Wall clock time and date at job start Sun Mar 29 2020 22:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 C 1.50702 * 109.47052 * 119.99470 * 2 1 3 5 5 N 1.29946 * 126.28659 * 299.97960 * 4 2 1 6 6 O 1.21297 * 110.25167 * 179.97438 * 5 4 2 7 7 C 1.33643 * 109.81140 * 359.97438 * 6 5 4 8 8 C 1.50696 * 126.55460 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47473 * 270.02747 * 8 7 6 10 10 C 1.46896 * 111.00228 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47078 * 35.00260 * 10 9 8 12 12 C 1.53003 * 109.47112 * 274.99952 * 10 9 8 13 13 C 1.50703 * 109.47173 * 155.00072 * 10 9 8 14 14 H 1.08006 * 119.99817 * 35.00135 * 13 10 9 15 15 C 1.37879 * 120.00142 * 215.00605 * 13 10 9 16 16 N 1.31514 * 120.00065 * 184.91318 * 15 13 10 17 17 Si 1.86799 * 120.00086 * 4.90769 * 15 13 10 18 18 H 1.48496 * 109.46932 * 84.83083 * 17 15 13 19 19 H 1.48491 * 109.47212 * 204.83377 * 17 15 13 20 20 H 1.48507 * 109.46996 * 324.83552 * 17 15 13 21 21 N 1.31134 * 106.89541 * 0.22987 * 7 6 5 22 22 H 1.09010 * 109.47057 * 300.00553 * 1 2 3 23 23 H 1.09008 * 109.47012 * 60.00189 * 1 2 3 24 24 H 1.08994 * 109.47356 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47179 * 239.99518 * 2 1 3 26 26 H 1.08999 * 109.47048 * 299.99550 * 3 2 1 27 27 H 1.08996 * 109.47499 * 59.99714 * 3 2 1 28 28 H 1.09006 * 109.47099 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47185 * 150.02826 * 8 7 6 30 30 H 1.09004 * 109.46925 * 30.02486 * 8 7 6 31 31 H 1.00900 * 111.00401 * 303.95548 * 9 8 7 32 32 H 1.08992 * 109.47211 * 295.04795 * 12 10 9 33 33 H 1.09004 * 109.46494 * 175.05195 * 12 10 9 34 34 H 1.08995 * 109.46837 * 55.05992 * 12 10 9 35 35 H 0.96999 * 120.00472 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7952 -0.3742 2.4632 6 8 2.3412 -1.1474 3.2217 7 6 2.9980 -2.0788 2.5237 8 6 3.8044 -3.2203 3.0873 9 7 5.1978 -2.7923 3.2699 10 6 6.0154 -3.8819 3.8197 11 1 5.6694 -4.8342 3.4179 12 6 5.8887 -3.8953 5.3444 13 6 7.4577 -3.6697 3.4374 14 1 7.8584 -2.6687 3.3760 15 6 8.2655 -4.7536 3.1658 16 7 9.5464 -4.5755 2.9269 17 14 7.5406 -6.4749 3.1373 18 1 6.9620 -6.7462 1.7969 19 1 8.6078 -7.4663 3.4257 20 1 6.4755 -6.5806 4.1668 21 7 2.8112 -1.8064 1.2547 22 1 -0.3634 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1301 1.4425 -0.0005 29 1 3.7709 -4.0640 2.3980 30 1 3.3874 -3.5198 4.0489 31 1 5.5870 -2.4489 2.4047 32 1 6.3156 -2.9792 5.7525 33 1 6.4239 -4.7559 5.7458 34 1 4.8364 -3.9606 5.6209 35 1 10.1149 -5.3380 2.7362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:37 Heat of formation + Delta-G solvation = 54.121769 kcal Electronic energy + Delta-G solvation = -16850.745775 eV Core-core repulsion = 14079.756980 eV Total energy + Delta-G solvation = -2770.988795 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.38100 -36.84672 -36.58409 -34.49270 -32.78098 -31.62166 -29.55192 -27.42447 -25.99798 -24.97328 -24.50066 -22.72397 -20.06267 -19.88636 -17.83559 -17.58711 -16.99228 -15.47845 -15.13544 -14.73662 -14.29529 -14.10496 -13.83082 -13.59717 -12.73736 -12.58662 -12.47186 -12.15367 -12.06676 -11.76322 -11.70161 -11.25050 -11.20656 -11.13098 -10.96860 -10.78364 -10.73094 -10.51534 -9.91137 -9.70083 -9.13898 -8.69003 -7.74390 -6.19331 -4.21672 1.31721 2.36758 3.02794 3.20058 3.28915 3.29597 3.64722 4.14068 4.30257 4.73147 4.84349 4.87596 4.98020 5.24304 5.26690 5.37341 5.45960 5.56702 5.62729 5.65621 5.71781 5.94008 5.96650 6.01673 6.19085 6.27060 6.54362 6.67930 6.75278 7.28780 7.49311 7.68818 8.12876 8.35148 8.49761 8.89481 9.42712 10.93358 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.038666 B = 0.004961 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.979394 B = 5642.267015 C = 5807.782027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.003 4.003 3 C -0.145 4.145 4 C 0.171 3.829 5 N -0.388 5.388 6 O 0.080 5.920 7 C 0.205 3.795 8 C 0.142 3.858 9 N -0.678 5.678 10 C 0.182 3.818 11 H 0.010 0.990 12 C -0.128 4.128 13 C -0.522 4.522 14 H 0.081 0.919 15 C 0.076 3.924 16 N -0.892 5.892 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.264 1.264 21 N -0.486 5.486 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.349 0.651 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.023 0.977 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.211 5.286 -3.848 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 C -0.203 4.203 4 C -0.103 4.103 5 N -0.097 5.097 6 O 0.023 5.977 7 C -0.015 4.015 8 C 0.011 3.989 9 N -0.313 5.313 10 C 0.075 3.925 11 H 0.028 0.972 12 C -0.186 4.186 13 C -0.561 4.561 14 H 0.099 0.901 15 C -0.128 4.128 16 N -0.529 5.529 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.188 1.188 21 N -0.221 5.221 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.169 0.831 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.582 6.100 -3.478 18.007 hybrid contribution 0.009 -1.664 -0.704 1.807 sum -16.573 4.435 -4.182 17.658 Atomic orbital electron populations 1.21838 0.93126 1.02425 1.02769 1.19517 0.96160 0.95417 0.91209 1.21844 1.01761 0.93977 1.02712 1.25757 0.96851 0.93086 0.94557 1.74531 1.18283 1.14055 1.02801 1.85292 1.47744 1.29506 1.35153 1.29008 0.93563 0.93472 0.85501 1.20559 0.90188 0.87491 1.00684 1.60870 0.98259 1.38121 1.34028 1.19626 0.93030 0.87566 0.92266 0.97232 1.21875 0.97755 1.01189 0.97800 1.21007 0.92127 0.95667 1.47250 0.90087 1.25027 0.94705 0.98905 0.94126 1.69890 1.04437 1.31399 1.47138 0.86898 0.79217 0.84671 0.79028 1.20153 1.21249 1.18832 1.71934 1.17192 1.14553 1.18385 0.91922 0.91225 0.92392 0.88168 0.91246 0.91911 0.92080 0.91079 0.87966 0.83126 0.92689 0.93658 0.95821 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.18 37.16 0.34 -0.99 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.14 -1.45 9.18 37.16 0.34 -1.11 16 4 C 0.17 2.57 6.72 -156.38 -1.05 1.52 16 5 N -0.39 -6.22 12.16 30.90 0.38 -5.85 16 6 O 0.08 1.32 11.31 18.10 0.20 1.52 16 7 C 0.21 3.34 8.03 -13.06 -0.10 3.23 16 8 C 0.14 2.27 6.11 -4.98 -0.03 2.24 16 9 N -0.68 -13.27 6.29 -109.22 -0.69 -13.95 16 10 C 0.18 4.03 2.26 -68.86 -0.16 3.88 16 11 H 0.01 0.22 4.95 -51.93 -0.26 -0.04 16 12 C -0.13 -2.60 9.42 37.16 0.35 -2.25 16 13 C -0.52 -13.96 8.84 -34.44 -0.30 -14.27 16 14 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 15 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 17 Si 0.87 20.46 26.99 -169.99 -4.59 15.87 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.26 -5.83 6.82 56.52 0.39 -5.45 16 21 N -0.49 -8.11 11.55 -9.87 -0.11 -8.23 16 22 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 23 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 30 H 0.10 1.43 7.36 -51.93 -0.38 1.05 16 31 H 0.35 7.19 8.34 -39.29 -0.33 6.86 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.40 7.35 -51.93 -0.38 0.02 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 297.59 15.07 4.48 4.48 Total: -1.00 -29.38 297.59 -5.72 -35.10 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.15 Total: 2.69 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.02 Total: -6.10 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.35 Total: -53.56 kcal Atomic # 8 Polarization: 1.32 SS G_CDS: 0.20 Total: 1.52 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.59 Total: 15.87 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.38 -5.72 -35.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.221 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds