Wall clock time and date at job start Sun Mar 29 2020 22:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47259 * 2 1 4 4 C 1.50701 * 109.47121 * 120.00277 * 2 1 3 5 5 N 1.30272 * 126.28028 * 299.97110 * 4 2 1 6 6 N 1.28674 * 109.38187 * 180.02562 * 5 4 2 7 7 C 1.30276 * 109.37873 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.28250 * 179.97438 * 7 6 5 9 9 N 1.46892 * 109.47505 * 90.02145 * 8 7 6 10 10 C 1.46898 * 111.00346 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.46929 * 35.00170 * 10 9 8 12 12 C 1.52997 * 109.47081 * 275.00245 * 10 9 8 13 13 C 1.50701 * 109.47425 * 154.99498 * 10 9 8 14 14 H 1.07999 * 119.99685 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00149 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99984 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99991 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47414 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47058 * 120.01004 * 17 15 13 20 20 H 1.48503 * 109.47266 * 240.00478 * 17 15 13 21 21 O 1.34364 * 126.28208 * 119.97260 * 4 2 1 22 22 H 1.09009 * 109.46915 * 300.00227 * 1 2 3 23 23 H 1.08998 * 109.47091 * 59.99232 * 1 2 3 24 24 H 1.09001 * 109.47413 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46911 * 239.99791 * 2 1 3 26 26 H 1.09001 * 109.47271 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47441 * 299.99941 * 3 2 1 28 28 H 1.08999 * 109.47330 * 60.00047 * 3 2 1 29 29 H 1.09002 * 109.46698 * 210.02579 * 8 7 6 30 30 H 1.09002 * 109.47090 * 330.01523 * 8 7 6 31 31 H 1.00898 * 111.00051 * 303.95468 * 9 8 7 32 32 H 1.09000 * 109.47153 * 179.97438 * 12 10 9 33 33 H 1.08998 * 109.46829 * 299.99304 * 12 10 9 34 34 H 1.08998 * 109.47534 * 59.99704 * 12 10 9 35 35 H 0.97001 * 119.99600 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7947 -0.3735 2.4662 6 7 2.3817 -1.2031 3.2554 7 6 3.0142 -2.0972 2.5500 8 6 3.8277 -3.2458 3.0883 9 7 2.9618 -4.4194 3.2634 10 6 3.7226 -5.5616 3.7874 11 1 4.4883 -5.2031 4.4756 12 6 4.3872 -6.3067 2.6282 13 6 2.7900 -6.4948 4.5157 14 1 1.7373 -6.2629 4.5822 15 6 3.2805 -7.6452 5.0962 16 7 4.5623 -7.9279 5.0147 17 14 2.1243 -8.8023 5.9982 18 1 0.7424 -8.2611 5.9465 19 1 2.1568 -10.1385 5.3510 20 1 2.5546 -8.9277 7.4140 21 8 2.8076 -1.8077 1.2542 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 4.6268 -3.4853 2.3868 30 1 4.2595 -2.9663 4.0493 31 1 2.1765 -4.2038 3.8591 32 1 4.9521 -7.1539 3.0170 33 1 3.6216 -6.6651 1.9402 34 1 5.0618 -5.6317 2.1015 35 1 4.9074 -8.7371 5.4234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602860671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:44 Heat of formation + Delta-G solvation = 0.253960 kcal Electronic energy + Delta-G solvation = -16760.877051 eV Core-core repulsion = 13987.552373 eV Total energy + Delta-G solvation = -2773.324678 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.30248 -38.08788 -37.25978 -36.83464 -34.81709 -32.34909 -30.11630 -28.13964 -27.56859 -26.67236 -25.35437 -23.36635 -21.89685 -21.78964 -18.92375 -18.41356 -18.12945 -17.03399 -16.47876 -16.10401 -15.73895 -15.47586 -15.18997 -14.43844 -14.16105 -13.82372 -13.54186 -13.29728 -13.07766 -13.05617 -12.90683 -12.79306 -12.71639 -12.40196 -12.31865 -12.27997 -12.21833 -12.03479 -11.74569 -10.96558 -10.65369 -10.56382 -9.33037 -8.16387 -6.29993 0.07186 1.18430 1.26920 1.41361 1.43857 1.55087 2.40497 2.71797 3.13153 3.30173 3.60160 3.71497 3.99364 4.06011 4.11291 4.21579 4.43664 4.53123 4.61513 4.76008 4.80824 4.86507 4.87286 5.02399 5.05966 5.13663 5.27759 5.31916 5.39183 5.61967 5.78768 6.17712 6.26558 6.55426 6.86253 7.20696 7.39987 8.89453 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.046443 B = 0.004457 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.748267 B = 6281.390537 C = 6469.864180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.002 3.998 3 C -0.140 4.140 4 C 0.168 3.832 5 N -0.314 5.314 6 N -0.314 5.314 7 C 0.182 3.818 8 C 0.155 3.845 9 N -0.683 5.683 10 C 0.217 3.783 11 H -0.012 1.012 12 C -0.116 4.116 13 C -0.541 4.541 14 H 0.056 0.944 15 C 0.019 3.981 16 N -0.913 5.913 17 Si 0.961 3.039 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.279 1.279 21 O -0.224 6.224 22 H 0.057 0.943 23 H 0.109 0.891 24 H 0.050 0.950 25 H 0.122 0.878 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.337 0.663 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.030 0.970 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.885 14.779 -11.452 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 C -0.197 4.197 4 C -0.044 4.044 5 N -0.159 5.159 6 N -0.161 5.161 7 C -0.031 4.031 8 C 0.024 3.976 9 N -0.316 5.316 10 C 0.109 3.891 11 H 0.005 0.995 12 C -0.175 4.175 13 C -0.579 4.579 14 H 0.074 0.926 15 C -0.181 4.181 16 N -0.552 5.552 17 Si 0.787 3.213 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.205 1.205 21 O -0.103 6.103 22 H 0.077 0.923 23 H 0.127 0.873 24 H 0.069 0.931 25 H 0.140 0.860 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.097 0.903 31 H 0.154 0.846 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.139 15.091 -11.018 19.138 hybrid contribution 0.251 -1.271 0.763 1.503 sum -3.888 13.820 -10.255 17.643 Atomic orbital electron populations 1.21886 0.90838 1.02746 1.04507 1.20153 0.97659 0.95894 0.88045 1.21873 1.01347 0.92024 1.04493 1.29096 0.91201 0.84922 0.99161 1.74218 1.20304 1.21975 0.99434 1.74360 1.10535 1.03342 1.27891 1.28131 0.98966 0.98850 0.77119 1.20417 0.92915 0.83826 1.00434 1.60728 1.11031 1.04081 1.55747 1.19009 0.91768 0.86733 0.91546 0.99450 1.21584 0.98538 1.00290 0.97077 1.21535 0.94814 1.07229 1.34358 0.92569 1.25643 0.96640 0.99093 0.96749 1.69999 1.13654 1.26466 1.45076 0.85456 0.79091 0.78610 0.78149 1.19486 1.20424 1.20497 1.84829 1.54699 1.39902 1.30882 0.92350 0.87284 0.93085 0.86000 0.92528 0.87399 0.92347 0.87086 0.90308 0.84597 0.91966 0.95338 0.95078 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.18 71.98 0.66 -1.43 16 2 C 0.00 0.04 3.39 -11.54 -0.04 0.00 16 3 C -0.14 -1.84 9.17 71.98 0.66 -1.18 16 4 C 0.17 4.74 6.99 88.34 0.62 5.35 16 5 N -0.31 -10.64 12.22 -165.50 -2.02 -12.66 16 6 N -0.31 -11.81 12.22 -165.50 -2.02 -13.83 16 7 C 0.18 6.41 7.99 88.34 0.71 7.12 16 8 C 0.15 5.50 6.11 85.56 0.52 6.02 16 9 N -0.68 -29.04 6.29 -499.48 -3.14 -32.18 16 10 C 0.22 10.73 2.60 44.17 0.11 10.84 16 11 H -0.01 -0.64 7.80 -2.38 -0.02 -0.66 16 12 C -0.12 -5.57 9.19 71.98 0.66 -4.90 16 13 C -0.54 -29.40 8.59 25.60 0.22 -29.18 16 14 H 0.06 3.05 7.62 -2.91 -0.02 3.02 16 15 C 0.02 1.01 5.30 84.65 0.45 1.46 16 16 N -0.91 -51.17 11.32 21.45 0.24 -50.93 16 17 Si 0.96 43.11 29.54 68.60 2.03 45.13 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 O -0.22 -7.28 10.87 -3.71 -0.04 -7.32 16 22 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 23 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.11 3.62 7.44 -2.39 -0.02 3.60 16 30 H 0.08 2.73 8.06 -2.39 -0.02 2.72 16 31 H 0.34 14.67 8.22 -89.70 -0.74 13.93 16 32 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.03 1.28 7.45 -2.39 -0.02 1.26 16 35 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -63.58 298.39 -0.04 -63.62 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.35 Total: 14.06 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 4.57 Total: -5.89 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -6.95 Total: -109.61 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.04 Total: -7.32 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -63.58 -0.04 -63.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.877 kcal (2) G-P(sol) polarization free energy of solvation -63.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds