Wall clock time and date at job start Sun Mar 29 2020 22:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47626 * 2 1 4 4 C 1.50696 * 109.47258 * 180.02562 * 3 2 1 5 5 N 1.29949 * 126.28960 * 270.02309 * 4 3 2 6 6 O 1.21297 * 110.25245 * 179.68578 * 5 4 3 7 7 C 1.33641 * 109.81156 * 0.46565 * 6 5 4 8 8 C 1.50696 * 126.55295 * 179.79992 * 7 6 5 9 9 N 1.46899 * 109.47473 * 269.69069 * 8 7 6 10 10 C 1.46896 * 111.00228 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47078 * 35.00260 * 10 9 8 12 12 C 1.53003 * 109.47112 * 274.99952 * 10 9 8 13 13 C 1.50703 * 109.47173 * 155.00072 * 10 9 8 14 14 H 1.08006 * 119.99817 * 35.00135 * 13 10 9 15 15 C 1.37879 * 120.00142 * 215.00605 * 13 10 9 16 16 N 1.31514 * 120.00065 * 184.91318 * 15 13 10 17 17 Si 1.86799 * 120.00086 * 4.90769 * 15 13 10 18 18 H 1.48496 * 109.46932 * 84.83083 * 17 15 13 19 19 H 1.48491 * 109.47212 * 204.83377 * 17 15 13 20 20 H 1.48507 * 109.46996 * 324.83552 * 17 15 13 21 21 N 1.31138 * 106.89862 * 359.54277 * 7 6 5 22 22 H 1.08995 * 109.47086 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46387 * 300.00148 * 1 2 3 24 24 H 1.08996 * 109.46689 * 60.00086 * 1 2 3 25 25 H 1.08999 * 109.47077 * 239.99613 * 2 1 3 26 26 H 1.09005 * 109.47275 * 119.99961 * 2 1 3 27 27 H 1.08999 * 109.47208 * 59.99693 * 3 2 1 28 28 H 1.09005 * 109.46762 * 300.00275 * 3 2 1 29 29 H 1.09005 * 109.47185 * 149.69149 * 8 7 6 30 30 H 1.09004 * 109.46925 * 29.68808 * 8 7 6 31 31 H 1.00900 * 111.00401 * 303.95548 * 9 8 7 32 32 H 1.08992 * 109.47211 * 295.04795 * 12 10 9 33 33 H 1.09004 * 109.46494 * 175.05195 * 12 10 9 34 34 H 1.08995 * 109.46837 * 55.05992 * 12 10 9 35 35 H 0.96999 * 120.00472 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5471 1.4423 -0.0006 5 7 4.3167 1.4417 1.0465 6 8 5.4823 1.4356 0.7109 7 6 5.5697 1.4418 -0.6226 8 6 6.8364 1.4417 -1.4390 9 7 7.2485 2.8266 -1.7038 10 6 8.4832 2.8656 -2.4988 11 1 8.4881 2.0340 -3.2034 12 6 9.6926 2.7531 -1.5684 13 6 8.5518 4.1664 -3.2566 14 1 8.1639 5.0713 -2.8124 15 6 9.1097 4.2014 -4.5170 16 7 9.2577 5.3507 -5.1389 17 14 9.6553 2.6164 -5.3413 18 1 8.4954 1.9885 -6.0233 19 1 10.7135 2.9162 -6.3390 20 1 10.1909 1.6845 -4.3165 21 7 4.3426 1.4424 -1.0851 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 6.6595 0.9282 -2.3841 30 1 7.6238 0.9274 -0.8879 31 1 6.5099 3.3434 -2.1570 32 1 9.7369 3.6298 -0.9224 33 1 10.6041 2.6936 -2.1631 34 1 9.5984 1.8556 -0.9572 35 1 9.6505 5.3755 -6.0255 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602862707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:00 Heat of formation + Delta-G solvation = 51.448743 kcal Electronic energy + Delta-G solvation = -16638.266879 eV Core-core repulsion = 13867.162174 eV Total energy + Delta-G solvation = -2771.104706 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.38786 -36.65254 -36.46028 -34.50482 -32.99693 -31.88156 -29.65086 -27.99171 -26.00023 -24.96617 -23.44767 -22.18348 -20.88567 -19.88840 -17.84670 -17.53153 -16.93950 -15.64769 -15.17765 -14.79263 -14.48835 -14.11081 -13.87030 -13.68802 -12.75679 -12.61675 -12.47397 -12.19784 -11.98862 -11.87913 -11.75143 -11.20992 -11.13276 -11.07476 -10.93757 -10.80032 -10.73206 -10.51169 -9.91386 -9.71041 -9.14142 -8.69226 -7.74718 -6.19520 -4.21905 1.30280 2.34555 3.01700 3.19893 3.28741 3.29450 3.69755 4.12629 4.30057 4.72996 4.74340 4.90285 4.95916 5.19812 5.24228 5.34771 5.41473 5.51053 5.56543 5.65320 5.75285 5.88730 5.96176 6.00588 6.14006 6.26729 6.54173 6.67733 6.75096 7.28608 7.49139 7.68536 8.12608 8.33660 8.49542 8.89310 9.42471 10.93154 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036601 B = 0.004700 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.827677 B = 5956.211832 C = 6247.013986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.027 4.027 4 C 0.167 3.833 5 N -0.392 5.392 6 O 0.080 5.920 7 C 0.206 3.794 8 C 0.142 3.858 9 N -0.678 5.678 10 C 0.183 3.817 11 H 0.010 0.990 12 C -0.128 4.128 13 C -0.522 4.522 14 H 0.081 0.919 15 C 0.076 3.924 16 N -0.892 5.892 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.264 1.264 21 N -0.485 5.485 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.350 0.650 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.023 0.977 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.455 -11.169 8.279 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.066 4.066 4 C -0.106 4.106 5 N -0.101 5.101 6 O 0.023 5.977 7 C -0.014 4.014 8 C 0.011 3.989 9 N -0.313 5.313 10 C 0.075 3.925 11 H 0.028 0.972 12 C -0.186 4.186 13 C -0.561 4.561 14 H 0.099 0.901 15 C -0.128 4.128 16 N -0.529 5.529 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.188 1.188 21 N -0.220 5.220 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.169 0.831 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.668 -10.999 9.213 18.493 hybrid contribution 0.201 -0.928 -1.472 1.752 sum -11.467 -11.928 7.741 18.267 Atomic orbital electron populations 1.21747 0.94806 1.02031 1.02157 1.21485 0.96336 0.95101 1.02788 1.19989 0.83069 0.98953 1.04595 1.25799 1.00115 1.00899 0.83825 1.74589 0.89607 1.21704 1.24158 1.85285 1.21989 1.65316 1.25097 1.29022 0.96854 0.93696 0.81865 1.20563 0.87052 0.95585 0.95737 1.60870 1.08604 1.07517 1.54297 1.19622 0.85613 0.97084 0.90136 0.97235 1.21877 0.98365 0.99307 0.99093 1.21011 1.40803 0.93965 1.00308 0.90077 1.25031 0.94827 0.96052 0.96883 1.69890 1.43846 1.24768 1.14349 0.86896 0.78938 0.84329 0.79640 1.20147 1.21247 1.18825 1.71929 0.99839 1.20894 1.29325 0.92359 0.92483 0.92273 0.91302 0.91749 0.89274 0.88652 0.91056 0.87954 0.83114 0.92680 0.93652 0.95815 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 3 C -0.03 -0.30 5.84 -27.89 -0.16 -0.46 16 4 C 0.17 2.50 7.47 -156.37 -1.17 1.33 16 5 N -0.39 -6.33 12.16 30.90 0.38 -5.95 16 6 O 0.08 1.32 11.31 18.11 0.20 1.52 16 7 C 0.21 3.34 8.03 -13.06 -0.10 3.23 16 8 C 0.14 2.25 6.11 -4.98 -0.03 2.22 16 9 N -0.68 -13.24 6.29 -109.22 -0.69 -13.93 16 10 C 0.18 4.04 2.26 -68.86 -0.16 3.88 16 11 H 0.01 0.22 4.95 -51.93 -0.26 -0.04 16 12 C -0.13 -2.60 9.42 37.16 0.35 -2.25 16 13 C -0.52 -13.97 8.84 -34.44 -0.30 -14.28 16 14 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 15 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 17 Si 0.87 20.44 26.99 -169.99 -4.59 15.85 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.26 -5.82 6.82 56.52 0.39 -5.44 16 21 N -0.49 -8.01 11.55 -9.87 -0.11 -8.13 16 22 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.09 8.06 -51.93 -0.42 0.68 16 30 H 0.10 1.43 7.36 -51.93 -0.38 1.05 16 31 H 0.35 7.16 8.34 -39.29 -0.33 6.84 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.40 7.35 -51.93 -0.38 0.02 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 298.26 15.07 4.49 4.49 Total: -1.00 -29.40 298.26 -6.15 -35.55 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.15 Total: 2.42 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.46 Total: -6.31 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.35 Total: -53.52 kcal Atomic # 8 Polarization: 1.32 SS G_CDS: 0.20 Total: 1.52 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.59 Total: 15.85 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.40 -6.15 -35.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.003 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds