 2 6 6 C 1.30281 * 109.37803 * 0.44361 * 5 4 3 7 7 C 1.50694 * 126.28011 * 179.82985 * 6 5 4 8 8 H 1.09003 * 109.46907 * 164.68840 * 7 6 5 9 9 C 1.53004 * 109.47294 * 284.68418 * 7 6 5 10 10 N 1.46901 * 109.47403 * 44.68988 * 7 6 5 11 11 C 1.46902 * 110.99865 * 154.99666 * 10 7 6 12 12 H 1.09000 * 109.47263 * 35.00248 * 11 10 7 13 13 C 1.52997 * 109.47489 * 274.99915 * 11 10 7 14 14 C 1.50706 * 109.46580 * 154.99645 * 11 10 7 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 11 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 O 1.34362 * 126.27936 * 270.00467 * 3 2 1 23 23 H 1.09005 * 109.46697 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47626 * 299.99742 * 1 2 3 25 25 H 1.08996 * 109.47185 * 60.00318 * 1 2 3 26 26 H 1.09004 * 109.47213 * 240.00034 * 2 1 3 27 27 H 1.08996 * 109.47185 * 119.99681 * 2 1 3 28 28 H 1.08998 * 109.47269 * 179.97438 * 9 7 6 29 29 H 1.08995 * 109.47144 * 300.00512 * 9 7 6 30 30 H 1.09001 * 109.46288 * 60.00368 * 9 7 6 31 31 H 1.00897 * 110.99955 * 278.94917 * 10 7 6 32 32 H 1.09001 * 109.46922 * 180.02562 * 13 11 10 33 33 H 1.09000 * 109.47140 * 300.00408 * 13 11 10 34 34 H 1.09002 * 109.47045 * 60.00316 * 13 11 10 35 35 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2893 2.1477 1.0501 5 7 2.7049 3.3065 0.6761 6 6 2.7183 3.3615 -0.6255 7 6 3.1357 4.5422 -1.4638 8 1 3.3031 4.2175 -2.4908 9 6 2.0325 5.6020 -1.4374 10 7 4.3763 5.1131 -0.9224 11 6 5.1253 5.8281 -1.9644 12 1 4.4265 6.3087 -2.6492 13 6 5.9966 4.8364 -2.7378 14 6 6.0014 6.8743 -1.3248 15 1 6.0021 6.9955 -0.2516 16 6 6.8029 7.6759 -2.1097 17 7 7.5679 8.5884 -1.5515 18 14 6.8023 7.4658 -3.9658 19 1 7.8396 6.4759 -4.3523 20 1 5.4692 6.9844 -4.4090 21 1 7.0975 8.7700 -4.6117 22 8 2.2973 2.1705 -1.0831 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.3346 6.4561 -2.0434 29 1 1.1121 5.1784 -1.8391 30 1 1.8652 5.9266 -0.4104 31 1 4.1840 5.7164 -0.1369 32 1 6.5527 5.3671 -3.5106 33 1 6.6954 4.3558 -2.0530 34 1 5.3629 4.0798 -3.2004 35 1 8.1321 9.1522 -2.1036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602859946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:04 Heat of formation + Delta-G solvation = 7.709222 kcal Electronic energy + Delta-G solvation = -17121.445671 eV Core-core repulsion = 14348.444277 eV Total energy + Delta-G solvation = -2773.001394 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.22572 -38.77865 -37.17549 -35.65898 -34.85632 -33.10923 -30.52983 -29.17554 -27.21619 -25.96665 -25.38164 -22.89322 -22.73881 -21.50665 -19.15297 -18.41816 -18.06750 -17.28648 -16.44220 -16.19229 -15.71616 -15.34813 -15.04667 -14.74270 -14.27097 -14.03317 -13.73502 -13.50549 -13.34976 -13.13516 -12.89801 -12.85472 -12.76818 -12.55567 -12.49250 -12.16885 -12.09160 -11.76185 -11.43574 -11.14953 -10.78355 -10.52272 -9.36114 -8.30144 -6.36289 0.16692 1.18606 1.34352 1.37697 1.38690 1.48986 2.32214 2.82884 3.04558 3.31094 3.51325 3.77079 3.98918 4.09902 4.16758 4.31564 4.35440 4.40665 4.50740 4.62613 4.70693 4.71803 4.82536 4.86350 4.93662 4.97749 5.02478 5.13185 5.28306 5.45125 5.57848 5.89929 6.38848 6.52784 6.74626 7.29631 7.32269 8.86487 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049131 B = 0.005210 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.765551 B = 5373.136539 C = 5484.769473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.024 4.024 3 C 0.162 3.838 4 N -0.327 5.327 5 N -0.309 5.309 6 C 0.186 3.814 7 C 0.176 3.824 8 H 0.118 0.882 9 C -0.167 4.167 10 N -0.675 5.675 11 C 0.192 3.808 12 H 0.020 0.980 13 C -0.140 4.140 14 C -0.527 4.527 15 H 0.037 0.963 16 C 0.015 3.985 17 N -0.947 5.947 18 Si 0.953 3.047 19 H -0.268 1.268 20 H -0.239 1.239 21 H -0.299 1.299 22 O -0.229 6.229 23 H 0.105 0.895 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.348 0.652 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.286 -16.617 -4.271 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 C -0.049 4.049 4 N -0.173 5.173 5 N -0.154 5.154 6 C -0.027 4.027 7 C 0.064 3.936 8 H 0.136 0.864 9 C -0.227 4.227 10 N -0.308 5.308 11 C 0.083 3.917 12 H 0.038 0.962 13 C -0.197 4.197 14 C -0.565 4.565 15 H 0.055 0.945 16 C -0.183 4.183 17 N -0.586 5.586 18 Si 0.780 3.220 19 H -0.195 1.195 20 H -0.162 1.162 21 H -0.227 1.227 22 O -0.108 6.108 23 H 0.123 0.877 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.167 0.833 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.665 -16.706 -3.102 22.446 hybrid contribution 0.095 0.955 -1.464 1.751 sum -14.571 -15.752 -4.567 21.938 Atomic orbital electron populations 1.21796 0.91550 1.04799 1.02268 1.20525 0.97866 0.80413 1.07470 1.29082 0.97838 0.99030 0.78964 1.74306 1.16625 0.99067 1.27262 1.74303 1.17105 1.13524 1.10485 1.28282 0.96173 0.86885 0.91388 1.19953 0.91128 0.86875 0.95653 0.86427 1.22414 0.98286 0.98468 1.03494 1.60159 1.18451 1.41440 1.10734 1.19427 0.91995 0.90306 0.89926 0.96239 1.22072 0.99946 0.98962 0.98767 1.21309 1.24499 1.16555 0.94127 0.94483 1.25821 0.94280 0.94226 1.03973 1.70048 1.27737 1.22895 1.37953 0.85788 0.80499 0.76274 0.79466 1.19472 1.16217 1.22675 1.84766 1.64249 1.23018 1.38772 0.87670 0.92936 0.92461 0.86140 0.85822 0.90067 0.89800 0.92073 0.83254 0.94376 0.93602 0.92166 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.89 71.98 0.71 -0.88 16 2 C -0.02 -0.34 6.56 29.85 0.20 -0.14 16 3 C 0.16 4.27 7.73 88.34 0.68 4.96 16 4 N -0.33 -11.11 12.22 -165.50 -2.02 -13.13 16 5 N -0.31 -11.66 12.22 -165.50 -2.02 -13.68 16 6 C 0.19 6.21 7.32 88.34 0.65 6.86 16 7 C 0.18 5.63 2.94 44.17 0.13 5.76 16 8 H 0.12 3.37 7.11 -2.39 -0.02 3.35 16 9 C -0.17 -4.56 9.13 71.98 0.66 -3.90 16 10 N -0.68 -27.15 6.03 -477.15 -2.88 -30.03 16 11 C 0.19 8.50 2.00 44.17 0.09 8.59 16 12 H 0.02 0.84 6.17 -2.39 -0.01 0.83 16 13 C -0.14 -5.73 8.88 71.98 0.64 -5.10 16 14 C -0.53 -29.32 9.17 25.60 0.23 -29.08 16 15 H 0.04 2.33 7.86 -2.91 -0.02 2.30 16 16 C 0.01 0.85 5.45 84.66 0.46 1.31 16 17 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 18 Si 0.95 43.05 24.37 68.60 1.67 44.72 16 19 H -0.27 -11.69 6.87 99.48 0.68 -11.00 16 20 H -0.24 -9.59 6.53 99.48 0.65 -8.94 16 21 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 22 O -0.23 -6.66 10.87 -3.69 -0.04 -6.70 16 23 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 2.22 7.43 -2.39 -0.02 2.21 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.77 8.13 -2.39 -0.02 1.75 16 31 H 0.35 14.86 7.96 -89.70 -0.71 14.15 16 32 H 0.04 1.58 3.27 -2.39 -0.01 1.57 16 33 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 2.04 7.43 -2.39 -0.02 2.02 16 35 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -70.18 289.93 -0.24 -70.42 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.30 Total: 18.17 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.45 Total: -11.63 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -6.62 Total: -114.98 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.04 Total: -6.70 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.67 Total: 44.72 kcal Total: -70.18 -0.24 -70.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602859946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.132 kcal (2) G-P(sol) polarization free energy of solvation -70.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds