Wall clock time and date at job start Sun Mar 29 2020 22:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 C 1.50702 * 109.47052 * 119.99470 * 2 1 3 5 5 N 1.29946 * 126.28659 * 299.97960 * 4 2 1 6 6 O 1.21297 * 110.25167 * 179.97438 * 5 4 2 7 7 C 1.33643 * 109.81140 * 359.97438 * 6 5 4 8 8 C 1.50696 * 126.55460 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47473 * 270.02747 * 8 7 6 10 10 C 1.46896 * 111.00228 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47078 * 35.00260 * 10 9 8 12 12 C 1.53003 * 109.47112 * 274.99952 * 10 9 8 13 13 C 1.50703 * 109.47173 * 155.00072 * 10 9 8 14 14 H 1.08006 * 119.99817 * 35.00135 * 13 10 9 15 15 C 1.37879 * 120.00142 * 215.00605 * 13 10 9 16 16 N 1.31514 * 120.00065 * 184.91318 * 15 13 10 17 17 Si 1.86799 * 120.00086 * 4.90769 * 15 13 10 18 18 H 1.48496 * 109.46932 * 84.83083 * 17 15 13 19 19 H 1.48491 * 109.47212 * 204.83377 * 17 15 13 20 20 H 1.48507 * 109.46996 * 324.83552 * 17 15 13 21 21 N 1.31134 * 106.89541 * 0.22987 * 7 6 5 22 22 H 1.09010 * 109.47057 * 300.00553 * 1 2 3 23 23 H 1.09008 * 109.47012 * 60.00189 * 1 2 3 24 24 H 1.08994 * 109.47356 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47179 * 239.99518 * 2 1 3 26 26 H 1.08999 * 109.47048 * 299.99550 * 3 2 1 27 27 H 1.08996 * 109.47499 * 59.99714 * 3 2 1 28 28 H 1.09006 * 109.47099 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47185 * 150.02826 * 8 7 6 30 30 H 1.09004 * 109.46925 * 30.02486 * 8 7 6 31 31 H 1.00900 * 111.00401 * 303.95548 * 9 8 7 32 32 H 1.08992 * 109.47211 * 295.04795 * 12 10 9 33 33 H 1.09004 * 109.46494 * 175.05195 * 12 10 9 34 34 H 1.08995 * 109.46837 * 55.05992 * 12 10 9 35 35 H 0.96999 * 120.00472 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7952 -0.3742 2.4632 6 8 2.3412 -1.1474 3.2217 7 6 2.9980 -2.0788 2.5237 8 6 3.8044 -3.2203 3.0873 9 7 5.1978 -2.7923 3.2699 10 6 6.0154 -3.8819 3.8197 11 1 5.6694 -4.8342 3.4179 12 6 5.8887 -3.8953 5.3444 13 6 7.4577 -3.6697 3.4374 14 1 7.8584 -2.6687 3.3760 15 6 8.2655 -4.7536 3.1658 16 7 9.5464 -4.5755 2.9269 17 14 7.5406 -6.4749 3.1373 18 1 6.9620 -6.7462 1.7969 19 1 8.6078 -7.4663 3.4257 20 1 6.4755 -6.5806 4.1668 21 7 2.8112 -1.8064 1.2547 22 1 -0.3634 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1301 1.4425 -0.0005 29 1 3.7709 -4.0640 2.3980 30 1 3.3874 -3.5198 4.0489 31 1 5.5870 -2.4489 2.4047 32 1 6.3156 -2.9792 5.7525 33 1 6.4239 -4.7559 5.7458 34 1 4.8364 -3.9606 5.6209 35 1 10.1149 -5.3380 2.7362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:37 Heat of formation + Delta-G solvation = 31.984273 kcal Electronic energy + Delta-G solvation = -16851.705729 eV Core-core repulsion = 14079.756980 eV Total energy + Delta-G solvation = -2771.948748 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.60911 -38.17317 -37.86857 -35.73756 -34.53667 -33.10029 -31.10359 -28.17632 -27.56604 -26.77083 -25.59841 -23.92866 -21.63885 -21.14709 -19.25553 -19.07958 -18.51031 -17.11410 -16.14955 -16.01941 -15.73835 -15.66773 -15.12690 -14.54696 -14.43849 -14.17530 -13.62363 -13.36162 -13.21439 -12.88939 -12.78095 -12.67165 -12.56954 -12.56514 -12.28349 -12.24827 -12.07001 -11.87945 -11.78876 -11.11404 -10.92886 -10.75365 -9.30274 -8.30033 -6.37578 0.06431 1.16408 1.37848 1.39148 1.49636 1.77903 2.34490 2.56132 2.99531 3.06337 3.53381 3.80366 3.97056 4.03138 4.17108 4.34941 4.47213 4.54528 4.68095 4.73359 4.75423 4.82394 4.92318 4.93415 4.98156 5.03176 5.13126 5.21085 5.26726 5.50292 5.73123 5.91675 6.36789 6.56533 6.75454 7.11992 7.31461 8.86645 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.038666 B = 0.004961 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.979394 B = 5642.267015 C = 5807.782027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.008 4.008 3 C -0.140 4.140 4 C 0.171 3.829 5 N -0.400 5.400 6 O 0.072 5.928 7 C 0.204 3.796 8 C 0.145 3.855 9 N -0.684 5.684 10 C 0.187 3.813 11 H 0.020 0.980 12 C -0.125 4.125 13 C -0.526 4.526 14 H 0.033 0.967 15 C 0.016 3.984 16 N -0.945 5.945 17 Si 0.942 3.058 18 H -0.268 1.268 19 H -0.289 1.289 20 H -0.235 1.235 21 N -0.505 5.505 22 H 0.054 0.946 23 H 0.097 0.903 24 H 0.053 0.947 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.340 0.660 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.766 4.401 -4.104 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.103 4.103 5 N -0.110 5.110 6 O 0.017 5.983 7 C -0.016 4.016 8 C 0.015 3.985 9 N -0.318 5.318 10 C 0.079 3.921 11 H 0.037 0.963 12 C -0.183 4.183 13 C -0.564 4.564 14 H 0.051 0.949 15 C -0.182 4.182 16 N -0.585 5.585 17 Si 0.765 3.235 18 H -0.193 1.193 19 H -0.215 1.215 20 H -0.158 1.158 21 N -0.239 5.239 22 H 0.073 0.927 23 H 0.116 0.884 24 H 0.072 0.928 25 H 0.126 0.874 26 H 0.118 0.882 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.167 5.226 -3.706 20.209 hybrid contribution 0.798 -1.247 -0.664 1.622 sum -18.369 3.979 -4.370 19.296 Atomic orbital electron populations 1.21813 0.91370 1.02498 1.03809 1.19816 0.97566 0.95687 0.89742 1.21832 1.00800 0.93383 1.03830 1.26487 0.95808 0.92515 0.95444 1.74526 1.18959 1.14299 1.03231 1.85273 1.47991 1.29625 1.35388 1.29014 0.93607 0.93463 0.85550 1.20648 0.87844 0.87533 1.02519 1.60724 0.99918 1.37428 1.33680 1.19498 0.90438 0.88569 0.93618 0.96250 1.21798 1.00076 1.00430 0.96045 1.21242 0.94892 0.93591 1.46689 0.94868 1.25939 0.94826 1.03677 0.93777 1.70054 1.06299 1.32813 1.49297 0.85824 0.79000 0.78613 0.80075 1.19288 1.21495 1.15844 1.71954 1.17805 1.15444 1.18732 0.92669 0.88382 0.92796 0.87443 0.88238 0.92682 0.93537 0.89853 0.85334 0.84232 0.94071 0.93893 0.92106 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.18 71.98 0.66 -1.56 16 2 C -0.01 -0.17 3.39 -11.54 -0.04 -0.21 16 3 C -0.14 -2.57 9.18 71.98 0.66 -1.91 16 4 C 0.17 4.95 6.72 138.47 0.93 5.88 16 5 N -0.40 -12.44 12.16 -60.33 -0.73 -13.17 16 6 O 0.07 2.28 11.31 74.84 0.85 3.13 16 7 C 0.20 6.35 8.03 88.38 0.71 7.06 16 8 C 0.15 4.27 6.11 85.56 0.52 4.79 16 9 N -0.68 -26.02 6.29 -499.46 -3.14 -29.16 16 10 C 0.19 7.98 2.26 44.17 0.10 8.08 16 11 H 0.02 0.81 4.95 -2.39 -0.01 0.80 16 12 C -0.13 -4.80 9.42 71.98 0.68 -4.13 16 13 C -0.53 -28.63 8.84 25.60 0.23 -28.40 16 14 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 15 C 0.02 0.90 5.47 84.66 0.46 1.37 16 16 N -0.95 -57.43 13.96 21.45 0.30 -57.13 16 17 Si 0.94 41.32 26.99 68.60 1.85 43.17 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.24 -9.20 6.82 99.48 0.68 -8.52 16 21 N -0.50 -16.25 11.55 -303.21 -3.50 -19.75 16 22 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 23 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.11 2.07 8.14 -2.39 -0.02 2.06 16 26 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.08 2.31 8.06 -2.38 -0.02 2.29 16 30 H 0.13 3.11 7.36 -2.38 -0.02 3.09 16 31 H 0.34 14.03 8.34 -89.69 -0.75 13.28 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.87 7.35 -2.39 -0.02 1.86 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -64.76 297.59 0.84 -63.92 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.31 Total: 18.03 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 4.91 Total: -9.03 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -7.08 Total: -119.22 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.85 Total: 3.13 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.85 Total: 43.17 kcal Total: -64.76 0.84 -63.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.908 kcal (2) G-P(sol) polarization free energy of solvation -64.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds