Wall clock time and date at job start Sun Mar 29 2020 22:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47259 * 2 1 4 4 C 1.50701 * 109.47121 * 120.00277 * 2 1 3 5 5 N 1.30272 * 126.28028 * 299.97110 * 4 2 1 6 6 N 1.28674 * 109.38187 * 180.02562 * 5 4 2 7 7 C 1.30276 * 109.37873 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.28250 * 179.97438 * 7 6 5 9 9 N 1.46892 * 109.47505 * 90.02145 * 8 7 6 10 10 C 1.46898 * 111.00346 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.46929 * 35.00170 * 10 9 8 12 12 C 1.52997 * 109.47081 * 275.00245 * 10 9 8 13 13 C 1.50701 * 109.47425 * 154.99498 * 10 9 8 14 14 H 1.07999 * 119.99685 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00149 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99984 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99991 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47414 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47058 * 120.01004 * 17 15 13 20 20 H 1.48503 * 109.47266 * 240.00478 * 17 15 13 21 21 O 1.34364 * 126.28208 * 119.97260 * 4 2 1 22 22 H 1.09009 * 109.46915 * 300.00227 * 1 2 3 23 23 H 1.08998 * 109.47091 * 59.99232 * 1 2 3 24 24 H 1.09001 * 109.47413 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46911 * 239.99791 * 2 1 3 26 26 H 1.09001 * 109.47271 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47441 * 299.99941 * 3 2 1 28 28 H 1.08999 * 109.47330 * 60.00047 * 3 2 1 29 29 H 1.09002 * 109.46698 * 210.02579 * 8 7 6 30 30 H 1.09002 * 109.47090 * 330.01523 * 8 7 6 31 31 H 1.00898 * 111.00051 * 303.95468 * 9 8 7 32 32 H 1.09000 * 109.47153 * 179.97438 * 12 10 9 33 33 H 1.08998 * 109.46829 * 299.99304 * 12 10 9 34 34 H 1.08998 * 109.47534 * 59.99704 * 12 10 9 35 35 H 0.97001 * 119.99600 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7947 -0.3735 2.4662 6 7 2.3817 -1.2031 3.2554 7 6 3.0142 -2.0972 2.5500 8 6 3.8277 -3.2458 3.0883 9 7 2.9618 -4.4194 3.2634 10 6 3.7226 -5.5616 3.7874 11 1 4.4883 -5.2031 4.4756 12 6 4.3872 -6.3067 2.6282 13 6 2.7900 -6.4948 4.5157 14 1 1.7373 -6.2629 4.5822 15 6 3.2805 -7.6452 5.0962 16 7 4.5623 -7.9279 5.0147 17 14 2.1243 -8.8023 5.9982 18 1 0.7424 -8.2611 5.9465 19 1 2.1568 -10.1385 5.3510 20 1 2.5546 -8.9277 7.4140 21 8 2.8076 -1.8077 1.2542 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 4.6268 -3.4853 2.3868 30 1 4.2595 -2.9663 4.0493 31 1 2.1765 -4.2038 3.8591 32 1 4.9521 -7.1539 3.0170 33 1 3.6216 -6.6651 1.9402 34 1 5.0618 -5.6317 2.1015 35 1 4.9074 -8.7371 5.4234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602860671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:44 Heat of formation + Delta-G solvation = 24.063260 kcal Electronic energy + Delta-G solvation = -16759.844602 eV Core-core repulsion = 13987.552373 eV Total energy + Delta-G solvation = -2772.292229 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.99870 -36.48325 -35.96610 -35.80272 -32.95025 -30.76131 -28.48432 -27.49811 -25.77268 -24.90432 -24.21389 -21.94929 -20.86169 -19.97072 -17.29542 -17.08307 -16.63514 -15.46859 -15.02111 -14.77237 -14.25229 -14.05704 -13.78841 -13.37621 -12.59926 -12.51513 -12.32918 -12.14201 -12.06609 -11.63588 -11.59014 -11.50998 -11.32689 -10.99707 -10.83879 -10.63411 -10.46027 -10.23864 -10.14418 -9.32574 -8.93378 -8.56274 -7.57714 -6.10448 -4.17236 1.35081 2.41241 2.57884 3.26156 3.34192 3.38939 3.89194 4.34913 4.42213 4.70506 4.70703 4.87430 5.19406 5.24058 5.30221 5.32594 5.44973 5.51554 5.56337 5.62704 5.74612 5.85131 5.91609 5.98554 6.03379 6.72379 7.00189 7.06059 7.30605 7.68529 7.74348 8.11229 8.17996 8.45152 8.52101 8.90180 9.49137 10.96050 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.046443 B = 0.004457 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.748267 B = 6281.390537 C = 6469.864180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.006 3.994 3 C -0.144 4.144 4 C 0.151 3.849 5 N -0.286 5.286 6 N -0.294 5.294 7 C 0.190 3.810 8 C 0.149 3.851 9 N -0.683 5.683 10 C 0.213 3.787 11 H 0.009 0.991 12 C -0.127 4.127 13 C -0.520 4.520 14 H 0.062 0.938 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 O -0.218 6.218 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.099 0.901 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.340 0.660 32 H 0.084 0.916 33 H 0.034 0.966 34 H 0.005 0.995 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 14.015 -10.084 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 C -0.202 4.202 4 C -0.061 4.061 5 N -0.132 5.132 6 N -0.141 5.141 7 C -0.021 4.021 8 C 0.018 3.982 9 N -0.317 5.317 10 C 0.106 3.894 11 H 0.026 0.974 12 C -0.185 4.185 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.210 1.210 21 O -0.096 6.096 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.025 0.975 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.455 14.301 -9.648 17.593 hybrid contribution 0.060 -1.136 0.414 1.210 sum -3.395 13.165 -9.234 16.435 Atomic orbital electron populations 1.21865 0.91918 1.03132 1.03380 1.19668 0.96927 0.95167 0.89639 1.21859 1.01538 0.93358 1.03441 1.27925 0.93611 0.86317 0.98241 1.74259 1.19067 1.21457 0.98460 1.74419 1.10155 1.02767 1.26794 1.28380 0.98397 0.98742 0.76593 1.20477 0.93190 0.84853 0.99698 1.60854 1.10966 1.03411 1.56473 1.19199 0.92413 0.85934 0.91839 0.97369 1.21756 0.98665 1.00688 0.97434 1.21234 0.94662 1.06343 1.33655 0.91981 1.24901 0.95231 0.97689 0.96049 1.69896 1.12339 1.25971 1.44529 0.86418 0.80996 0.80608 0.79274 1.19693 1.20912 1.20970 1.84818 1.54188 1.39109 1.31498 0.91102 0.90775 0.91953 0.88243 0.92202 0.90762 0.91097 0.88429 0.90806 0.84161 0.89709 0.94729 0.97549 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.18 37.16 0.34 -0.91 16 2 C 0.01 0.06 3.39 -91.77 -0.31 -0.25 16 3 C -0.14 -1.14 9.17 37.15 0.34 -0.80 16 4 C 0.15 2.22 6.99 -12.94 -0.09 2.13 16 5 N -0.29 -4.89 12.22 32.55 0.40 -4.50 16 6 N -0.29 -5.52 12.22 32.55 0.40 -5.13 16 7 C 0.19 3.40 7.99 -12.94 -0.10 3.29 16 8 C 0.15 2.67 6.11 -4.98 -0.03 2.64 16 9 N -0.68 -14.54 6.29 -109.23 -0.69 -15.22 16 10 C 0.21 5.23 2.60 -68.87 -0.18 5.05 16 11 H 0.01 0.23 7.80 -51.92 -0.41 -0.18 16 12 C -0.13 -3.05 9.19 37.16 0.34 -2.71 16 13 C -0.52 -14.05 8.59 -34.44 -0.30 -14.34 16 14 H 0.06 1.67 7.62 -52.49 -0.40 1.27 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 16 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 17 Si 0.90 21.05 29.54 -169.99 -5.02 16.02 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 O -0.22 -3.65 10.87 5.37 0.06 -3.59 16 22 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.10 1.64 7.44 -51.93 -0.39 1.26 16 30 H 0.07 1.28 8.06 -51.93 -0.42 0.86 16 31 H 0.34 7.34 8.22 -39.29 -0.32 7.02 16 32 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 298.39 15.07 4.50 4.50 Total: -1.00 -29.76 298.39 -4.96 -34.72 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.15 Total: 1.63 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -0.08 Total: -4.27 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.74 Total: -49.02 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: 0.06 Total: -3.59 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.76 -4.96 -34.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.787 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds