Wall clock time and date at job start Sun Mar 29 2020 22:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47448 * 2 1 4 4 C 1.50698 * 109.47285 * 120.00307 * 2 1 3 5 5 H 1.07997 * 120.00102 * 120.00106 * 4 2 1 6 6 C 1.37872 * 120.00018 * 299.99874 * 4 2 1 7 7 N 1.31519 * 119.99753 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00326 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46924 * 60.00172 * 8 6 4 10 10 H 1.48498 * 109.47356 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46964 * 300.00452 * 8 6 4 12 12 N 1.46903 * 109.47134 * 240.00403 * 2 1 3 13 13 C 1.46897 * 111.00344 * 84.99968 * 12 2 1 14 14 C 1.52992 * 109.47647 * 180.02562 * 13 12 2 15 15 H 1.09004 * 109.47256 * 59.99776 * 14 13 12 16 16 O 1.42903 * 109.47063 * 299.99964 * 14 13 12 17 17 C 1.53002 * 109.47564 * 179.97438 * 14 13 12 18 18 N 1.46500 * 109.47148 * 184.99803 * 17 14 13 19 19 C 1.34946 * 126.03644 * 124.95038 * 18 17 14 20 20 C 1.35316 * 107.74870 * 180.02562 * 19 18 17 21 21 C 1.39875 * 107.91722 * 0.02562 * 20 19 18 22 22 N 1.30829 * 108.20298 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.47065 * 59.99481 * 1 2 3 24 24 H 1.09002 * 109.47233 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47369 * 299.99997 * 1 2 3 26 26 H 0.97001 * 119.99543 * 180.02562 * 7 6 4 27 27 H 1.00903 * 110.99777 * 208.95622 * 12 2 1 28 28 H 1.09004 * 109.46975 * 59.99785 * 13 12 2 29 29 H 1.09005 * 109.47318 * 300.00313 * 13 12 2 30 30 H 0.96700 * 113.99890 * 299.99883 * 16 14 13 31 31 H 1.08996 * 109.46833 * 64.99795 * 17 14 13 32 32 H 1.08993 * 109.46978 * 305.00271 * 17 14 13 33 33 H 1.07999 * 126.12479 * 0.04451 * 19 18 17 34 34 H 1.07999 * 126.03957 * 180.26092 * 20 19 18 35 35 H 1.08004 * 125.89587 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8295 2.6033 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1210 4.0080 10 1 1.8260 -0.4208 5.2204 11 1 1.8259 -2.5204 4.0075 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5950 -0.5329 -3.5745 15 1 1.9183 -1.3564 -3.8031 16 8 3.8999 -1.0496 -3.3054 17 6 2.6598 0.4200 -4.7698 18 7 3.0358 -0.3288 -5.9715 19 6 2.3474 -0.3658 -7.1316 20 6 3.0239 -1.1664 -7.9873 21 6 4.1647 -1.6352 -7.3274 22 7 4.1723 -1.1344 -6.1187 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7088 1.1611 3.4844 27 1 2.9173 -1.1205 -1.0288 28 1 2.7588 1.0463 -2.1182 29 1 1.0870 0.6165 -2.5526 30 1 4.5555 -0.3711 -3.0936 31 1 3.4022 1.1944 -4.5771 32 1 1.6839 0.8816 -4.9197 33 1 1.4223 0.1512 -7.3398 34 1 2.7362 -1.3990 -9.0020 35 1 4.9103 -2.2963 -7.7437 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861943.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:49 Heat of formation + Delta-G solvation = 27.746116 kcal Electronic energy + Delta-G solvation = -16781.187022 eV Core-core repulsion = 14009.054493 eV Total energy + Delta-G solvation = -2772.132529 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.09627 -37.88841 -35.31492 -33.19207 -32.44473 -30.18327 -29.66995 -27.75167 -25.37579 -24.42956 -21.66497 -21.01459 -20.67686 -19.76554 -17.44333 -16.59088 -16.27484 -15.64222 -15.01204 -14.73013 -14.28490 -13.99784 -13.61816 -13.40642 -13.09326 -12.83789 -12.51391 -12.17364 -11.67932 -11.42198 -10.97135 -10.94293 -10.73417 -10.54766 -10.35482 -10.20253 -10.14756 -9.80954 -9.30138 -8.86994 -8.56598 -8.49341 -7.32411 -6.05245 -4.11627 1.92778 2.50237 2.87115 3.30837 3.34797 3.38445 4.21656 4.39709 4.62898 4.77473 4.81330 5.02619 5.16111 5.26304 5.35396 5.47205 5.56544 5.71318 5.76921 5.97643 6.05836 6.27390 6.65257 6.81453 6.98613 7.07758 7.17879 7.44189 7.75292 7.75968 7.83683 7.88958 8.24010 8.35251 8.64136 8.98931 9.54620 11.01133 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.055914 B = 0.004267 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.645945 B = 6560.419576 C = 6890.186712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.683 5.683 13 C 0.032 3.968 14 C 0.103 3.897 15 H 0.105 0.895 16 O -0.537 6.537 17 C 0.098 3.902 18 N -0.365 5.365 19 C 0.045 3.955 20 C -0.279 4.279 21 C 0.029 3.971 22 N -0.266 5.266 23 H 0.002 0.998 24 H 0.032 0.968 25 H 0.081 0.919 26 H 0.262 0.738 27 H 0.339 0.661 28 H 0.023 0.977 29 H 0.072 0.928 30 H 0.368 0.632 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.170 0.830 34 H 0.143 0.857 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 0.859 -17.379 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.315 5.315 13 C -0.099 4.099 14 C 0.042 3.958 15 H 0.123 0.877 16 O -0.341 6.341 17 C -0.024 4.024 18 N -0.147 5.147 19 C -0.101 4.101 20 C -0.309 4.309 21 C -0.157 4.157 22 N -0.087 5.087 23 H 0.021 0.979 24 H 0.051 0.949 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.158 0.842 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.214 0.786 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.187 0.813 34 H 0.161 0.839 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.064 0.314 -16.261 16.394 hybrid contribution 0.659 0.722 0.323 1.030 sum 2.723 1.037 -15.937 16.201 Atomic orbital electron populations 1.21726 0.97918 0.99387 0.99273 1.19118 0.92596 0.92249 0.85637 0.98263 1.21233 1.31531 1.12589 0.90423 0.92177 1.24918 0.94998 0.94991 0.99077 1.69887 1.36613 1.22931 1.23606 0.86559 0.79116 0.79816 0.81922 1.20273 1.21298 1.20142 1.60631 1.33031 1.32278 1.05597 1.22503 1.00328 0.94486 0.92569 1.22260 0.86152 0.96360 0.91028 0.87675 1.86703 1.18682 1.36952 1.91730 1.22595 1.02047 0.94217 0.83576 1.48695 1.18092 1.37148 1.10754 1.22580 0.99099 1.01442 0.86979 1.21469 0.99392 1.07908 1.02128 1.23928 0.98947 1.00824 0.92016 1.77574 1.04006 1.08766 1.18376 0.97868 0.94914 0.90048 0.92862 0.84223 0.95875 0.90982 0.78570 0.89539 0.87766 0.81258 0.83905 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 9.19 37.16 0.34 -2.74 16 2 C 0.21 5.32 2.60 -68.87 -0.18 5.15 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.34 8.59 -34.44 -0.30 -14.63 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.40 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 N -0.68 -14.49 6.30 -107.96 -0.68 -15.17 16 13 C 0.03 0.53 5.19 -3.83 -0.02 0.51 16 14 C 0.10 1.45 3.45 -26.73 -0.09 1.36 16 15 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 16 O -0.54 -8.35 11.71 -35.23 -0.41 -8.77 16 17 C 0.10 1.08 6.18 -4.04 -0.02 1.06 16 18 N -0.36 -4.61 3.68 -61.37 -0.23 -4.83 16 19 C 0.05 0.48 11.45 -17.22 -0.20 0.28 16 20 C -0.28 -2.95 10.80 -40.01 -0.43 -3.39 16 21 C 0.03 0.35 12.03 -17.37 -0.21 0.14 16 22 N -0.27 -3.87 11.56 30.63 0.35 -3.52 16 23 H 0.00 0.05 7.45 -51.93 -0.39 -0.34 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.34 7.32 7.61 -39.29 -0.30 7.02 16 28 H 0.02 0.37 8.06 -51.93 -0.42 -0.04 16 29 H 0.07 1.16 7.44 -51.93 -0.39 0.77 16 30 H 0.37 4.68 9.05 45.56 0.41 5.09 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.88 8.07 -51.93 -0.42 0.47 16 33 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.18 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 296.29 15.07 4.46 4.46 Total: -1.00 -31.90 296.29 -6.39 -38.29 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.29 Total: 8.60 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -1.20 Total: -10.64 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.08 Total: -48.29 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.41 Total: -8.77 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.90 -6.39 -38.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861943.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.031 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds