Wall clock time and date at job start Sun Mar 29 2020 22:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47448 * 2 1 4 4 C 1.50698 * 109.47285 * 120.00307 * 2 1 3 5 5 H 1.07997 * 120.00102 * 120.00106 * 4 2 1 6 6 C 1.37872 * 120.00018 * 299.99874 * 4 2 1 7 7 N 1.31519 * 119.99753 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00326 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46924 * 60.00172 * 8 6 4 10 10 H 1.48498 * 109.47356 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46964 * 300.00452 * 8 6 4 12 12 N 1.46903 * 109.47134 * 240.00403 * 2 1 3 13 13 C 1.46897 * 111.00344 * 84.99968 * 12 2 1 14 14 C 1.52992 * 109.47647 * 180.02562 * 13 12 2 15 15 H 1.09004 * 109.47256 * 59.99776 * 14 13 12 16 16 O 1.42903 * 109.47063 * 299.99964 * 14 13 12 17 17 C 1.53002 * 109.47564 * 179.97438 * 14 13 12 18 18 N 1.46500 * 109.47148 * 184.99803 * 17 14 13 19 19 C 1.34946 * 126.03644 * 124.95038 * 18 17 14 20 20 C 1.35316 * 107.74870 * 180.02562 * 19 18 17 21 21 C 1.39875 * 107.91722 * 0.02562 * 20 19 18 22 22 N 1.30829 * 108.20298 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.47065 * 59.99481 * 1 2 3 24 24 H 1.09002 * 109.47233 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47369 * 299.99997 * 1 2 3 26 26 H 0.97001 * 119.99543 * 180.02562 * 7 6 4 27 27 H 1.00903 * 110.99777 * 208.95622 * 12 2 1 28 28 H 1.09004 * 109.46975 * 59.99785 * 13 12 2 29 29 H 1.09005 * 109.47318 * 300.00313 * 13 12 2 30 30 H 0.96700 * 113.99890 * 299.99883 * 16 14 13 31 31 H 1.08996 * 109.46833 * 64.99795 * 17 14 13 32 32 H 1.08993 * 109.46978 * 305.00271 * 17 14 13 33 33 H 1.07999 * 126.12479 * 0.04451 * 19 18 17 34 34 H 1.07999 * 126.03957 * 180.26092 * 20 19 18 35 35 H 1.08004 * 125.89587 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8295 2.6033 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1210 4.0080 10 1 1.8260 -0.4208 5.2204 11 1 1.8259 -2.5204 4.0075 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5950 -0.5329 -3.5745 15 1 1.9183 -1.3564 -3.8031 16 8 3.8999 -1.0496 -3.3054 17 6 2.6598 0.4200 -4.7698 18 7 3.0358 -0.3288 -5.9715 19 6 2.3474 -0.3658 -7.1316 20 6 3.0239 -1.1664 -7.9873 21 6 4.1647 -1.6352 -7.3274 22 7 4.1723 -1.1344 -6.1187 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7088 1.1611 3.4844 27 1 2.9173 -1.1205 -1.0288 28 1 2.7588 1.0463 -2.1182 29 1 1.0870 0.6165 -2.5526 30 1 4.5555 -0.3711 -3.0936 31 1 3.4022 1.1944 -4.5771 32 1 1.6839 0.8816 -4.9197 33 1 1.4223 0.1512 -7.3398 34 1 2.7362 -1.3990 -9.0020 35 1 4.9103 -2.2963 -7.7437 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861943.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:49 Heat of formation + Delta-G solvation = 3.172032 kcal Electronic energy + Delta-G solvation = -16782.252634 eV Core-core repulsion = 14009.054493 eV Total energy + Delta-G solvation = -2773.198141 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.94282 -39.15695 -37.04580 -34.40681 -34.09466 -31.43270 -30.82392 -29.16983 -27.35723 -25.78350 -22.89439 -21.92528 -21.77205 -21.40598 -18.77067 -18.14076 -17.37773 -17.00836 -16.68759 -15.89156 -15.70857 -15.25414 -14.91981 -14.61469 -14.54979 -14.03039 -13.59465 -13.44707 -13.23207 -12.94783 -12.81229 -12.69442 -12.31118 -12.19832 -12.02680 -12.01658 -11.43478 -11.09058 -10.88807 -10.58236 -10.23663 -9.41880 -9.05772 -8.15472 -6.29335 1.09403 1.41374 1.43103 1.50797 1.68149 2.04849 2.40277 3.12573 3.20304 3.55627 3.81466 4.00557 4.09316 4.15205 4.19208 4.36477 4.48396 4.69021 4.80063 4.83613 4.96245 5.05695 5.07847 5.20253 5.21754 5.45811 5.64855 5.83503 5.84979 6.20840 6.22127 6.45352 6.74808 6.82627 6.89727 6.97986 7.41196 8.89764 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.055914 B = 0.004267 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.645945 B = 6560.419576 C = 6890.186712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.215 3.785 3 H -0.026 1.026 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.273 1.273 12 N -0.687 5.687 13 C 0.035 3.965 14 C 0.117 3.883 15 H 0.086 0.914 16 O -0.557 6.557 17 C 0.103 3.897 18 N -0.377 5.377 19 C 0.045 3.955 20 C -0.287 4.287 21 C 0.020 3.980 22 N -0.317 5.317 23 H 0.027 0.973 24 H 0.024 0.976 25 H 0.057 0.943 26 H 0.263 0.737 27 H 0.335 0.665 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.378 0.622 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.206 0.794 34 H 0.167 0.833 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.290 0.994 -18.528 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H -0.009 1.009 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.199 1.199 12 N -0.319 5.319 13 C -0.095 4.095 14 C 0.056 3.944 15 H 0.104 0.896 16 O -0.362 6.362 17 C -0.018 4.018 18 N -0.160 5.160 19 C -0.101 4.101 20 C -0.317 4.317 21 C -0.166 4.166 22 N -0.138 5.138 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.153 0.847 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.226 0.774 31 H 0.114 0.886 32 H 0.153 0.847 33 H 0.223 0.777 34 H 0.185 0.815 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.864 0.452 -17.433 17.539 hybrid contribution 0.724 0.680 0.596 1.159 sum 2.588 1.132 -16.837 17.072 Atomic orbital electron populations 1.21551 0.97616 0.98757 0.99307 1.18927 0.92801 0.90838 0.86725 1.00850 1.21569 1.31837 1.12731 0.91892 0.92754 1.25690 0.95117 0.95667 1.01902 1.70001 1.37283 1.23943 1.24283 0.85576 0.78751 0.78645 0.78442 1.19639 1.20666 1.19876 1.60535 1.32832 1.33091 1.05408 1.22564 1.01161 0.94095 0.91714 1.22014 0.85125 0.95990 0.91256 0.89628 1.86665 1.19460 1.38192 1.91929 1.22561 1.04108 0.93194 0.81975 1.48794 1.18095 1.37461 1.11610 1.23253 0.99828 1.00946 0.86043 1.21856 0.98855 1.07668 1.03294 1.24434 0.99910 1.00607 0.91653 1.77506 1.05782 1.10611 1.19937 0.95372 0.95694 0.92421 0.92751 0.84718 0.95260 0.90156 0.77369 0.88553 0.84661 0.77718 0.81525 0.78525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.62 9.19 71.98 0.66 -4.96 16 2 C 0.22 10.93 2.60 44.17 0.11 11.04 16 3 H -0.03 -1.43 7.80 -2.39 -0.02 -1.45 16 4 C -0.54 -30.19 8.59 25.60 0.22 -29.97 16 5 H 0.05 3.01 7.62 -2.91 -0.02 2.99 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -52.50 11.32 21.45 0.24 -52.26 16 8 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 N -0.69 -29.06 6.30 -495.47 -3.12 -32.18 16 13 C 0.04 1.12 5.19 86.30 0.45 1.57 16 14 C 0.12 3.18 3.45 30.59 0.11 3.28 16 15 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 16 O -0.56 -17.17 11.71 -148.98 -1.74 -18.91 16 17 C 0.10 2.06 6.18 86.38 0.53 2.59 16 18 N -0.38 -8.83 3.68 -348.07 -1.28 -10.11 16 19 C 0.04 0.82 11.45 83.54 0.96 1.78 16 20 C -0.29 -5.41 10.80 21.99 0.24 -5.18 16 21 C 0.02 0.45 12.03 85.24 1.03 1.48 16 22 N -0.32 -8.96 11.56 -57.02 -0.66 -9.62 16 23 H 0.03 1.19 7.45 -2.39 -0.02 1.18 16 24 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 26 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.33 14.57 7.61 -89.69 -0.68 13.88 16 28 H 0.03 0.91 8.06 -2.38 -0.02 0.89 16 29 H 0.08 2.43 7.44 -2.38 -0.02 2.41 16 30 H 0.38 9.54 9.05 -74.06 -0.67 8.87 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.14 1.82 8.07 -2.39 -0.02 1.80 16 33 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.20 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -68.63 296.29 -0.05 -68.68 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: -0.26 Total: 25.62 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.75 Total: -17.03 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -4.82 Total: -104.17 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -1.74 Total: -18.91 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.63 -0.05 -68.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861943.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.851 kcal (2) G-P(sol) polarization free energy of solvation -68.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds