Wall clock time and date at job start Sun Mar 29 2020 22:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46977 * 2 1 4 4 N 1.30273 * 126.28302 * 89.97988 * 3 2 1 5 5 N 1.28661 * 109.38403 * 179.97438 * 4 3 2 6 6 C 1.30280 * 109.37790 * 359.97438 * 5 4 3 7 7 C 1.50698 * 126.27741 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47122 * 195.02650 * 7 6 5 9 9 C 1.53006 * 109.47184 * 75.02764 * 7 6 5 10 10 N 1.46899 * 109.47365 * 315.02528 * 7 6 5 11 11 C 1.46903 * 110.99807 * 205.00210 * 10 7 6 12 12 H 1.08997 * 109.47215 * 324.99479 * 11 10 7 13 13 C 1.53001 * 109.47293 * 85.00045 * 11 10 7 14 14 C 1.50699 * 109.47050 * 204.99742 * 11 10 7 15 15 H 1.08004 * 120.00262 * 0.02562 * 14 11 10 16 16 C 1.37882 * 120.00329 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99383 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00202 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.46772 * 90.00280 * 18 16 14 20 20 H 1.48498 * 109.47208 * 210.00522 * 18 16 14 21 21 H 1.48505 * 109.47088 * 330.00415 * 18 16 14 22 22 O 1.34354 * 107.43580 * 0.24185 * 6 5 4 23 23 H 1.09004 * 109.46714 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.46883 * 299.99645 * 1 2 3 25 25 H 1.09001 * 109.47262 * 59.99798 * 1 2 3 26 26 H 1.09007 * 109.47219 * 240.00092 * 2 1 3 27 27 H 1.09001 * 109.47262 * 120.00202 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99404 * 9 7 6 29 29 H 1.08993 * 109.46955 * 59.99842 * 9 7 6 30 30 H 1.09000 * 109.47050 * 179.97438 * 9 7 6 31 31 H 1.00901 * 110.99898 * 328.95530 * 10 7 6 32 32 H 1.08995 * 109.47229 * 179.97438 * 13 11 10 33 33 H 1.08998 * 109.46899 * 299.99701 * 13 11 10 34 34 H 1.09004 * 109.47059 * 59.99551 * 13 11 10 35 35 H 0.97005 * 119.99604 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2889 2.1478 1.0501 5 7 2.6999 3.3082 0.6761 6 6 2.7199 3.3609 -0.6254 7 6 3.1379 4.5414 -1.4637 8 1 2.8044 4.3939 -2.4909 9 6 4.6621 4.6723 -1.4363 10 7 2.5315 5.7652 -0.9230 11 6 2.3991 6.7920 -1.9653 12 1 3.2451 6.7264 -2.6494 13 6 1.0986 6.5681 -2.7395 14 6 2.3746 8.1564 -1.3261 15 1 2.4502 8.2515 -0.2529 16 6 2.2566 9.2837 -2.1113 17 7 2.1650 9.1679 -3.4181 18 14 2.2255 10.9750 -1.3188 19 1 3.6115 11.4971 -1.2122 20 1 1.4119 11.8969 -2.1515 21 1 1.6283 10.8753 0.0372 22 8 2.2940 2.1717 -1.0831 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 4.9957 4.8199 -0.4091 29 1 5.1120 3.7642 -1.8375 30 1 4.9645 5.5259 -2.0430 31 1 1.6396 5.5679 -0.4944 32 1 1.0001 7.3301 -3.5125 33 1 1.1163 5.5812 -3.2019 34 1 0.2526 6.6336 -2.0553 35 1 2.0816 9.9609 -3.9706 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602859954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:10 Heat of formation + Delta-G solvation = 5.103021 kcal Electronic energy + Delta-G solvation = -17085.926655 eV Core-core repulsion = 14312.812248 eV Total energy + Delta-G solvation = -2773.114407 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.32148 -38.63700 -37.25665 -35.68196 -34.84318 -32.67506 -30.38304 -28.88665 -27.26170 -25.94234 -25.40470 -22.95015 -22.77177 -21.55368 -18.86828 -18.46160 -17.96633 -16.96036 -16.86002 -16.18690 -15.72204 -15.08468 -14.91627 -14.57619 -13.87453 -13.74907 -13.55204 -13.37260 -13.16454 -13.03252 -12.96619 -12.83067 -12.79934 -12.59785 -12.39503 -12.24943 -12.12704 -11.91798 -11.80094 -11.09870 -10.58791 -10.47487 -9.19094 -8.10426 -6.20014 0.06617 1.12900 1.29173 1.44823 1.45979 1.56516 2.45225 2.74211 3.18868 3.22766 3.50784 3.84190 4.03182 4.13308 4.17162 4.26019 4.32283 4.42891 4.65342 4.75788 4.78111 4.83398 4.84240 4.90833 4.99460 5.05249 5.24464 5.26066 5.34438 5.67692 5.77352 6.21113 6.50395 6.57870 6.90886 7.24545 7.48984 8.95470 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042473 B = 0.005026 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.090142 B = 5569.348330 C = 5644.408972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.024 4.024 3 C 0.167 3.833 4 N -0.324 5.324 5 N -0.294 5.294 6 C 0.165 3.835 7 C 0.183 3.817 8 H 0.072 0.928 9 C -0.126 4.126 10 N -0.667 5.667 11 C 0.217 3.783 12 H 0.024 0.976 13 C -0.161 4.161 14 C -0.514 4.514 15 H 0.052 0.948 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.958 3.042 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.273 1.273 22 O -0.229 6.229 23 H 0.107 0.893 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.123 0.877 27 H 0.130 0.870 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.331 0.669 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 -18.065 1.842 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.062 4.062 3 C -0.045 4.045 4 N -0.170 5.170 5 N -0.140 5.140 6 C -0.047 4.047 7 C 0.071 3.929 8 H 0.090 0.910 9 C -0.184 4.184 10 N -0.299 5.299 11 C 0.110 3.890 12 H 0.042 0.958 13 C -0.220 4.220 14 C -0.553 4.553 15 H 0.071 0.929 16 C -0.184 4.184 17 N -0.559 5.559 18 Si 0.784 3.216 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.198 1.198 22 O -0.109 6.109 23 H 0.126 0.874 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.141 0.859 27 H 0.148 0.852 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.148 0.852 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.453 -17.354 3.174 17.648 hybrid contribution -0.938 0.588 -1.423 1.803 sum -1.391 -16.766 1.751 16.915 Atomic orbital electron populations 1.21816 0.91946 1.04873 1.02085 1.20560 0.97519 0.80277 1.07819 1.29187 0.97274 0.99125 0.78873 1.74357 1.16852 0.98721 1.27061 1.74407 1.16766 1.12809 1.09983 1.28263 0.97650 0.87184 0.91633 1.20059 0.97805 0.81508 0.93485 0.90983 1.21755 0.90738 1.02713 1.03222 1.60937 1.29835 1.06274 1.32899 1.19088 0.93031 0.88918 0.87991 0.95838 1.22303 0.99214 0.99077 1.01433 1.21351 1.49243 0.91135 0.93584 0.92937 1.25617 0.95017 1.02450 0.95336 1.69978 1.51301 1.30097 1.04526 0.85550 0.78036 0.79645 0.78320 1.20227 1.20850 1.19827 1.84799 1.63812 1.23295 1.38946 0.87392 0.93006 0.92967 0.85867 0.85245 0.92075 0.90333 0.91053 0.85163 0.91256 0.95398 0.95338 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.89 71.98 0.71 -1.14 16 2 C -0.02 -0.32 6.56 29.85 0.20 -0.13 16 3 C 0.17 4.40 7.73 88.34 0.68 5.09 16 4 N -0.32 -10.93 12.22 -165.50 -2.02 -12.95 16 5 N -0.29 -11.21 12.22 -165.51 -2.02 -13.24 16 6 C 0.17 5.77 6.97 88.34 0.62 6.39 16 7 C 0.18 6.58 2.97 44.17 0.13 6.71 16 8 H 0.07 2.51 7.11 -2.39 -0.02 2.49 16 9 C -0.13 -4.10 9.38 71.98 0.68 -3.43 16 10 N -0.67 -28.77 6.03 -477.15 -2.88 -31.65 16 11 C 0.22 10.70 2.38 44.17 0.11 10.81 16 12 H 0.02 1.24 7.11 -2.39 -0.02 1.22 16 13 C -0.16 -7.56 8.92 71.98 0.64 -6.92 16 14 C -0.51 -28.36 8.84 25.60 0.23 -28.13 16 15 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 16 C 0.01 0.79 5.30 84.66 0.45 1.23 16 17 N -0.92 -51.63 11.32 21.45 0.24 -51.39 16 18 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 O -0.23 -6.94 10.87 -3.56 -0.04 -6.98 16 23 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 30 H 0.07 2.45 7.43 -2.39 -0.02 2.44 16 31 H 0.33 14.38 8.09 -89.69 -0.73 13.66 16 32 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 33 H 0.03 1.13 7.43 -2.39 -0.02 1.12 16 34 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 35 H 0.26 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -64.57 296.97 0.11 -64.46 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.36 Total: 15.34 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 4.44 Total: -9.52 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -6.68 Total: -109.23 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.04 Total: -6.98 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.57 0.11 -64.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602859954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.567 kcal (2) G-P(sol) polarization free energy of solvation -64.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds