Wall clock time and date at job start Sun Mar 29 2020 22:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47277 * 2 1 4 4 C 1.50698 * 109.47332 * 120.00179 * 2 1 3 5 5 N 1.31131 * 126.55222 * 120.24220 * 4 2 1 6 6 C 1.34497 * 105.61382 * 180.12463 * 5 4 2 7 7 C 1.50703 * 126.28645 * 179.90826 * 6 5 4 8 8 N 1.46899 * 109.47107 * 269.71386 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.46818 * 35.00369 * 9 8 7 11 11 C 1.52993 * 109.47308 * 275.00154 * 9 8 7 12 12 C 1.50695 * 109.46760 * 155.00092 * 9 8 7 13 13 H 1.08002 * 120.00262 * 0.02562 * 12 9 8 14 14 C 1.37881 * 119.99815 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99938 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99914 * 180.02562 * 14 12 9 17 17 H 1.48493 * 109.47346 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.46854 * 120.00026 * 16 14 12 19 19 H 1.48502 * 109.46870 * 239.99430 * 16 14 12 20 20 N 1.29940 * 107.42386 * 359.64803 * 6 5 4 21 21 O 1.21305 * 110.25415 * 0.22454 * 20 6 5 22 22 H 1.08998 * 109.47232 * 59.99591 * 1 2 3 23 23 H 1.08996 * 109.47330 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47078 * 300.00119 * 1 2 3 25 25 H 1.09008 * 109.46733 * 239.99994 * 2 1 3 26 26 H 1.09003 * 109.47113 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47441 * 299.99811 * 3 2 1 28 28 H 1.08994 * 109.47388 * 60.00280 * 3 2 1 29 29 H 1.09002 * 109.47152 * 149.71473 * 7 6 5 30 30 H 1.09001 * 109.46980 * 29.71574 * 7 6 5 31 31 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 32 32 H 1.09004 * 109.47538 * 300.00000 * 11 9 8 33 33 H 1.09001 * 109.46997 * 59.99957 * 11 9 8 34 34 H 1.08999 * 109.47404 * 180.02562 * 11 9 8 35 35 H 0.97001 * 120.00067 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7929 -1.7782 1.2598 6 6 2.9811 -2.0528 2.5629 7 6 3.7884 -3.1938 3.1265 8 7 2.9200 -4.3643 3.3101 9 6 3.6747 -5.4990 3.8587 10 1 4.4335 -5.1308 4.5491 11 6 4.3505 -6.2615 2.7174 12 6 2.7341 -6.4208 4.5911 13 1 1.6809 -6.1874 4.6435 14 6 3.2181 -7.5623 5.1944 15 7 4.5005 -7.8468 5.1302 16 14 2.0521 -8.7053 6.1016 17 1 0.6712 -8.1642 6.0278 18 1 2.0910 -10.0512 5.4751 19 1 2.4673 -8.8091 7.5236 20 7 2.3437 -1.1503 3.2468 21 8 1.7919 -0.3697 2.5001 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8899 29 1 4.2107 -2.9003 4.0875 30 1 4.5944 -3.4441 2.4367 31 1 2.1288 -4.1395 3.8946 32 1 3.5917 -6.6298 2.0269 33 1 5.0308 -5.5947 2.1876 34 1 4.9102 -7.1037 3.1244 35 1 4.8410 -8.6500 5.5542 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:40 Heat of formation + Delta-G solvation = 32.833761 kcal Electronic energy + Delta-G solvation = -16784.353447 eV Core-core repulsion = 14012.441536 eV Total energy + Delta-G solvation = -2771.911912 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.69243 -38.28910 -37.28095 -36.46619 -34.53252 -32.63585 -30.79683 -28.07525 -27.70619 -26.88761 -25.31001 -24.04580 -21.92245 -21.20568 -19.18367 -18.87195 -18.22090 -17.02093 -16.86911 -16.06388 -15.65931 -15.50260 -15.01563 -14.34664 -14.24452 -13.98764 -13.52800 -13.25675 -13.04173 -12.86837 -12.83511 -12.72004 -12.59321 -12.33706 -12.25184 -12.20857 -12.14680 -11.99508 -11.87616 -11.03824 -10.91472 -10.62372 -9.30669 -8.18139 -6.32689 0.12924 1.12000 1.39852 1.41425 1.53531 1.85412 2.38238 2.55077 2.94584 3.10725 3.61379 3.79023 3.94002 4.04821 4.22388 4.37494 4.49597 4.66950 4.76437 4.81240 4.87228 4.93960 5.00645 5.03699 5.11360 5.11925 5.34643 5.35620 5.37413 5.59513 5.75979 6.14288 6.27300 6.55843 6.84493 7.15110 7.37313 8.88054 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.046271 B = 0.004471 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.991259 B = 6261.559273 C = 6447.778710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.002 3.998 3 C -0.146 4.146 4 C 0.187 3.813 5 N -0.495 5.495 6 C 0.174 3.826 7 C 0.152 3.848 8 N -0.678 5.678 9 C 0.216 3.784 10 H -0.020 1.020 11 C -0.113 4.113 12 C -0.542 4.542 13 H 0.056 0.944 14 C 0.017 3.983 15 N -0.914 5.914 16 Si 0.965 3.035 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.278 1.278 20 N -0.403 5.403 21 O 0.083 5.917 22 H 0.107 0.893 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.124 0.876 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.331 0.669 32 H 0.027 0.973 33 H 0.025 0.975 34 H 0.062 0.938 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 17.531 -10.604 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 C -0.204 4.204 4 C -0.033 4.033 5 N -0.228 5.228 6 C -0.099 4.099 7 C 0.021 3.979 8 N -0.310 5.310 9 C 0.109 3.891 10 H -0.002 1.002 11 C -0.171 4.171 12 C -0.580 4.580 13 H 0.074 0.926 14 C -0.183 4.183 15 N -0.553 5.553 16 Si 0.790 3.210 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.204 1.204 20 N -0.111 5.111 21 O 0.023 5.977 22 H 0.125 0.875 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.142 0.858 26 H 0.074 0.926 27 H 0.124 0.876 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.148 0.852 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.632 16.846 -10.482 20.624 hybrid contribution -0.112 -0.603 1.556 1.673 sum -5.744 16.242 -8.925 19.403 Atomic orbital electron populations 1.21936 0.90828 1.02869 1.04987 1.20214 0.97987 0.96523 0.87112 1.21927 1.01450 0.92029 1.04970 1.29885 0.92563 0.91477 0.89386 1.71900 1.17956 1.14115 1.18794 1.25792 0.99724 0.98093 0.86303 1.20095 0.93554 0.85222 0.98983 1.60674 1.10482 1.04708 1.55145 1.18998 0.91790 0.87135 0.91215 1.00225 1.21549 0.98401 1.00092 0.97108 1.21528 0.94556 1.08108 1.33817 0.92563 1.25712 0.96794 0.99015 0.96797 1.70014 1.13915 1.26763 1.44643 0.85398 0.78978 0.78493 0.78086 1.19378 1.20261 1.20374 1.74625 1.13217 1.04938 1.18294 1.85201 1.54007 1.42443 1.16071 0.87454 0.93154 0.91459 0.85781 0.92617 0.87565 0.91458 0.93242 0.88445 0.85173 0.95362 0.95610 0.91904 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.18 71.98 0.66 -1.06 16 2 C 0.00 0.03 3.39 -11.54 -0.04 -0.01 16 3 C -0.15 -1.47 9.18 71.98 0.66 -0.81 16 4 C 0.19 4.89 7.02 88.38 0.62 5.51 16 5 N -0.49 -16.81 11.55 -303.19 -3.50 -20.31 16 6 C 0.17 6.49 7.73 138.46 1.07 7.56 16 7 C 0.15 6.13 6.11 85.56 0.52 6.65 16 8 N -0.68 -31.32 6.29 -499.47 -3.14 -34.46 16 9 C 0.22 11.42 2.60 44.16 0.11 11.54 16 10 H -0.02 -1.13 7.80 -2.39 -0.02 -1.14 16 11 C -0.11 -5.79 9.19 71.98 0.66 -5.13 16 12 C -0.54 -30.61 8.59 25.60 0.22 -30.39 16 13 H 0.06 3.15 7.62 -2.91 -0.02 3.13 16 14 C 0.02 0.93 5.30 84.66 0.45 1.37 16 15 N -0.91 -52.85 11.32 21.45 0.24 -52.61 16 16 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 20 N -0.40 -14.36 12.16 -60.32 -0.73 -15.10 16 21 O 0.08 2.43 11.31 74.86 0.85 3.27 16 22 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 1.98 8.06 -2.39 -0.02 1.96 16 30 H 0.10 3.84 7.44 -2.39 -0.02 3.82 16 31 H 0.33 15.43 8.22 -89.69 -0.74 14.69 16 32 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.02 1.17 7.45 -2.39 -0.02 1.15 16 34 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 35 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -65.90 297.86 1.03 -64.87 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.35 Total: 13.05 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 4.94 Total: -4.76 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -7.13 Total: -122.48 kcal Atomic # 8 Polarization: 2.43 SS G_CDS: 0.85 Total: 3.27 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -65.90 1.03 -64.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.706 kcal (2) G-P(sol) polarization free energy of solvation -65.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds