Wall clock time and date at job start Sun Mar 29 2020 22:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47626 * 2 1 4 4 C 1.50696 * 109.47258 * 180.02562 * 3 2 1 5 5 N 1.29949 * 126.28960 * 270.02309 * 4 3 2 6 6 O 1.21297 * 110.25245 * 179.68578 * 5 4 3 7 7 C 1.33641 * 109.81156 * 0.46565 * 6 5 4 8 8 C 1.50696 * 126.55295 * 179.79992 * 7 6 5 9 9 N 1.46899 * 109.47473 * 269.69069 * 8 7 6 10 10 C 1.46896 * 111.00228 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47078 * 35.00260 * 10 9 8 12 12 C 1.53003 * 109.47112 * 274.99952 * 10 9 8 13 13 C 1.50703 * 109.47173 * 155.00072 * 10 9 8 14 14 H 1.08006 * 119.99817 * 35.00135 * 13 10 9 15 15 C 1.37879 * 120.00142 * 215.00605 * 13 10 9 16 16 N 1.31514 * 120.00065 * 184.91318 * 15 13 10 17 17 Si 1.86799 * 120.00086 * 4.90769 * 15 13 10 18 18 H 1.48496 * 109.46932 * 84.83083 * 17 15 13 19 19 H 1.48491 * 109.47212 * 204.83377 * 17 15 13 20 20 H 1.48507 * 109.46996 * 324.83552 * 17 15 13 21 21 N 1.31138 * 106.89862 * 359.54277 * 7 6 5 22 22 H 1.08995 * 109.47086 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46387 * 300.00148 * 1 2 3 24 24 H 1.08996 * 109.46689 * 60.00086 * 1 2 3 25 25 H 1.08999 * 109.47077 * 239.99613 * 2 1 3 26 26 H 1.09005 * 109.47275 * 119.99961 * 2 1 3 27 27 H 1.08999 * 109.47208 * 59.99693 * 3 2 1 28 28 H 1.09005 * 109.46762 * 300.00275 * 3 2 1 29 29 H 1.09005 * 109.47185 * 149.69149 * 8 7 6 30 30 H 1.09004 * 109.46925 * 29.68808 * 8 7 6 31 31 H 1.00900 * 111.00401 * 303.95548 * 9 8 7 32 32 H 1.08992 * 109.47211 * 295.04795 * 12 10 9 33 33 H 1.09004 * 109.46494 * 175.05195 * 12 10 9 34 34 H 1.08995 * 109.46837 * 55.05992 * 12 10 9 35 35 H 0.96999 * 120.00472 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5471 1.4423 -0.0006 5 7 4.3167 1.4417 1.0465 6 8 5.4823 1.4356 0.7109 7 6 5.5697 1.4418 -0.6226 8 6 6.8364 1.4417 -1.4390 9 7 7.2485 2.8266 -1.7038 10 6 8.4832 2.8656 -2.4988 11 1 8.4881 2.0340 -3.2034 12 6 9.6926 2.7531 -1.5684 13 6 8.5518 4.1664 -3.2566 14 1 8.1639 5.0713 -2.8124 15 6 9.1097 4.2014 -4.5170 16 7 9.2577 5.3507 -5.1389 17 14 9.6553 2.6164 -5.3413 18 1 8.4954 1.9885 -6.0233 19 1 10.7135 2.9162 -6.3390 20 1 10.1909 1.6845 -4.3165 21 7 4.3426 1.4424 -1.0851 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 6.6595 0.9282 -2.3841 30 1 7.6238 0.9274 -0.8879 31 1 6.5099 3.3434 -2.1570 32 1 9.7369 3.6298 -0.9224 33 1 10.6041 2.6936 -2.1631 34 1 9.5984 1.8556 -0.9572 35 1 9.6505 5.3755 -6.0255 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602862707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:00 Heat of formation + Delta-G solvation = 29.688632 kcal Electronic energy + Delta-G solvation = -16639.210469 eV Core-core repulsion = 13867.162174 eV Total energy + Delta-G solvation = -2772.048295 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.61387 -38.17224 -37.56717 -35.63166 -34.62127 -33.42530 -31.21062 -28.84527 -27.56329 -26.76551 -24.59659 -23.14118 -21.94394 -21.62669 -19.30262 -19.05839 -18.41602 -17.15107 -16.27439 -15.89496 -15.77949 -15.65274 -15.41379 -14.55251 -14.48935 -14.16973 -13.60029 -13.46918 -13.03869 -12.94424 -12.84336 -12.69218 -12.58341 -12.52398 -12.26100 -12.13256 -12.01400 -11.78799 -11.68008 -11.11007 -10.92990 -10.75386 -9.30009 -8.30011 -6.37592 0.05458 1.14693 1.37949 1.39267 1.49772 1.77245 2.34553 2.59971 2.98921 3.05803 3.54209 3.84925 3.99483 4.05014 4.20628 4.32327 4.48218 4.54629 4.61774 4.70570 4.79024 4.87356 4.91426 4.94075 4.98401 5.13338 5.15434 5.20578 5.37640 5.50518 5.73349 5.91822 6.37163 6.56757 6.75619 7.10928 7.31455 8.86639 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036601 B = 0.004700 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.827677 B = 5956.211832 C = 6247.013986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.029 4.029 4 C 0.168 3.832 5 N -0.406 5.406 6 O 0.072 5.928 7 C 0.206 3.794 8 C 0.145 3.855 9 N -0.684 5.684 10 C 0.187 3.813 11 H 0.020 0.980 12 C -0.126 4.126 13 C -0.526 4.526 14 H 0.033 0.967 15 C 0.016 3.984 16 N -0.945 5.945 17 Si 0.942 3.058 18 H -0.267 1.267 19 H -0.289 1.289 20 H -0.235 1.235 21 N -0.502 5.502 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.340 0.660 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.969 -13.703 8.728 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.068 4.068 4 C -0.105 4.105 5 N -0.117 5.117 6 O 0.018 5.982 7 C -0.015 4.015 8 C 0.014 3.986 9 N -0.318 5.318 10 C 0.079 3.921 11 H 0.037 0.963 12 C -0.184 4.184 13 C -0.565 4.565 14 H 0.052 0.948 15 C -0.183 4.183 16 N -0.585 5.585 17 Si 0.765 3.235 18 H -0.193 1.193 19 H -0.215 1.215 20 H -0.158 1.158 21 N -0.237 5.237 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.176 -13.552 9.698 20.639 hybrid contribution 0.266 -0.067 -1.534 1.558 sum -11.910 -13.619 8.164 19.849 Atomic orbital electron populations 1.21724 0.92915 1.02840 1.02828 1.21442 0.97865 0.93728 1.02088 1.20247 0.80599 1.00307 1.05638 1.26498 1.01600 0.99359 0.83066 1.74586 0.89666 1.22715 1.24687 1.85265 1.22264 1.65596 1.25116 1.29029 0.96940 0.93612 0.81927 1.20652 0.87787 0.93456 0.96670 1.60722 1.07687 1.09988 1.53374 1.19489 0.87397 0.94570 0.90602 0.96256 1.21803 0.97155 1.00523 0.98916 1.21252 1.39840 0.94634 1.00742 0.94841 1.25949 0.95036 0.99679 0.97623 1.70054 1.45807 1.27601 1.14994 0.85821 0.78641 0.80101 0.78933 1.19264 1.21513 1.15826 1.71950 1.00288 1.21341 1.30124 0.91511 0.91642 0.91793 0.92215 0.92237 0.87903 0.87889 0.89812 0.85332 0.84190 0.94056 0.93899 0.92093 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 71.98 0.71 -1.04 16 2 C -0.11 -1.91 5.92 30.60 0.18 -1.73 16 3 C -0.03 -0.59 5.84 29.85 0.17 -0.41 16 4 C 0.17 4.81 7.47 138.46 1.03 5.85 16 5 N -0.41 -12.64 12.16 -60.33 -0.73 -13.37 16 6 O 0.07 2.28 11.31 74.86 0.85 3.12 16 7 C 0.21 6.33 8.03 88.38 0.71 7.04 16 8 C 0.14 4.23 6.11 85.56 0.52 4.75 16 9 N -0.68 -25.88 6.29 -499.46 -3.14 -29.02 16 10 C 0.19 7.98 2.26 44.17 0.10 8.08 16 11 H 0.02 0.80 4.95 -2.39 -0.01 0.79 16 12 C -0.13 -4.81 9.42 71.98 0.68 -4.13 16 13 C -0.53 -28.61 8.84 25.60 0.23 -28.39 16 14 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 15 C 0.02 0.87 5.47 84.66 0.46 1.33 16 16 N -0.95 -57.38 13.96 21.45 0.30 -57.08 16 17 Si 0.94 41.25 26.99 68.60 1.85 43.10 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.24 -9.17 6.82 99.48 0.68 -8.49 16 21 N -0.50 -15.92 11.55 -303.20 -3.50 -19.42 16 22 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.08 2.30 8.06 -2.38 -0.02 2.28 16 30 H 0.13 3.08 7.36 -2.38 -0.02 3.07 16 31 H 0.34 13.95 8.34 -89.69 -0.75 13.20 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.87 7.35 -2.39 -0.02 1.85 16 35 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -64.38 298.26 0.73 -63.65 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.31 Total: 17.69 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 4.80 Total: -8.67 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -7.08 Total: -118.90 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.85 Total: 3.12 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.85 Total: 43.10 kcal Total: -64.38 0.73 -63.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.337 kcal (2) G-P(sol) polarization free energy of solvation -64.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds