Wall clock time and date at job start Sun Mar 29 2020 22:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47277 * 2 1 4 4 C 1.50698 * 109.47332 * 120.00179 * 2 1 3 5 5 N 1.31131 * 126.55222 * 120.24220 * 4 2 1 6 6 C 1.34497 * 105.61382 * 180.12463 * 5 4 2 7 7 C 1.50703 * 126.28645 * 179.90826 * 6 5 4 8 8 N 1.46899 * 109.47107 * 269.71386 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.46818 * 35.00369 * 9 8 7 11 11 C 1.52993 * 109.47308 * 275.00154 * 9 8 7 12 12 C 1.50695 * 109.46760 * 155.00092 * 9 8 7 13 13 H 1.08002 * 120.00262 * 0.02562 * 12 9 8 14 14 C 1.37881 * 119.99815 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99938 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99914 * 180.02562 * 14 12 9 17 17 H 1.48493 * 109.47346 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.46854 * 120.00026 * 16 14 12 19 19 H 1.48502 * 109.46870 * 239.99430 * 16 14 12 20 20 N 1.29940 * 107.42386 * 359.64803 * 6 5 4 21 21 O 1.21305 * 110.25415 * 0.22454 * 20 6 5 22 22 H 1.08998 * 109.47232 * 59.99591 * 1 2 3 23 23 H 1.08996 * 109.47330 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47078 * 300.00119 * 1 2 3 25 25 H 1.09008 * 109.46733 * 239.99994 * 2 1 3 26 26 H 1.09003 * 109.47113 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47441 * 299.99811 * 3 2 1 28 28 H 1.08994 * 109.47388 * 60.00280 * 3 2 1 29 29 H 1.09002 * 109.47152 * 149.71473 * 7 6 5 30 30 H 1.09001 * 109.46980 * 29.71574 * 7 6 5 31 31 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 32 32 H 1.09004 * 109.47538 * 300.00000 * 11 9 8 33 33 H 1.09001 * 109.46997 * 59.99957 * 11 9 8 34 34 H 1.08999 * 109.47404 * 180.02562 * 11 9 8 35 35 H 0.97001 * 120.00067 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7929 -1.7782 1.2598 6 6 2.9811 -2.0528 2.5629 7 6 3.7884 -3.1938 3.1265 8 7 2.9200 -4.3643 3.3101 9 6 3.6747 -5.4990 3.8587 10 1 4.4335 -5.1308 4.5491 11 6 4.3505 -6.2615 2.7174 12 6 2.7341 -6.4208 4.5911 13 1 1.6809 -6.1874 4.6435 14 6 3.2181 -7.5623 5.1944 15 7 4.5005 -7.8468 5.1302 16 14 2.0521 -8.7053 6.1016 17 1 0.6712 -8.1642 6.0278 18 1 2.0910 -10.0512 5.4751 19 1 2.4673 -8.8091 7.5236 20 7 2.3437 -1.1503 3.2468 21 8 1.7919 -0.3697 2.5001 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8899 29 1 4.2107 -2.9003 4.0875 30 1 4.5944 -3.4441 2.4367 31 1 2.1288 -4.1395 3.8946 32 1 3.5917 -6.6298 2.0269 33 1 5.0308 -5.5947 2.1876 34 1 4.9102 -7.1037 3.1244 35 1 4.8410 -8.6500 5.5542 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:40 Heat of formation + Delta-G solvation = 55.083064 kcal Electronic energy + Delta-G solvation = -16783.388645 eV Core-core repulsion = 14012.441536 eV Total energy + Delta-G solvation = -2770.947110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.38200 -36.58163 -36.38434 -35.00432 -32.63300 -31.27687 -28.93755 -27.54809 -25.83801 -24.93668 -24.23730 -22.77459 -20.17960 -19.82841 -17.86774 -17.32158 -16.47071 -16.00139 -14.97523 -14.67274 -14.25536 -13.72707 -13.63140 -13.59558 -12.61625 -12.56158 -12.42620 -11.99941 -11.89249 -11.71421 -11.38548 -11.31725 -11.20860 -10.93533 -10.77724 -10.73443 -10.34715 -10.16569 -10.10785 -9.66883 -8.86700 -8.51129 -7.42317 -6.05575 -4.12130 1.33488 2.47168 2.90898 3.28109 3.35795 3.40575 3.76564 4.25808 4.40265 4.57783 4.66347 4.82480 5.22592 5.25409 5.26705 5.41417 5.44224 5.48009 5.58616 5.78606 5.85947 5.89728 5.97975 6.10348 6.29412 6.83329 7.10924 7.16628 7.41891 7.74368 7.82861 8.20804 8.27826 8.41527 8.55425 8.96150 9.53769 11.00928 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.046271 B = 0.004471 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.991259 B = 6261.559273 C = 6447.778710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.003 3.997 3 C -0.150 4.150 4 C 0.169 3.831 5 N -0.465 5.465 6 C 0.191 3.809 7 C 0.147 3.853 8 N -0.679 5.679 9 C 0.212 3.788 10 H 0.005 0.995 11 C -0.125 4.125 12 C -0.519 4.519 13 H 0.061 0.939 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.284 1.284 20 N -0.387 5.387 21 O 0.074 5.926 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.114 0.886 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.334 0.666 32 H 0.033 0.967 33 H 0.006 0.994 34 H 0.083 0.917 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 16.424 -9.642 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 C -0.208 4.208 4 C -0.053 4.053 5 N -0.198 5.198 6 C -0.082 4.082 7 C 0.016 3.984 8 N -0.312 5.312 9 C 0.105 3.895 10 H 0.023 0.977 11 C -0.183 4.183 12 C -0.558 4.558 13 H 0.079 0.921 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 N -0.096 5.096 21 O 0.015 5.985 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.132 0.868 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.151 0.849 32 H 0.052 0.948 33 H 0.025 0.975 34 H 0.101 0.899 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.401 15.730 -9.506 18.899 hybrid contribution -0.481 -0.374 1.332 1.465 sum -4.882 15.356 -8.174 18.068 Atomic orbital electron populations 1.21908 0.92326 1.03341 1.03339 1.19780 0.96923 0.95616 0.89451 1.21905 1.01893 0.93619 1.03393 1.28819 0.94826 0.92796 0.88844 1.71926 1.16126 1.12280 1.19490 1.26081 0.98807 0.97874 0.85475 1.20239 0.93738 0.85661 0.98809 1.60778 1.10426 1.04116 1.55896 1.19173 0.92391 0.86307 0.91582 0.97724 1.21724 0.98589 1.00545 0.97474 1.21254 0.94436 1.07174 1.32890 0.92123 1.24911 0.95220 0.97639 0.96160 1.69905 1.12432 1.26234 1.44194 0.86433 0.81043 0.80622 0.79274 1.19749 1.20885 1.21029 1.74654 1.12937 1.04663 1.17322 1.85234 1.54561 1.43174 1.15480 0.90626 0.91640 0.91521 0.86753 0.91883 0.90613 0.91524 0.93241 0.88581 0.84912 0.94784 0.97501 0.89888 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.18 37.16 0.34 -0.75 16 2 C 0.00 0.02 3.39 -91.78 -0.31 -0.29 16 3 C -0.15 -0.98 9.18 37.16 0.34 -0.64 16 4 C 0.17 2.31 7.02 -13.06 -0.09 2.22 16 5 N -0.47 -8.02 11.55 -9.87 -0.11 -8.14 16 6 C 0.19 3.56 7.73 -156.37 -1.21 2.35 16 7 C 0.15 2.91 6.11 -4.98 -0.03 2.88 16 8 N -0.68 -15.47 6.29 -109.22 -0.69 -16.15 16 9 C 0.21 5.50 2.60 -68.87 -0.18 5.32 16 10 H 0.01 0.14 7.80 -51.93 -0.41 -0.26 16 11 C -0.12 -3.17 9.19 37.15 0.34 -2.82 16 12 C -0.52 -14.50 8.59 -34.44 -0.30 -14.80 16 13 H 0.06 1.69 7.62 -52.49 -0.40 1.29 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 16 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 N -0.39 -6.96 12.16 30.90 0.38 -6.58 16 21 O 0.07 1.12 11.31 18.11 0.20 1.32 16 22 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.11 0.92 8.14 -51.92 -0.42 0.50 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.97 8.06 -51.93 -0.42 0.55 16 30 H 0.10 1.87 7.44 -51.93 -0.39 1.49 16 31 H 0.33 7.63 8.22 -39.29 -0.32 7.30 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 34 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 297.86 15.07 4.49 4.49 Total: -1.00 -30.76 297.86 -6.46 -37.22 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.15 Total: 1.12 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.19 Total: -4.88 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.20 Total: -55.74 kcal Atomic # 8 Polarization: 1.12 SS G_CDS: 0.20 Total: 1.32 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.76 -6.46 -37.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.306 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds